RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 PLEKHO1Q53GL0 409 aaPredicted RBP9.2□□□□□ -0.94
CIITA-201ENST00000324288 SULT6B1Q6IMI4 303 aa9.2□□□□□ -0.94
CIITA-201ENST00000324288 SMG6Q86US8 1419 aaKnown RBP9.2□□□□□ -0.94
CIITA-201ENST00000324288 CEP135Q66GS9 1140 aa9.2□□□□□ -0.94
CIITA-201ENST00000324288 SPTY2D1Q68D10 685 aaPredicted RBP9.2□□□□□ -0.94
CIITA-201ENST00000324288 ZNF530Q6P9A1 599 aaPredicted RBP9.2□□□□□ -0.94
CIITA-201ENST00000324288 PIP4K2BP78356 416 aa9.19□□□□□ -0.94
CIITA-201ENST00000324288 BLOC1S2Q6QNY1 142 aa9.19□□□□□ -0.94
CIITA-201ENST00000324288 SMARCC1Q92922 1105 aaPredicted RBP9.19□□□□□ -0.94
CIITA-201ENST00000324288 CCDC57Q2TAC2 916 aa9.19□□□□□ -0.94
CIITA-201ENST00000324288 CCDC83Q8IWF9 413 aa9.19□□□□□ -0.94
CIITA-201ENST00000324288 CIZ1Q9ULV3 898 aaPredicted RBP9.19□□□□□ -0.94
CIITA-201ENST00000324288 NOL7Q9UMY1 257 aaKnown RBP9.19□□□□□ -0.94
CIITA-201ENST00000324288 TOP1P11387 765 aaKnown RBP9.19□□□□□ -0.94
CIITA-201ENST00000324288 MCM6Q14566 821 aa9.19□□□□□ -0.94
CIITA-201ENST00000324288 CLGNO14967 610 aa9.19□□□□□ -0.94
CIITA-201ENST00000324288 TOM1L2Q6ZVM7 507 aa9.19□□□□□ -0.94
CIITA-201ENST00000324288 HLTFQ14527 1009 aaKnown RBP eCLIP9.19□□□□□ -0.94
CIITA-201ENST00000324288 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.19□□□□□ -0.94
CIITA-201ENST00000324288 IDH1O75874 414 aaKnown RBP9.19□□□□□ -0.94
CIITA-201ENST00000324288 GPRASP1Q5JY77 1395 aa9.19□□□□□ -0.94
CIITA-201ENST00000324288 CCDC160A6NGH7 325 aa9.19□□□□□ -0.94
CIITA-201ENST00000324288 GAS2L2Q8NHY3 880 aa9.19□□□□□ -0.94
CIITA-201ENST00000324288 TNPO1Q92973 898 aaKnown RBP9.19□□□□□ -0.94
CIITA-201ENST00000324288 PAIP2Q9BPZ3 127 aaKnown RBP9.19□□□□□ -0.94
CIITA-201ENST00000324288 SMTNL1A8MU46 457 aa9.19□□□□□ -0.94
CIITA-201ENST00000324288 FAM69CQ0P6D2 419 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 SLC4A8Q2Y0W8 1093 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 SPA17Q15506 151 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 CLIP2Q9UDT6 1046 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 CFAP65Q6ZU64 1925 aaKnown RBP9.18□□□□□ -0.94
CIITA-201ENST00000324288 PPFIA3O75145 1194 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 LRP2BPQ9P2M1 347 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 PPP2R1AP30153 589 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 FSIP1Q8NA03 581 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 DNAAF4Q8WXU2 420 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 ISM2Q6H9L7 571 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 ADCY5O95622 1261 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 GBP3Q9H0R5 595 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 KIF2AO00139 706 aaPredicted RBP9.18□□□□□ -0.94
CIITA-201ENST00000324288 NBPF1Q3BBV0 1214 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 CCDC82Q8N4S0 544 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 HYPKQ9NX55 129 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 PPARDQ03181 441 aa9.18□□□□□ -0.94
CIITA-201ENST00000324288 DRC1Q96MC2 740 aa9.17□□□□□ -0.94
CIITA-201ENST00000324288 BMP2KQ9NSY1 1161 aaPredicted RBP9.17□□□□□ -0.94
CIITA-201ENST00000324288 WASHC2AQ641Q2 1341 aa9.17□□□□□ -0.94
CIITA-201ENST00000324288 SNW1Q13573 536 aaKnown RBP9.17□□□□□ -0.94
CIITA-201ENST00000324288 RRS1Q15050 365 aaKnown RBP9.17□□□□□ -0.94
CIITA-201ENST00000324288 CHD1LQ86WJ1 897 aa9.17□□□□□ -0.94
CIITA-201ENST00000324288 PRAM1Q96QH2 718 aa9.17□□□□□ -0.94
CIITA-201ENST00000324288 SRGAP3O43295 1099 aa9.17□□□□□ -0.94
CIITA-201ENST00000324288 SMC1AQ14683 1233 aaKnown RBP9.17□□□□□ -0.94
CIITA-201ENST00000324288 TTC31Q49AM3 519 aaPredicted RBP9.17□□□□□ -0.94
CIITA-201ENST00000324288 TXNDC2Q86VQ3 553 aa9.17□□□□□ -0.94
CIITA-201ENST00000324288 TXLNBQ8N3L3 684 aa9.17□□□□□ -0.94
CIITA-201ENST00000324288 ZNF219Q9P2Y4 722 aaPredicted RBP9.17□□□□□ -0.94
CIITA-201ENST00000324288 TFIP11Q9UBB9 837 aaKnown RBP9.17□□□□□ -0.94
CIITA-201ENST00000324288 PTPRGP23470 1445 aa9.17□□□□□ -0.94
CIITA-201ENST00000324288 ARHGAP5Q13017 1502 aa9.17□□□□□ -0.94
CIITA-201ENST00000324288 TATP17735 454 aaPredicted RBP9.17□□□□□ -0.94
CIITA-201ENST00000324288 KRT222Q8N1A0 295 aa9.17□□□□□ -0.94
CIITA-201ENST00000324288 ANKRD1Q15327 319 aa9.17□□□□□ -0.94
CIITA-201ENST00000324288 IMMTQ16891 758 aaKnown RBP9.16□□□□□ -0.94
CIITA-201ENST00000324288 APBB1IPQ7Z5R6 666 aaPredicted RBP9.16□□□□□ -0.94
CIITA-201ENST00000324288 CEP57Q86XR8 500 aa9.16□□□□□ -0.94
CIITA-201ENST00000324288 ABCF2Q9UG63 623 aa9.16□□□□□ -0.94
CIITA-201ENST00000324288 WDR70Q9NW82 654 aa9.16□□□□□ -0.94
CIITA-201ENST00000324288 MINDY4BA8MYZ0 360 aa9.16□□□□□ -0.94
CIITA-201ENST00000324288 HOOK3Q86VS8 718 aa9.16□□□□□ -0.94
CIITA-201ENST00000324288 RAB11FIP4Q86YS3 637 aa9.16□□□□□ -0.94
CIITA-201ENST00000324288 WDR78Q5VTH9 848 aa9.16□□□□□ -0.94
CIITA-201ENST00000324288 NUP88Q99567 741 aaPredicted RBP9.16□□□□□ -0.94
CIITA-201ENST00000324288 PANK2Q9BZ23 570 aa9.16□□□□□ -0.94
CIITA-201ENST00000324288 SEC63Q9UGP8 760 aaKnown RBP9.16□□□□□ -0.94
CIITA-201ENST00000324288 SPATA24Q86W54 205 aa9.16□□□□□ -0.94
CIITA-201ENST00000324288 DYNC1I1O14576 645 aa9.16□□□□□ -0.94
CIITA-201ENST00000324288 MICALL1Q8N3F8 863 aa9.16□□□□□ -0.94
CIITA-201ENST00000324288 RUSC2Q8N2Y8 1516 aa9.16□□□□□ -0.94
CIITA-201ENST00000324288 CDKL5O76039 1030 aa9.15□□□□□ -0.94
CIITA-201ENST00000324288 FAM160A1Q05DH4 1040 aa9.15□□□□□ -0.94
CIITA-201ENST00000324288 DESP17661 470 aa9.15□□□□□ -0.94
CIITA-201ENST00000324288 ATRIPQ8WXE1 791 aa9.15□□□□□ -0.94
CIITA-201ENST00000324288 PRPF4BQ13523 1007 aaKnown RBP9.15□□□□□ -0.94
CIITA-201ENST00000324288 NUMA1Q14980 2115 aa9.15□□□□□ -0.94
CIITA-201ENST00000324288 BRD4O60885 1362 aaPredicted RBP9.15□□□□□ -0.94
CIITA-201ENST00000324288 CCDC6Q16204 474 aa9.15□□□□□ -0.94
CIITA-201ENST00000324288 COMMD10Q9Y6G5 202 aa9.15□□□□□ -0.94
CIITA-201ENST00000324288 RAD54L2Q9Y4B4 1467 aa9.15□□□□□ -0.94
CIITA-201ENST00000324288 GNG11P61952 73 aa9.15□□□□□ -0.94
CIITA-201ENST00000324288 PAXIP1Q6ZW49 1069 aaPredicted RBP9.15□□□□□ -0.94
CIITA-201ENST00000324288 BTBD11A6QL63 1104 aa9.15□□□□□ -0.94
CIITA-201ENST00000324288 CCT4P50991 539 aaKnown RBP9.15□□□□□ -0.94
CIITA-201ENST00000324288 NOP2P46087 812 aaKnown RBP9.15□□□□□ -0.95
CIITA-201ENST00000324288 DNAJC21Q5F1R6 531 aaKnown RBP9.15□□□□□ -0.95
CIITA-201ENST00000324288 AIDAQ96BJ3 306 aa9.15□□□□□ -0.95
CIITA-201ENST00000324288 TBC1D2Q9BYX2 928 aa9.15□□□□□ -0.95
CIITA-201ENST00000324288 CCDC144CPQ8IYA2 1237 aa9.15□□□□□ -0.95
CIITA-201ENST00000324288 SF3B2Q13435 895 aaKnown RBP9.14□□□□□ -0.95
CIITA-201ENST00000324288 MTIF2P46199 727 aaKnown RBP9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms