RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 MBD3O95983 291 aa16.36■□□□□ 0.21
SKA3-202ENST00000314759 RNF214Q8ND24 703 aa16.36■□□□□ 0.21
SKA3-202ENST00000314759 NRXN3Q9Y4C0 1643 aa16.36■□□□□ 0.21
SKA3-202ENST00000314759 FOXO3O43524 673 aa16.35■□□□□ 0.21
SKA3-202ENST00000314759 GNAI2P04899 355 aa16.35■□□□□ 0.21
SKA3-202ENST00000314759 MAP7D2Q96T17 732 aa16.35■□□□□ 0.21
SKA3-202ENST00000314759 TTC21BQ7Z4L5 1316 aa16.35■□□□□ 0.21
SKA3-202ENST00000314759 AKAP12Q02952 1782 aa16.34■□□□□ 0.21
SKA3-202ENST00000314759 NOL8Q76FK4 1167 aaKnown RBP16.34■□□□□ 0.21
SKA3-202ENST00000314759 LRRCC1Q9C099 1032 aa16.34■□□□□ 0.21
SKA3-202ENST00000314759 MX1P20591 662 aa16.34■□□□□ 0.21
SKA3-202ENST00000314759 CHMLP26374 656 aa16.34■□□□□ 0.21
SKA3-202ENST00000314759 TSPYL4Q9UJ04 414 aa16.34■□□□□ 0.21
SKA3-202ENST00000314759 JARID2Q92833 1246 aaPredicted RBP16.33■□□□□ 0.21
SKA3-202ENST00000314759 INTS4Q96HW7 963 aaKnown RBP16.33■□□□□ 0.21
SKA3-202ENST00000314759 ANO2Q9NQ90 1003 aa16.33■□□□□ 0.21
SKA3-202ENST00000314759 PNMA6EA0A0J9YXQ4 647 aa16.33■□□□□ 0.2
SKA3-202ENST00000314759 MCM5P33992 734 aa16.33■□□□□ 0.2
SKA3-202ENST00000314759 ANAPC15P60006 121 aa16.33■□□□□ 0.2
SKA3-202ENST00000314759 SIRT1Q96EB6 747 aa16.33■□□□□ 0.2
SKA3-202ENST00000314759 MCCP23508 829 aa16.32■□□□□ 0.2
SKA3-202ENST00000314759 RILPL2Q969X0 211 aa16.32■□□□□ 0.2
SKA3-202ENST00000314759 CCDC39Q9UFE4 941 aa16.32■□□□□ 0.2
SKA3-202ENST00000314759 SPATA31D1Q6ZQQ2 1576 aa16.32■□□□□ 0.2
SKA3-202ENST00000314759 MTHFSDQ2M296 383 aaKnown RBP16.32■□□□□ 0.2
SKA3-202ENST00000314759 DYNC1I1O14576 645 aa16.32■□□□□ 0.2
SKA3-202ENST00000314759 PRDM10Q9NQV6 1147 aa16.32■□□□□ 0.2
SKA3-202ENST00000314759 PPP6R1Q9UPN7 881 aa16.32■□□□□ 0.2
SKA3-202ENST00000314759 ITSN1Q15811 1721 aa16.32■□□□□ 0.2
SKA3-202ENST00000314759 MAP3K19Q56UN5 1328 aa16.31■□□□□ 0.2
SKA3-202ENST00000314759 TRIM6-TRIM34B2RNG4 842 aa16.31■□□□□ 0.2
SKA3-202ENST00000314759 UPF3BQ9BZI7 483 aaKnown RBP16.31■□□□□ 0.2
SKA3-202ENST00000314759 OVOS2A0A0J9YW53 1432 aa16.31■□□□□ 0.2
SKA3-202ENST00000314759 OVOS2Q6IE36 1432 aa16.31■□□□□ 0.2
SKA3-202ENST00000314759 ACEP12821 1306 aa16.31■□□□□ 0.2
SKA3-202ENST00000314759 SOX12O15370 315 aa16.31■□□□□ 0.2
SKA3-202ENST00000314759 CSPP1Q1MSJ5 1256 aa16.31■□□□□ 0.2
SKA3-202ENST00000314759 UNC5CLQ8IV45 518 aa16.31■□□□□ 0.2
SKA3-202ENST00000314759 MPNDQ8N594 471 aa16.31■□□□□ 0.2
SKA3-202ENST00000314759 TECPR2O15040 1411 aa16.3■□□□□ 0.2
SKA3-202ENST00000314759 ATP8B2P98198 1209 aa16.3■□□□□ 0.2
SKA3-202ENST00000314759 FOXD4L6Q3SYB3 417 aaPredicted RBP16.3■□□□□ 0.2
SKA3-202ENST00000314759 FOXD4L3Q6VB84 417 aaPredicted RBP16.3■□□□□ 0.2
SKA3-202ENST00000314759 RTF1Q92541 710 aaKnown RBP16.3■□□□□ 0.2
SKA3-202ENST00000314759 TSPY26PQ9H489 355 aa16.3■□□□□ 0.2
SKA3-202ENST00000314759 PEAK1Q9H792 1746 aa16.3■□□□□ 0.2
SKA3-202ENST00000314759 SASS6Q6UVJ0 657 aa16.3■□□□□ 0.2
SKA3-202ENST00000314759 GDPD2Q9HCC8 539 aa16.3■□□□□ 0.2
SKA3-202ENST00000314759 RGPD1P0DJD0 1748 aa16.3■□□□□ 0.2
SKA3-202ENST00000314759 GADD45BO75293 160 aaPredicted RBP16.29■□□□□ 0.2
SKA3-202ENST00000314759 IL17RAQ96F46 866 aa16.29■□□□□ 0.2
SKA3-202ENST00000314759 STAP2Q9UGK3 403 aa16.29■□□□□ 0.2
SKA3-202ENST00000314759 TUBGCP6Q96RT7 1819 aa16.29■□□□□ 0.2
SKA3-202ENST00000314759 TSC1Q92574 1164 aa16.29■□□□□ 0.2
SKA3-202ENST00000314759 IL25Q9H293 177 aa16.29■□□□□ 0.2
SKA3-202ENST00000314759 NUTM2FA1L443 756 aa16.29■□□□□ 0.2
SKA3-202ENST00000314759 GNAI3P08754 354 aa16.29■□□□□ 0.2
SKA3-202ENST00000314759 FLIIQ13045 1269 aa16.29■□□□□ 0.2
SKA3-202ENST00000314759 MLECQ14165 292 aa16.29■□□□□ 0.2
SKA3-202ENST00000314759 STK31Q9BXU1 1019 aa16.29■□□□□ 0.2
SKA3-202ENST00000314759 FKBP5Q13451 457 aaPredicted RBP16.28■□□□□ 0.2
SKA3-202ENST00000314759 SSH2Q76I76 1423 aa16.28■□□□□ 0.2
SKA3-202ENST00000314759 ROBO2Q9HCK4 1378 aa16.27■□□□□ 0.2
SKA3-202ENST00000314759 USP48Q86UV5 1035 aa16.27■□□□□ 0.2
SKA3-202ENST00000314759 SYAP1Q96A49 352 aaPredicted RBP16.27■□□□□ 0.2
SKA3-202ENST00000314759 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.27■□□□□ 0.19
SKA3-202ENST00000314759 ARHGEF10O15013 1369 aa16.26■□□□□ 0.19
SKA3-202ENST00000314759 USP31Q70CQ4 1352 aa16.26■□□□□ 0.19
SKA3-202ENST00000314759 NECTIN2Q92692 538 aa16.26■□□□□ 0.19
SKA3-202ENST00000314759 SRCIN1Q9C0H9 1055 aa16.26■□□□□ 0.19
SKA3-202ENST00000314759 LRRFIP2Q9Y608 721 aaKnown RBP16.26■□□□□ 0.19
SKA3-202ENST00000314759 PLEKHG3A1L390 1219 aa16.26■□□□□ 0.19
SKA3-202ENST00000314759 PTMAP06454 111 aaKnown RBP16.25■□□□□ 0.19
SKA3-202ENST00000314759 SMAP1Q8IYB5 467 aaPredicted RBP16.25■□□□□ 0.19
SKA3-202ENST00000314759 ZNF830Q96NB3 372 aaPredicted RBP16.25■□□□□ 0.19
SKA3-202ENST00000314759 USP6P35125 1406 aa16.25■□□□□ 0.19
SKA3-202ENST00000314759 AGLP35573 1532 aa16.25■□□□□ 0.19
SKA3-202ENST00000314759 WDR33Q9C0J8 1336 aaKnown RBP16.25■□□□□ 0.19
SKA3-202ENST00000314759 HSPA4P34932 840 aa16.25■□□□□ 0.19
SKA3-202ENST00000314759 CCDC30Q5VVM6 783 aa16.25■□□□□ 0.19
SKA3-202ENST00000314759 IL1RAPL2Q9NP60 686 aa16.25■□□□□ 0.19
SKA3-202ENST00000314759 RIMS1Q86UR5 1692 aaKnown RBP16.24■□□□□ 0.19
SKA3-202ENST00000314759 ZHX1Q9UKY1 873 aaPredicted RBP16.24■□□□□ 0.19
SKA3-202ENST00000314759 PHF14O94880 888 aa16.24■□□□□ 0.19
SKA3-202ENST00000314759 MTERF4Q7Z6M4 381 aaKnown RBP16.24■□□□□ 0.19
SKA3-202ENST00000314759 USP44Q9H0E7 712 aa16.24■□□□□ 0.19
SKA3-202ENST00000314759 PLEKHG5O94827 1062 aa16.23■□□□□ 0.19
SKA3-202ENST00000314759 EYA1Q99502 592 aa16.23■□□□□ 0.19
SKA3-202ENST00000314759 KDRP35968 1356 aa16.23■□□□□ 0.19
SKA3-202ENST00000314759 NALCNQ8IZF0 1738 aa16.23■□□□□ 0.19
SKA3-202ENST00000314759 RPAP1Q9BWH6 1393 aaPredicted RBP16.22■□□□□ 0.19
SKA3-202ENST00000314759 KIAA2012Q0VF49 1180 aa16.22■□□□□ 0.19
SKA3-202ENST00000314759 NUTM1Q86Y26 1132 aa16.22■□□□□ 0.19
SKA3-202ENST00000314759 C17orf53Q8N3J3 647 aaPredicted RBP16.22■□□□□ 0.19
SKA3-202ENST00000314759 AOX1Q06278 1338 aa16.22■□□□□ 0.19
SKA3-202ENST00000314759 FAM177BA6PVY3 158 aa16.22■□□□□ 0.19
SKA3-202ENST00000314759 DNTTIP2Q5QJE6 756 aaKnown RBP16.22■□□□□ 0.19
SKA3-202ENST00000314759 TCHHQ07283 1943 aa16.22■□□□□ 0.19
SKA3-202ENST00000314759 EPB41L2O43491 1005 aaKnown RBP16.22■□□□□ 0.19
SKA3-202ENST00000314759 MAP4K4O95819 1239 aaPredicted RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms