RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 SSH2Q76I76 1423 aa8.95□□□□□ -0.98
DEPDC4-201ENST00000299185 ABCA3Q99758 1704 aa8.94□□□□□ -0.98
DEPDC4-201ENST00000299185 CDCA8Q53HL2 280 aa8.94□□□□□ -0.98
DEPDC4-201ENST00000299185 TTC21BQ7Z4L5 1316 aa8.94□□□□□ -0.98
DEPDC4-201ENST00000299185 NINLQ9Y2I6 1382 aa8.94□□□□□ -0.98
DEPDC4-201ENST00000299185 EDC4Q6P2E9 1401 aaKnown RBP8.94□□□□□ -0.98
DEPDC4-201ENST00000299185 TJAP1Q5JTD0 557 aa8.93□□□□□ -0.98
DEPDC4-201ENST00000299185 CC2D1BQ5T0F9 858 aaKnown RBP8.93□□□□□ -0.98
DEPDC4-201ENST00000299185 LMOD2Q6P5Q4 547 aa8.93□□□□□ -0.98
DEPDC4-201ENST00000299185 KRT28Q7Z3Y7 464 aa8.93□□□□□ -0.98
DEPDC4-201ENST00000299185 HDGFL2Q7Z4V5 671 aaPredicted RBP8.93□□□□□ -0.98
DEPDC4-201ENST00000299185 GGNBP2Q9H3C7 697 aa8.93□□□□□ -0.98
DEPDC4-201ENST00000299185 CRYBG1Q9Y4K1 1723 aa8.93□□□□□ -0.98
DEPDC4-201ENST00000299185 PHRF1Q9P1Y6 1649 aaKnown RBP8.92□□□□□ -0.98
DEPDC4-201ENST00000299185 OVOS2A0A0J9YW53 1432 aa8.92□□□□□ -0.98
DEPDC4-201ENST00000299185 OVOS2Q6IE36 1432 aa8.92□□□□□ -0.98
DEPDC4-201ENST00000299185 FBLN1P23142 703 aa8.92□□□□□ -0.98
DEPDC4-201ENST00000299185 PUS7Q96PZ0 661 aaKnown RBP8.92□□□□□ -0.98
DEPDC4-201ENST00000299185 TERF2IPQ9NYB0 399 aa8.92□□□□□ -0.98
DEPDC4-201ENST00000299185 ANKRD26Q9UPS8 1709 aa8.91□□□□□ -0.98
DEPDC4-201ENST00000299185 PNPLA6Q8IY17 1366 aa8.91□□□□□ -0.98
DEPDC4-201ENST00000299185 SOS2Q07890 1332 aaPredicted RBP8.91□□□□□ -0.98
DEPDC4-201ENST00000299185 NPHP3Q7Z494 1330 aa8.91□□□□□ -0.98
DEPDC4-201ENST00000299185 TNNT2P45379 298 aaPredicted RBP8.91□□□□□ -0.98
DEPDC4-201ENST00000299185 PSME1Q06323 249 aa8.91□□□□□ -0.98
DEPDC4-201ENST00000299185 CABLES1Q8TDN4 633 aa8.91□□□□□ -0.98
DEPDC4-201ENST00000299185 IL21Q9HBE4 155 aa8.91□□□□□ -0.98
DEPDC4-201ENST00000299185 ZNF787Q6DD87 383 aa8.9□□□□□ -0.98
DEPDC4-201ENST00000299185 USP54Q70EL1 1684 aa8.9□□□□□ -0.98
DEPDC4-201ENST00000299185 LRP6O75581 1613 aa8.9□□□□□ -0.99
DEPDC4-201ENST00000299185 SLIT3O75094 1523 aa8.9□□□□□ -0.99
DEPDC4-201ENST00000299185 NFAT5O94916 1531 aa8.9□□□□□ -0.99
DEPDC4-201ENST00000299185 SBNO1A3KN83 1393 aa8.89□□□□□ -0.99
DEPDC4-201ENST00000299185 PEAK1Q9H792 1746 aa8.89□□□□□ -0.99
DEPDC4-201ENST00000299185 SPATA31A3Q5VYP0 1347 aa8.89□□□□□ -0.99
DEPDC4-201ENST00000299185 ZBTB7CA1YPR0 619 aa8.89□□□□□ -0.99
DEPDC4-201ENST00000299185 DPYSL4O14531 572 aa8.89□□□□□ -0.99
DEPDC4-201ENST00000299185 PER1O15534 1290 aaPredicted RBP8.89□□□□□ -0.99
DEPDC4-201ENST00000299185 CAMK2BQ13554 666 aa8.89□□□□□ -0.99
DEPDC4-201ENST00000299185 PPP1R18Q6NYC8 613 aa8.89□□□□□ -0.99
DEPDC4-201ENST00000299185 FYB1O15117 783 aa8.88□□□□□ -0.99
DEPDC4-201ENST00000299185 DDX12PQ92771 950 aa8.88□□□□□ -0.99
DEPDC4-201ENST00000299185 KNSTRNQ9Y448 316 aa8.88□□□□□ -0.99
DEPDC4-201ENST00000299185 COL22A1Q8NFW1 1626 aaPredicted RBP8.87□□□□□ -0.99
DEPDC4-201ENST00000299185 USP19O94966 1318 aa8.87□□□□□ -0.99
DEPDC4-201ENST00000299185 CGNL1Q0VF96 1302 aa8.87□□□□□ -0.99
DEPDC4-201ENST00000299185 SLC24A1O60721 1099 aa8.87□□□□□ -0.99
DEPDC4-201ENST00000299185 POTEAQ6S8J7 498 aa8.87□□□□□ -0.99
DEPDC4-201ENST00000299185 ABTB2Q8N961 1025 aa8.87□□□□□ -0.99
DEPDC4-201ENST00000299185 MTRQ99707 1265 aa8.87□□□□□ -0.99
DEPDC4-201ENST00000299185 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.87□□□□□ -0.99
DEPDC4-201ENST00000299185 TSKSQ9UJT2 592 aa8.87□□□□□ -0.99
DEPDC4-201ENST00000299185 SHPRHQ149N8 1683 aa8.87□□□□□ -0.99
DEPDC4-201ENST00000299185 USP31Q70CQ4 1352 aa8.86□□□□□ -0.99
DEPDC4-201ENST00000299185 PARD3Q8TEW0 1356 aa8.86□□□□□ -0.99
DEPDC4-201ENST00000299185 TTC21AQ8NDW8 1320 aa8.86□□□□□ -0.99
DEPDC4-201ENST00000299185 NUTM2BA6NNL0 878 aaPredicted RBP8.86□□□□□ -0.99
DEPDC4-201ENST00000299185 NUTM2EB1AL46 878 aaPredicted RBP8.86□□□□□ -0.99
DEPDC4-201ENST00000299185 RRS1Q15050 365 aaKnown RBP8.86□□□□□ -0.99
DEPDC4-201ENST00000299185 DIEXFQ68CQ4 756 aaKnown RBP8.86□□□□□ -0.99
DEPDC4-201ENST00000299185 NUTM2AQ8IVF1 878 aaPredicted RBP8.86□□□□□ -0.99
DEPDC4-201ENST00000299185 PDZRN3Q9UPQ7 1066 aa8.86□□□□□ -0.99
DEPDC4-201ENST00000299185 SRCAPQ6ZRS2 3230 aa8.86□□□□□ -0.99
DEPDC4-201ENST00000299185 GGCXP38435 758 aa8.85□□□□□ -0.99
DEPDC4-201ENST00000299185 EN1Q05925 392 aaPredicted RBP8.85□□□□□ -0.99
DEPDC4-201ENST00000299185 CCDC184Q52MB2 194 aa8.85□□□□□ -0.99
DEPDC4-201ENST00000299185 SAMD7Q7Z3H4 446 aa8.85□□□□□ -0.99
DEPDC4-201ENST00000299185 EMILIN1Q9Y6C2 1016 aa8.85□□□□□ -0.99
DEPDC4-201ENST00000299185 ARHGEF10O15013 1369 aa8.85□□□□□ -0.99
DEPDC4-201ENST00000299185 LTN1O94822 1766 aa8.84□□□□□ -0.99
DEPDC4-201ENST00000299185 MAP3K7O43318 606 aa8.84□□□□□ -0.99
DEPDC4-201ENST00000299185 CHRNA2Q15822 529 aa8.84□□□□□ -0.99
DEPDC4-201ENST00000299185 MORC1Q86VD1 984 aa8.84□□□□□ -0.99
DEPDC4-201ENST00000299185 COG3Q96JB2 828 aa8.84□□□□□ -0.99
DEPDC4-201ENST00000299185 NSD2O96028 1365 aa8.84□□□□□ -0.99
DEPDC4-201ENST00000299185 JCADQ9P266 1359 aa8.84□□□□□ -0.99
DEPDC4-201ENST00000299185 SMAPO00193 183 aa8.83□□□□□ -1
DEPDC4-201ENST00000299185 ADAMTS2O95450 1211 aa8.83□□□□□ -1
DEPDC4-201ENST00000299185 ZC3H6P61129 1189 aaKnown RBP8.83□□□□□ -1
DEPDC4-201ENST00000299185 TSR1Q2NL82 804 aaKnown RBP8.83□□□□□ -1
DEPDC4-201ENST00000299185 NECTIN2Q92692 538 aa8.83□□□□□ -1
DEPDC4-201ENST00000299185 PLCH1Q4KWH8 1693 aa8.83□□□□□ -1
DEPDC4-201ENST00000299185 KIAA0232Q92628 1395 aa8.83□□□□□ -1
DEPDC4-201ENST00000299185 NPC1L1Q9UHC9 1359 aa8.83□□□□□ -1
DEPDC4-201ENST00000299185 COL3A1P02461 1466 aaPredicted RBP8.83□□□□□ -1
DEPDC4-201ENST00000299185 MAP3K19Q56UN5 1328 aa8.82□□□□□ -1
DEPDC4-201ENST00000299185 NBR1Q14596 966 aa8.82□□□□□ -1
DEPDC4-201ENST00000299185 CDCA7LQ96GN5 454 aa8.82□□□□□ -1
DEPDC4-201ENST00000299185 PRKRIP1Q9H875 184 aaPredicted RBP8.82□□□□□ -1
DEPDC4-201ENST00000299185 BRD4O60885 1362 aaPredicted RBP8.82□□□□□ -1
DEPDC4-201ENST00000299185 LMO7Q8WWI1 1683 aa8.81□□□□□ -1
DEPDC4-201ENST00000299185 SMG6Q86US8 1419 aaKnown RBP8.81□□□□□ -1
DEPDC4-201ENST00000299185 PPM1GO15355 546 aaPredicted RBP8.81□□□□□ -1
DEPDC4-201ENST00000299185 PPP2R1AP30153 589 aa8.81□□□□□ -1
DEPDC4-201ENST00000299185 HAP1P54257 671 aaPredicted RBP8.81□□□□□ -1
DEPDC4-201ENST00000299185 PRSS12P56730 875 aa8.81□□□□□ -1
DEPDC4-201ENST00000299185 NLRP13Q86W25 1043 aa8.81□□□□□ -1
DEPDC4-201ENST00000299185 CDK12Q9NYV4 1490 aaPredicted RBP8.81□□□□□ -1
DEPDC4-201ENST00000299185 COL18A1P39060 1754 aa8.81□□□□□ -1
DEPDC4-201ENST00000299185 RGPD5Q99666 1765 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms