RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 STRCQ7RTU9 1775 aa19.9■□□□□ 0.78
USHBP1-202ENST00000324554 FOXD4L1Q9NU39 408 aa19.9■□□□□ 0.78
USHBP1-202ENST00000324554 MST1RQ04912 1400 aa19.9■□□□□ 0.78
USHBP1-202ENST00000324554 LRRC59Q96AG4 307 aaKnown RBP19.9■□□□□ 0.78
USHBP1-202ENST00000324554 ZC3H6P61129 1189 aaKnown RBP19.89■□□□□ 0.77
USHBP1-202ENST00000324554 G2E3Q7L622 706 aa19.89■□□□□ 0.77
USHBP1-202ENST00000324554 CABLES1Q8TDN4 633 aa19.89■□□□□ 0.77
USHBP1-202ENST00000324554 OTUD7AQ8TE49 926 aaPredicted RBP19.89■□□□□ 0.77
USHBP1-202ENST00000324554 CIZ1Q9ULV3 898 aaPredicted RBP19.89■□□□□ 0.77
USHBP1-202ENST00000324554 RAB3GAP1Q15042 981 aa19.88■□□□□ 0.77
USHBP1-202ENST00000324554 CADPS2Q86UW7 1296 aa19.88■□□□□ 0.77
USHBP1-202ENST00000324554 LTN1O94822 1766 aa19.88■□□□□ 0.77
USHBP1-202ENST00000324554 K7ELQ4 463 aaPredicted RBP19.87■□□□□ 0.77
USHBP1-202ENST00000324554 KCNH5Q8NCM2 988 aa19.87■□□□□ 0.77
USHBP1-202ENST00000324554 IP6K1Q92551 441 aa19.87■□□□□ 0.77
USHBP1-202ENST00000324554 LRRC37A3O60309 1634 aa19.87■□□□□ 0.77
USHBP1-202ENST00000324554 NBPF6Q5VWK0 638 aa19.87■□□□□ 0.77
USHBP1-202ENST00000324554 NBPF4Q96M43 638 aa19.87■□□□□ 0.77
USHBP1-202ENST00000324554 F6X3S4 739 aa19.86■□□□□ 0.77
USHBP1-202ENST00000324554 SMARCA5O60264 1052 aaPredicted RBP19.86■□□□□ 0.77
USHBP1-202ENST00000324554 AXIN2Q9Y2T1 843 aa19.86■□□□□ 0.77
USHBP1-202ENST00000324554 HTATSF1O43719 755 aaKnown RBP19.85■□□□□ 0.77
USHBP1-202ENST00000324554 EIF5BO60841 1220 aaKnown RBP19.85■□□□□ 0.77
USHBP1-202ENST00000324554 CCT4P50991 539 aaKnown RBP19.85■□□□□ 0.77
USHBP1-202ENST00000324554 SLC4A10Q6U841 1118 aa19.85■□□□□ 0.77
USHBP1-202ENST00000324554 NFAT5O94916 1531 aa19.85■□□□□ 0.77
USHBP1-202ENST00000324554 APBB1O00213 710 aa19.85■□□□□ 0.77
USHBP1-202ENST00000324554 HSP90AA1P07900 732 aaKnown RBP19.85■□□□□ 0.77
USHBP1-202ENST00000324554 SDSP20132 328 aa19.83■□□□□ 0.77
USHBP1-202ENST00000324554 MRE11P49959 708 aa19.83■□□□□ 0.77
USHBP1-202ENST00000324554 ARHGEF25Q86VW2 580 aa19.83■□□□□ 0.77
USHBP1-202ENST00000324554 GNAT3A8MTJ3 354 aa19.83■□□□□ 0.76
USHBP1-202ENST00000324554 HMMRO75330 724 aa19.83■□□□□ 0.76
USHBP1-202ENST00000324554 GBP4Q96PP9 640 aa19.83■□□□□ 0.76
USHBP1-202ENST00000324554 USP54Q70EL1 1684 aa19.83■□□□□ 0.76
USHBP1-202ENST00000324554 STK31Q9BXU1 1019 aa19.82■□□□□ 0.76
USHBP1-202ENST00000324554 GRPEL1Q9HAV7 217 aa19.82■□□□□ 0.76
USHBP1-202ENST00000324554 FAM208AQ9UK61 1670 aaKnown RBP19.81■□□□□ 0.76
USHBP1-202ENST00000324554 USP26Q9BXU7 913 aa19.81■□□□□ 0.76
USHBP1-202ENST00000324554 TRPM3Q9HCF6 1732 aaPredicted RBP19.81■□□□□ 0.76
USHBP1-202ENST00000324554 XIRP1Q702N8 1843 aaKnown RBP19.8■□□□□ 0.76
USHBP1-202ENST00000324554 SSFA2P28290 1259 aa19.8■□□□□ 0.76
USHBP1-202ENST00000324554 FLIIQ13045 1269 aa19.8■□□□□ 0.76
USHBP1-202ENST00000324554 BRINP3Q76B58 766 aa19.8■□□□□ 0.76
USHBP1-202ENST00000324554 RABEP1Q15276 862 aa19.8■□□□□ 0.76
USHBP1-202ENST00000324554 CCDC30Q5VVM6 783 aa19.8■□□□□ 0.76
USHBP1-202ENST00000324554 MAP3K5Q99683 1374 aa19.79■□□□□ 0.76
USHBP1-202ENST00000324554 GNAI2P04899 355 aa19.79■□□□□ 0.76
USHBP1-202ENST00000324554 GAS2L3Q86XJ1 694 aa19.79■□□□□ 0.76
USHBP1-202ENST00000324554 IL17REQ8NFR9 667 aa19.79■□□□□ 0.76
USHBP1-202ENST00000324554 ANKRD24Q8TF21 1146 aa19.78■□□□□ 0.76
USHBP1-202ENST00000324554 RGPD2P0DJD1 1756 aa19.78■□□□□ 0.76
USHBP1-202ENST00000324554 NPHP3Q7Z494 1330 aa19.78■□□□□ 0.76
USHBP1-202ENST00000324554 CHRNA2Q15822 529 aa19.78■□□□□ 0.76
USHBP1-202ENST00000324554 CASC1Q6TDU7 716 aa19.78■□□□□ 0.76
USHBP1-202ENST00000324554 SLAIN2Q9P270 581 aa19.78■□□□□ 0.76
USHBP1-202ENST00000324554 KIF1AQ12756 1690 aa19.77■□□□□ 0.76
USHBP1-202ENST00000324554 FKBP5Q13451 457 aaPredicted RBP19.77■□□□□ 0.76
USHBP1-202ENST00000324554 OSBPL3Q9H4L5 887 aa19.77■□□□□ 0.76
USHBP1-202ENST00000324554 DCCP43146 1447 aa19.77■□□□□ 0.76
USHBP1-202ENST00000324554 AK9Q5TCS8 1911 aa19.77■□□□□ 0.76
USHBP1-202ENST00000324554 NECTIN2Q92692 538 aa19.76■□□□□ 0.75
USHBP1-202ENST00000324554 SOS1Q07889 1333 aaPredicted RBP19.76■□□□□ 0.75
USHBP1-202ENST00000324554 PDE1AP54750 535 aa19.75■□□□□ 0.75
USHBP1-202ENST00000324554 ISY1Q9ULR0 285 aaKnown RBP19.75■□□□□ 0.75
USHBP1-202ENST00000324554 TAF7Q15545 349 aaPredicted RBP19.75■□□□□ 0.75
USHBP1-202ENST00000324554 SKOR2Q2VWA4 1001 aaPredicted RBP19.75■□□□□ 0.75
USHBP1-202ENST00000324554 BABAM1Q9NWV8 329 aa19.75■□□□□ 0.75
USHBP1-202ENST00000324554 EXOC6BQ9Y2D4 811 aa19.75■□□□□ 0.75
USHBP1-202ENST00000324554 MED1Q15648 1581 aaPredicted RBP19.74■□□□□ 0.75
USHBP1-202ENST00000324554 GNAI3P08754 354 aa19.74■□□□□ 0.75
USHBP1-202ENST00000324554 SLIT3O75094 1523 aa19.74■□□□□ 0.75
USHBP1-202ENST00000324554 CLEC17AQ6ZS10 378 aa19.74■□□□□ 0.75
USHBP1-202ENST00000324554 CACNA1FO60840 1977 aa19.74■□□□□ 0.75
USHBP1-202ENST00000324554 SALL3Q9BXA9 1300 aa19.73■□□□□ 0.75
USHBP1-202ENST00000324554 PNMA6EA0A0J9YXQ4 647 aa19.73■□□□□ 0.75
USHBP1-202ENST00000324554 N4BP2Q86UW6 1770 aaPredicted RBP19.72■□□□□ 0.75
USHBP1-202ENST00000324554 RGPD5Q99666 1765 aa19.72■□□□□ 0.75
USHBP1-202ENST00000324554 REC8O95072 547 aa19.72■□□□□ 0.75
USHBP1-202ENST00000324554 LGR6Q9HBX8 967 aa19.72■□□□□ 0.75
USHBP1-202ENST00000324554 ALS2Q96Q42 1657 aa19.72■□□□□ 0.75
USHBP1-202ENST00000324554 ERC2O15083 957 aa19.72■□□□□ 0.75
USHBP1-202ENST00000324554 BAG4O95429 457 aaKnown RBP19.72■□□□□ 0.75
USHBP1-202ENST00000324554 SPATA31A3Q5VYP0 1347 aa19.72■□□□□ 0.75
USHBP1-202ENST00000324554 PXDNLA1KZ92 1463 aa19.72■□□□□ 0.75
USHBP1-202ENST00000324554 PTMSP20962 102 aa19.71■□□□□ 0.75
USHBP1-202ENST00000324554 ATP8B2P98198 1209 aa19.71■□□□□ 0.75
USHBP1-202ENST00000324554 LRRCC1Q9C099 1032 aa19.71■□□□□ 0.75
USHBP1-202ENST00000324554 NLRP2Q9NX02 1062 aa19.71■□□□□ 0.75
USHBP1-202ENST00000324554 PXDNQ92626 1479 aa19.7■□□□□ 0.74
USHBP1-202ENST00000324554 TNS3Q68CZ2 1445 aa19.7■□□□□ 0.74
USHBP1-202ENST00000324554 IBTKQ9P2D0 1353 aaPredicted RBP19.7■□□□□ 0.74
USHBP1-202ENST00000324554 TSHZ3Q63HK5 1081 aa19.7■□□□□ 0.74
USHBP1-202ENST00000324554 MPRIPQ6WCQ1 1025 aa19.7■□□□□ 0.74
USHBP1-202ENST00000324554 CEMIPQ8WUJ3 1361 aa19.69■□□□□ 0.74
USHBP1-202ENST00000324554 PKP1Q13835 747 aa19.69■□□□□ 0.74
USHBP1-202ENST00000324554 LRRFIP2Q9Y608 721 aaKnown RBP19.69■□□□□ 0.74
USHBP1-202ENST00000324554 TUBGCP6Q96RT7 1819 aa19.69■□□□□ 0.74
USHBP1-202ENST00000324554 ERBB3P21860 1342 aa19.69■□□□□ 0.74
USHBP1-202ENST00000324554 CLCN1P35523 988 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms