RNA–Protein interactions for RNA: ENST00000321356.8

CLK1-201, Transcript of CDC like kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK1, Length 1,888 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-201ENST00000321356 DIP2AQ14689 1571 aa10.68□□□□□ -0.7
CLK1-201ENST00000321356 NWD1Q149M9 1564 aa10.68□□□□□ -0.7
CLK1-201ENST00000321356 F6X3S4 739 aa10.68□□□□□ -0.7
CLK1-201ENST00000321356 APBB1O00213 710 aa10.68□□□□□ -0.7
CLK1-201ENST00000321356 GNAI2P04899 355 aa10.68□□□□□ -0.7
CLK1-201ENST00000321356 PKP1Q13835 747 aa10.68□□□□□ -0.7
CLK1-201ENST00000321356 RTF1Q92541 710 aaKnown RBP10.68□□□□□ -0.7
CLK1-201ENST00000321356 RGPD8O14715 1765 aaPredicted RBP10.68□□□□□ -0.7
CLK1-201ENST00000321356 PXDNLA1KZ92 1463 aa10.68□□□□□ -0.7
CLK1-201ENST00000321356 SOS1Q07889 1333 aaPredicted RBP10.68□□□□□ -0.7
CLK1-201ENST00000321356 SLIT1O75093 1534 aa10.68□□□□□ -0.7
CLK1-201ENST00000321356 CCDC173Q0VFZ6 552 aa10.68□□□□□ -0.7
CLK1-201ENST00000321356 MCTP1Q6DN14 999 aa10.68□□□□□ -0.7
CLK1-201ENST00000321356 IL17RAQ96F46 866 aa10.68□□□□□ -0.7
CLK1-201ENST00000321356 ZDHHC9Q9Y397 364 aa10.68□□□□□ -0.7
CLK1-201ENST00000321356 ARHGAP23Q9P227 1491 aa10.67□□□□□ -0.7
CLK1-201ENST00000321356 NUTM2FA1L443 756 aa10.67□□□□□ -0.7
CLK1-201ENST00000321356 SLC4A10Q6U841 1118 aa10.67□□□□□ -0.7
CLK1-201ENST00000321356 ZGPATQ8N5A5 531 aaKnown RBP10.67□□□□□ -0.7
CLK1-201ENST00000321356 EYA1Q99502 592 aa10.67□□□□□ -0.7
CLK1-201ENST00000321356 GNAI3P08754 354 aa10.66□□□□□ -0.7
CLK1-201ENST00000321356 NASPP49321 788 aaPredicted RBP10.66□□□□□ -0.7
CLK1-201ENST00000321356 FLIIQ13045 1269 aa10.66□□□□□ -0.7
CLK1-201ENST00000321356 TRIM44Q96DX7 344 aaPredicted RBP10.66□□□□□ -0.7
CLK1-201ENST00000321356 ESYT1Q9BSJ8 1104 aa10.66□□□□□ -0.7
CLK1-201ENST00000321356 STK31Q9BXU1 1019 aa10.66□□□□□ -0.7
CLK1-201ENST00000321356 STAP2Q9UGK3 403 aa10.66□□□□□ -0.7
CLK1-201ENST00000321356 ZSCAN23Q3MJ62 389 aa10.66□□□□□ -0.7
CLK1-201ENST00000321356 LRRCC1Q9C099 1032 aa10.66□□□□□ -0.7
CLK1-201ENST00000321356 MX1P20591 662 aa10.65□□□□□ -0.7
CLK1-201ENST00000321356 MCM2P49736 904 aa10.65□□□□□ -0.7
CLK1-201ENST00000321356 ANAPC15P60006 121 aa10.65□□□□□ -0.7
CLK1-201ENST00000321356 ATP8B2P98198 1209 aa10.65□□□□□ -0.7
CLK1-201ENST00000321356 CCDC30Q5VVM6 783 aa10.65□□□□□ -0.7
CLK1-201ENST00000321356 BABAM1Q9NWV8 329 aa10.65□□□□□ -0.7
CLK1-201ENST00000321356 EXOC6BQ9Y2D4 811 aa10.65□□□□□ -0.7
CLK1-201ENST00000321356 PNMA6EA0A0J9YXQ4 647 aa10.64□□□□□ -0.71
CLK1-201ENST00000321356 SOX12O15370 315 aa10.64□□□□□ -0.71
CLK1-201ENST00000321356 PRKCSHP14314 528 aaPredicted RBP10.64□□□□□ -0.71
CLK1-201ENST00000321356 CUL4AQ13619 759 aa10.64□□□□□ -0.71
CLK1-201ENST00000321356 TMX3Q96JJ7 454 aa10.64□□□□□ -0.71
CLK1-201ENST00000321356 TBX22Q9Y458 520 aa10.64□□□□□ -0.71
CLK1-201ENST00000321356 ANKARQ7Z5J8 1434 aa10.64□□□□□ -0.71
CLK1-201ENST00000321356 AOX1Q06278 1338 aa10.64□□□□□ -0.71
CLK1-201ENST00000321356 GNAT3A8MTJ3 354 aa10.64□□□□□ -0.71
CLK1-201ENST00000321356 CHMLP26374 656 aa10.64□□□□□ -0.71
CLK1-201ENST00000321356 CAVIN1Q6NZI2 390 aaKnown RBP10.64□□□□□ -0.71
CLK1-201ENST00000321356 GPT2Q8TD30 523 aa10.64□□□□□ -0.71
CLK1-201ENST00000321356 SLC26A8Q96RN1 970 aa10.64□□□□□ -0.71
CLK1-201ENST00000321356 SRCIN1Q9C0H9 1055 aa10.64□□□□□ -0.71
CLK1-201ENST00000321356 AMOTL2Q9Y2J4 779 aa10.64□□□□□ -0.71
CLK1-201ENST00000321356 MAP3K5Q99683 1374 aa10.63□□□□□ -0.71
CLK1-201ENST00000321356 EPB41L2O43491 1005 aaKnown RBP10.63□□□□□ -0.71
CLK1-201ENST00000321356 AMPHP49418 695 aa10.63□□□□□ -0.71
CLK1-201ENST00000321356 NEK4P51957 841 aa10.63□□□□□ -0.71
CLK1-201ENST00000321356 FKBP5Q13451 457 aaPredicted RBP10.63□□□□□ -0.71
CLK1-201ENST00000321356 INTS4Q96HW7 963 aaKnown RBP10.63□□□□□ -0.71
CLK1-201ENST00000321356 NAP1L5Q96NT1 182 aaPredicted RBP10.63□□□□□ -0.71
CLK1-201ENST00000321356 MED1Q15648 1581 aaPredicted RBP10.62□□□□□ -0.71
CLK1-201ENST00000321356 PRPF40AO75400 957 aaKnown RBP10.62□□□□□ -0.71
CLK1-201ENST00000321356 HOXC9P31274 260 aa10.62□□□□□ -0.71
CLK1-201ENST00000321356 TSHZ3Q63HK5 1081 aa10.62□□□□□ -0.71
CLK1-201ENST00000321356 NGDNQ8NEJ9 315 aaKnown RBP10.62□□□□□ -0.71
CLK1-201ENST00000321356 IL17REQ8NFR9 667 aa10.62□□□□□ -0.71
CLK1-201ENST00000321356 PDLIM2Q96JY6 352 aa10.62□□□□□ -0.71
CLK1-201ENST00000321356 PALD1Q9ULE6 856 aa10.62□□□□□ -0.71
CLK1-201ENST00000321356 BRD1O95696 1058 aa10.61□□□□□ -0.71
CLK1-201ENST00000321356 MCCP23508 829 aa10.61□□□□□ -0.71
CLK1-201ENST00000321356 HS1BP3Q53T59 392 aa10.61□□□□□ -0.71
CLK1-201ENST00000321356 ZSCAN30Q86W11 494 aa10.61□□□□□ -0.71
CLK1-201ENST00000321356 ANP32BQ92688 251 aaKnown RBP10.61□□□□□ -0.71
CLK1-201ENST00000321356 USP44Q9H0E7 712 aa10.61□□□□□ -0.71
CLK1-201ENST00000321356 EID1Q9Y6B2 187 aa10.61□□□□□ -0.71
CLK1-201ENST00000321356 CRYBG1Q9Y4K1 1723 aa10.61□□□□□ -0.71
CLK1-201ENST00000321356 TAF7Q15545 349 aaPredicted RBP10.61□□□□□ -0.71
CLK1-201ENST00000321356 SSH3Q8TE77 659 aa10.61□□□□□ -0.71
CLK1-201ENST00000321356 RBSNQ9H1K0 784 aa10.61□□□□□ -0.71
CLK1-201ENST00000321356 LRRFIP2Q9Y608 721 aaKnown RBP10.61□□□□□ -0.71
CLK1-201ENST00000321356 KDM3BQ7LBC6 1761 aa10.6□□□□□ -0.71
CLK1-201ENST00000321356 MBD3O95983 291 aa10.59□□□□□ -0.71
CLK1-201ENST00000321356 NCLP19338 710 aaKnown RBP10.59□□□□□ -0.71
CLK1-201ENST00000321356 PRIM1P49642 420 aaKnown RBP10.59□□□□□ -0.71
CLK1-201ENST00000321356 NLRP6P59044 892 aa10.59□□□□□ -0.71
CLK1-201ENST00000321356 POLA2Q14181 598 aa10.59□□□□□ -0.71
CLK1-201ENST00000321356 LRSAM1Q6UWE0 723 aa10.59□□□□□ -0.71
CLK1-201ENST00000321356 UNC5CLQ8IV45 518 aa10.59□□□□□ -0.71
CLK1-201ENST00000321356 ANO2Q9NQ90 1003 aa10.59□□□□□ -0.71
CLK1-201ENST00000321356 TMEM63CQ9P1W3 806 aa10.59□□□□□ -0.71
CLK1-201ENST00000321356 CEMIPQ8WUJ3 1361 aa10.59□□□□□ -0.71
CLK1-201ENST00000321356 UBTFL1P0CB47 393 aaPredicted RBP10.59□□□□□ -0.71
CLK1-201ENST00000321356 UBE2Q2Q8WVN8 375 aa10.59□□□□□ -0.71
CLK1-201ENST00000321356 RBM27Q9P2N5 1060 aaKnown RBP10.59□□□□□ -0.71
CLK1-201ENST00000321356 LTN1O94822 1766 aa10.58□□□□□ -0.72
CLK1-201ENST00000321356 RAB11FIP3O75154 756 aa10.58□□□□□ -0.72
CLK1-201ENST00000321356 PLEKHG5O94827 1062 aa10.58□□□□□ -0.72
CLK1-201ENST00000321356 RILPL2Q969X0 211 aa10.58□□□□□ -0.72
CLK1-201ENST00000321356 CHAMP1Q96JM3 812 aa10.58□□□□□ -0.72
CLK1-201ENST00000321356 NSFL1CQ9UNZ2 370 aaKnown RBP10.58□□□□□ -0.72
CLK1-201ENST00000321356 TRIM6-TRIM34B2RNG4 842 aa10.57□□□□□ -0.72
CLK1-201ENST00000321356 HSPA4P34932 840 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms