RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 TFCP2L1Q9NZI6 479 aa16.04■□□□□ 0.16
RFFL-201ENST00000315249 PPP1R42Q7Z4L9 355 aa16.04■□□□□ 0.16
RFFL-201ENST00000315249 DBF4Q9UBU7 674 aaPredicted RBP16.04■□□□□ 0.16
RFFL-201ENST00000315249 SETDB2Q96T68 719 aa16.03■□□□□ 0.16
RFFL-201ENST00000315249 CLEC11AQ9Y240 323 aa16.03■□□□□ 0.16
RFFL-201ENST00000315249 MAP3K2Q9Y2U5 619 aa16.03■□□□□ 0.16
RFFL-201ENST00000315249 LRRC59Q96AG4 307 aaKnown RBP16.03■□□□□ 0.16
RFFL-201ENST00000315249 CHMP5Q9NZZ3 219 aa16.03■□□□□ 0.16
RFFL-201ENST00000315249 ZMYM3Q14202 1370 aa16.03■□□□□ 0.16
RFFL-201ENST00000315249 SLC4A8Q2Y0W8 1093 aa16.02■□□□□ 0.16
RFFL-201ENST00000315249 ZNF287Q9HBT7 754 aa16.02■□□□□ 0.16
RFFL-201ENST00000315249 DUOX2Q9NRD8 1548 aa16.02■□□□□ 0.16
RFFL-201ENST00000315249 MATR3P43243 847 aaKnown RBP eCLIP16.02■□□□□ 0.163e-6■■■□□ 15.2
RFFL-201ENST00000315249 CDC5LQ99459 802 aaKnown RBP16.02■□□□□ 0.16
RFFL-201ENST00000315249 CTNNA3Q9UI47 895 aa16.02■□□□□ 0.16
RFFL-201ENST00000315249 HSP90AB2PQ58FF8 381 aa16.02■□□□□ 0.15
RFFL-201ENST00000315249 CHD1LQ86WJ1 897 aa16.02■□□□□ 0.15
RFFL-201ENST00000315249 SCAF11Q99590 1463 aaKnown RBP16.01■□□□□ 0.15
RFFL-201ENST00000315249 NBPF14Q5TI25 921 aa16.01■□□□□ 0.15
RFFL-201ENST00000315249 DNAAF4Q8WXU2 420 aa16.01■□□□□ 0.15
RFFL-201ENST00000315249 FAM83GA6ND36 823 aa16.01■□□□□ 0.15
RFFL-201ENST00000315249 CCDC184Q52MB2 194 aa16.01■□□□□ 0.15
RFFL-201ENST00000315249 CCDC70Q6NSX1 233 aa16.01■□□□□ 0.15
RFFL-201ENST00000315249 SSBP05455 408 aaKnown RBP eCLIP16.01■□□□□ 0.15
RFFL-201ENST00000315249 CWC25Q9NXE8 425 aaPredicted RBP16.01■□□□□ 0.15
RFFL-201ENST00000315249 PPIP5K1Q6PFW1 1433 aa16.01■□□□□ 0.15
RFFL-201ENST00000315249 KIF1BPQ96EK5 621 aa16■□□□□ 0.15
RFFL-201ENST00000315249 ANXA1P04083 346 aa16■□□□□ 0.15
RFFL-201ENST00000315249 SLC39A6Q13433 755 aa16■□□□□ 0.15
RFFL-201ENST00000315249 STK38Q15208 465 aa16■□□□□ 0.15
RFFL-201ENST00000315249 PDILTQ8N807 584 aa16■□□□□ 0.15
RFFL-201ENST00000315249 CCDC8Q9H0W5 538 aaPredicted RBP16■□□□□ 0.15
RFFL-201ENST00000315249 IMMTQ16891 758 aaKnown RBP16■□□□□ 0.15
RFFL-201ENST00000315249 LDHAL6AQ6ZMR3 332 aa16■□□□□ 0.15
RFFL-201ENST00000315249 HOMER1Q86YM7 354 aa16■□□□□ 0.15
RFFL-201ENST00000315249 C16orf71Q8IYS4 520 aaPredicted RBP16■□□□□ 0.15
RFFL-201ENST00000315249 MAP3K12Q12852 859 aa16■□□□□ 0.15
RFFL-201ENST00000315249 BTG4Q9NY30 223 aa16■□□□□ 0.15
RFFL-201ENST00000315249 PBRM1Q86U86 1689 aa16■□□□□ 0.15
RFFL-201ENST00000315249 SNRPA1P09661 255 aaKnown RBP16■□□□□ 0.15
RFFL-201ENST00000315249 PDCP20941 246 aa16■□□□□ 0.15
RFFL-201ENST00000315249 SMARCA5O60264 1052 aaPredicted RBP16■□□□□ 0.15
RFFL-201ENST00000315249 POLD1P28340 1107 aa16■□□□□ 0.15
RFFL-201ENST00000315249 BRPF1P55201 1214 aaPredicted RBP16■□□□□ 0.15
RFFL-201ENST00000315249 BLOC1S2Q6QNY1 142 aa16■□□□□ 0.15
RFFL-201ENST00000315249 ZNF444Q8N0Y2 327 aaPredicted RBP16■□□□□ 0.15
RFFL-201ENST00000315249 NAPBQ9H115 298 aa15.99■□□□□ 0.15
RFFL-201ENST00000315249 TRAPPC8Q9Y2L5 1435 aa15.99■□□□□ 0.15
RFFL-201ENST00000315249 CCDC96Q2M329 555 aa15.99■□□□□ 0.15
RFFL-201ENST00000315249 LRRFIP2Q9Y608 721 aaKnown RBP15.99■□□□□ 0.15
RFFL-201ENST00000315249 PIP4K2AP48426 406 aaPredicted RBP15.99■□□□□ 0.15
RFFL-201ENST00000315249 ANKRD1Q15327 319 aa15.99■□□□□ 0.15
RFFL-201ENST00000315249 SLF2Q8IX21 1173 aa15.99■□□□□ 0.15
RFFL-201ENST00000315249 UHRF1BP1Q6BDS2 1440 aa15.98■□□□□ 0.15
RFFL-201ENST00000315249 KINO60870 393 aaKnown RBP15.98■□□□□ 0.15
RFFL-201ENST00000315249 UBE3BQ7Z3V4 1068 aa15.98■□□□□ 0.15
RFFL-201ENST00000315249 FEZ1Q99689 392 aa15.98■□□□□ 0.15
RFFL-201ENST00000315249 JAKMIP1Q96N16 626 aaKnown RBP15.98■□□□□ 0.15
RFFL-201ENST00000315249 RANBP6O60518 1105 aaKnown RBP15.98■□□□□ 0.15
RFFL-201ENST00000315249 KCNA6P17658 529 aa15.98■□□□□ 0.15
RFFL-201ENST00000315249 IL2RBP14784 551 aa15.97■□□□□ 0.15
RFFL-201ENST00000315249 ZNF396Q96N95 335 aaPredicted RBP15.97■□□□□ 0.15
RFFL-201ENST00000315249 SEC63Q9UGP8 760 aaKnown RBP15.97■□□□□ 0.15
RFFL-201ENST00000315249 MAGEC2Q9UBF1 373 aaPredicted RBP15.97■□□□□ 0.15
RFFL-201ENST00000315249 NAT10Q9H0A0 1025 aaKnown RBP15.97■□□□□ 0.15
RFFL-201ENST00000315249 MYO1BO43795 1136 aa15.97■□□□□ 0.15
RFFL-201ENST00000315249 SSH1Q8WYL5 1049 aa15.97■□□□□ 0.15
RFFL-201ENST00000315249 TTC21AQ8NDW8 1320 aa15.96■□□□□ 0.15
RFFL-201ENST00000315249 SMARCC1Q92922 1105 aaPredicted RBP15.96■□□□□ 0.15
RFFL-201ENST00000315249 ADAMTS12P58397 1594 aa15.96■□□□□ 0.15
RFFL-201ENST00000315249 F8W031 263 aaPredicted RBP15.96■□□□□ 0.15
RFFL-201ENST00000315249 FIBPO43427 364 aa15.96■□□□□ 0.15
RFFL-201ENST00000315249 SYCP1Q15431 976 aa15.96■□□□□ 0.15
RFFL-201ENST00000315249 RTCBQ9Y3I0 505 aaKnown RBP15.96■□□□□ 0.15
RFFL-201ENST00000315249 KIAA0556O60303 1618 aa15.96■□□□□ 0.15
RFFL-201ENST00000315249 RPAP2Q8IXW5 612 aaPredicted RBP15.96■□□□□ 0.14
RFFL-201ENST00000315249 SLFN5Q08AF3 891 aa15.95■□□□□ 0.14
RFFL-201ENST00000315249 TTLL5Q6EMB2 1281 aa15.95■□□□□ 0.14
RFFL-201ENST00000315249 MCM2P49736 904 aa15.95■□□□□ 0.14
RFFL-201ENST00000315249 ZRANB1Q9UGI0 708 aa15.95■□□□□ 0.14
RFFL-201ENST00000315249 NIP7Q9Y221 180 aaKnown RBP eCLIP15.95■□□□□ 0.14
RFFL-201ENST00000315249 FLIIQ13045 1269 aa15.95■□□□□ 0.14
RFFL-201ENST00000315249 NOL7Q9UMY1 257 aaKnown RBP15.95■□□□□ 0.14
RFFL-201ENST00000315249 PARP3Q9Y6F1 533 aa15.95■□□□□ 0.14
RFFL-201ENST00000315249 PI4KAP2A4QPH2 592 aa15.94■□□□□ 0.14
RFFL-201ENST00000315249 PI4KAP1Q8N8J0 262 aa15.94■□□□□ 0.14
RFFL-201ENST00000315249 SCLT1Q96NL6 688 aa15.94■□□□□ 0.14
RFFL-201ENST00000315249 ABCC10Q5T3U5 1492 aa15.94■□□□□ 0.14
RFFL-201ENST00000315249 NUP153P49790 1475 aaKnown RBP15.94■□□□□ 0.14
RFFL-201ENST00000315249 RAB11FIP3O75154 756 aa15.94■□□□□ 0.14
RFFL-201ENST00000315249 CCDC152Q4G0S7 254 aa15.94■□□□□ 0.14
RFFL-201ENST00000315249 SIRT1Q96EB6 747 aa15.94■□□□□ 0.14
RFFL-201ENST00000315249 CDKL5O76039 1030 aa15.94■□□□□ 0.14
RFFL-201ENST00000315249 C11orf95C9JLR9 678 aaPredicted RBP15.94■□□□□ 0.14
RFFL-201ENST00000315249 CCDC82Q8N4S0 544 aa15.94■□□□□ 0.14
RFFL-201ENST00000315249 PDCL3Q9H2J4 239 aa15.94■□□□□ 0.14
RFFL-201ENST00000315249 ME1P48163 572 aa15.93■□□□□ 0.14
RFFL-201ENST00000315249 ANKRD13DQ6ZTN6 518 aa15.93■□□□□ 0.14
RFFL-201ENST00000315249 PDRG1Q9NUG6 133 aa15.93■□□□□ 0.14
RFFL-201ENST00000315249 ECM2O94769 699 aaPredicted RBP15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms