RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 HSP90AB1P08238 724 aaKnown RBP21.67■■□□□ 1.06
PDLIM1-201ENST00000329399 PAPPAQ13219 1627 aa21.67■■□□□ 1.06
PDLIM1-201ENST00000329399 RNMTO43148 476 aaKnown RBP21.66■■□□□ 1.06
PDLIM1-201ENST00000329399 SLC4A9Q96Q91 983 aa21.66■■□□□ 1.06
PDLIM1-201ENST00000329399 STK32BQ9NY57 414 aa21.66■■□□□ 1.06
PDLIM1-201ENST00000329399 CABP4P57796 275 aa21.65■■□□□ 1.06
PDLIM1-201ENST00000329399 FCHSD2O94868 740 aa21.64■■□□□ 1.06
PDLIM1-201ENST00000329399 IL17REQ8NFR9 667 aa21.64■■□□□ 1.06
PDLIM1-201ENST00000329399 SMIM5Q71RC9 77 aa21.64■■□□□ 1.05
PDLIM1-201ENST00000329399 LOC102724428A0A0B4J2F2 783 aa21.63■■□□□ 1.05
PDLIM1-201ENST00000329399 SIK1P57059 783 aa21.63■■□□□ 1.05
PDLIM1-201ENST00000329399 ITPK1Q13572 414 aa21.63■■□□□ 1.05
PDLIM1-201ENST00000329399 AMIGO3Q86WK7 504 aa21.63■■□□□ 1.05
PDLIM1-201ENST00000329399 SMARCC1Q92922 1105 aaPredicted RBP21.63■■□□□ 1.05
PDLIM1-201ENST00000329399 PLEKHF1Q96S99 279 aa21.62■■□□□ 1.05
PDLIM1-201ENST00000329399 SLC52A2Q9HAB3 445 aa21.61■■□□□ 1.05
PDLIM1-201ENST00000329399 ZBTB7AO95365 584 aa21.6■■□□□ 1.05
PDLIM1-201ENST00000329399 SLC39A6Q13433 755 aa21.6■■□□□ 1.05
PDLIM1-201ENST00000329399 LINC00116Q8NCU8 138 aa21.6■■□□□ 1.05
PDLIM1-201ENST00000329399 ADAMTS8Q9UP79 889 aa21.6■■□□□ 1.05
PDLIM1-201ENST00000329399 SCN11AQ9UI33 1791 aa21.6■■□□□ 1.05
PDLIM1-201ENST00000329399 GNAT3A8MTJ3 354 aa21.59■■□□□ 1.05
PDLIM1-201ENST00000329399 GAS2L2Q8NHY3 880 aa21.59■■□□□ 1.05
PDLIM1-201ENST00000329399 PNPLA7Q6ZV29 1317 aa21.58■■□□□ 1.05
PDLIM1-201ENST00000329399 PTCD1O75127 700 aaKnown RBP21.58■■□□□ 1.05
PDLIM1-201ENST00000329399 RBM42Q9BTD8 480 aaKnown RBP21.58■■□□□ 1.05
PDLIM1-201ENST00000329399 TFCP2L1Q9NZI6 479 aa21.58■■□□□ 1.05
PDLIM1-201ENST00000329399 MAP3K5Q99683 1374 aa21.58■■□□□ 1.04
PDLIM1-201ENST00000329399 ATP6V1AP38606 617 aa21.58■■□□□ 1.04
PDLIM1-201ENST00000329399 NCBP3Q53F19 620 aaKnown RBP21.58■■□□□ 1.04
PDLIM1-201ENST00000329399 ATF5Q9Y2D1 282 aaPredicted RBP21.58■■□□□ 1.04
PDLIM1-201ENST00000329399 CASZ1Q86V15 1759 aa21.57■■□□□ 1.04
PDLIM1-201ENST00000329399 DCTN1Q14203 1278 aa21.57■■□□□ 1.04
PDLIM1-201ENST00000329399 ADAMTS7Q9UKP4 1686 aa21.56■■□□□ 1.04
PDLIM1-201ENST00000329399 MCM10Q7L590 875 aa21.56■■□□□ 1.04
PDLIM1-201ENST00000329399 COL23A1Q86Y22 540 aaPredicted RBP21.55■■□□□ 1.04
PDLIM1-201ENST00000329399 TAF1LQ8IZX4 1826 aa21.54■■□□□ 1.04
PDLIM1-201ENST00000329399 PNNQ9H307 717 aaKnown RBP21.54■■□□□ 1.04
PDLIM1-201ENST00000329399 GTF3C3Q9Y5Q9 886 aa21.54■■□□□ 1.04
PDLIM1-201ENST00000329399 TUBGCP6Q96RT7 1819 aa21.54■■□□□ 1.04
PDLIM1-201ENST00000329399 MRC1P22897 1456 aa21.53■■□□□ 1.04
PDLIM1-201ENST00000329399 PTGER2P43116 358 aa21.53■■□□□ 1.04
PDLIM1-201ENST00000329399 CEMIPQ8WUJ3 1361 aa21.53■■□□□ 1.04
PDLIM1-201ENST00000329399 VIRMAQ69YN4 1812 aaKnown RBP21.53■■□□□ 1.04
PDLIM1-201ENST00000329399 SPON1Q9HCB6 807 aa21.52■■□□□ 1.04
PDLIM1-201ENST00000329399 C5P01031 1676 aa21.52■■□□□ 1.04
PDLIM1-201ENST00000329399 KCNQ3O43525 872 aa21.52■■□□□ 1.03
PDLIM1-201ENST00000329399 CCDC146Q8IYE0 955 aa21.51■■□□□ 1.03
PDLIM1-201ENST00000329399 SGIP1Q9BQI5 828 aa21.51■■□□□ 1.03
PDLIM1-201ENST00000329399 LRP5O75197 1615 aa21.5■■□□□ 1.03
PDLIM1-201ENST00000329399 C4BP0C0L5 1744 aa21.5■■□□□ 1.03
PDLIM1-201ENST00000329399 THUMPD2Q9BTF0 503 aaKnown RBP21.49■■□□□ 1.03
PDLIM1-201ENST00000329399 UTRNP46939 3433 aa21.49■■□□□ 1.03
PDLIM1-201ENST00000329399 GOLGB1Q14789 3259 aaKnown RBP21.49■■□□□ 1.03
PDLIM1-201ENST00000329399 PHF14O94880 888 aa21.48■■□□□ 1.03
PDLIM1-201ENST00000329399 TEFQ10587 303 aa21.48■■□□□ 1.03
PDLIM1-201ENST00000329399 NFE2L2Q16236 605 aa21.48■■□□□ 1.03
PDLIM1-201ENST00000329399 DNAJC10Q8IXB1 793 aa21.48■■□□□ 1.03
PDLIM1-201ENST00000329399 RUNDC1Q96C34 613 aa21.48■■□□□ 1.03
PDLIM1-201ENST00000329399 AK7Q96M32 723 aa21.48■■□□□ 1.03
PDLIM1-201ENST00000329399 MTFR1LQ9H019 292 aa21.47■■□□□ 1.03
PDLIM1-201ENST00000329399 KCPQ6ZWJ8 1503 aa21.46■■□□□ 1.03
PDLIM1-201ENST00000329399 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.46■■□□□ 1.03
PDLIM1-201ENST00000329399 GNPATO15228 680 aa21.46■■□□□ 1.03
PDLIM1-201ENST00000329399 MSH5O43196 834 aa21.46■■□□□ 1.03
PDLIM1-201ENST00000329399 MIS18AQ9NYP9 233 aa21.46■■□□□ 1.03
PDLIM1-201ENST00000329399 MYH14Q7Z406 1995 aaKnown RBP21.46■■□□□ 1.03
PDLIM1-201ENST00000329399 NEFLP07196 543 aa21.45■■□□□ 1.03
PDLIM1-201ENST00000329399 ZNF790Q6PG37 636 aa21.45■■□□□ 1.03
PDLIM1-201ENST00000329399 RTF1Q92541 710 aaKnown RBP21.45■■□□□ 1.03
PDLIM1-201ENST00000329399 ZNF496Q96IT1 587 aaPredicted RBP21.45■■□□□ 1.03
PDLIM1-201ENST00000329399 RRP7AQ9Y3A4 280 aaKnown RBP21.45■■□□□ 1.03
PDLIM1-201ENST00000329399 MSL1Q68DK7 614 aa21.45■■□□□ 1.02
PDLIM1-201ENST00000329399 INTS5Q6P9B9 1019 aaKnown RBP21.45■■□□□ 1.02
PDLIM1-201ENST00000329399 SIPA1L3O60292 1781 aaPredicted RBP21.44■■□□□ 1.02
PDLIM1-201ENST00000329399 BTBD11A6QL63 1104 aa21.44■■□□□ 1.02
PDLIM1-201ENST00000329399 HTATSF1O43719 755 aaKnown RBP21.44■■□□□ 1.02
PDLIM1-201ENST00000329399 CRKLP46109 303 aaKnown RBP21.44■■□□□ 1.02
PDLIM1-201ENST00000329399 UBR3Q6ZT12 1888 aa21.44■■□□□ 1.02
PDLIM1-201ENST00000329399 DLG5Q8TDM6 1919 aa21.44■■□□□ 1.02
PDLIM1-201ENST00000329399 QSER1Q2KHR3 1735 aa21.44■■□□□ 1.02
PDLIM1-201ENST00000329399 TMPOP42166 694 aaKnown RBP21.43■■□□□ 1.02
PDLIM1-201ENST00000329399 RC3H1Q5TC82 1133 aaKnown RBP21.43■■□□□ 1.02
PDLIM1-201ENST00000329399 MAPK8IP3Q9UPT6 1336 aa21.43■■□□□ 1.02
PDLIM1-201ENST00000329399 CYP19A1P11511 503 aaPredicted RBP21.42■■□□□ 1.02
PDLIM1-201ENST00000329399 RIPK4P57078 832 aa21.42■■□□□ 1.02
PDLIM1-201ENST00000329399 SLC16A10Q8TF71 515 aa21.42■■□□□ 1.02
PDLIM1-201ENST00000329399 TJP1Q07157 1748 aa21.42■■□□□ 1.02
PDLIM1-201ENST00000329399 PRAMEF22A3QJZ6 481 aa21.41■■□□□ 1.02
PDLIM1-201ENST00000329399 NEUROD2Q15784 382 aa21.41■■□□□ 1.02
PDLIM1-201ENST00000329399 ZNF831Q5JPB2 1677 aa21.41■■□□□ 1.02
PDLIM1-201ENST00000329399 CNTNAP4Q9C0A0 1308 aa21.41■■□□□ 1.02
PDLIM1-201ENST00000329399 COL5A3P25940 1745 aaPredicted RBP21.4■■□□□ 1.02
PDLIM1-201ENST00000329399 NEFMP07197 916 aa21.4■■□□□ 1.02
PDLIM1-201ENST00000329399 SSFA2P28290 1259 aa21.4■■□□□ 1.02
PDLIM1-201ENST00000329399 CCDC27Q2M243 656 aa21.4■■□□□ 1.02
PDLIM1-201ENST00000329399 SENP3-EIF4A1A0A087X0R7 540 aa21.39■■□□□ 1.02
PDLIM1-201ENST00000329399 RPS6KA4O75676 772 aa21.39■■□□□ 1.02
PDLIM1-201ENST00000329399 TAF7Q15545 349 aaPredicted RBP21.39■■□□□ 1.02
PDLIM1-201ENST00000329399 ERICH6BQ5W0A0 696 aa21.39■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms