RNA–Protein interactions for RNA: ENST00000296682.3

PRDM9-201, Transcript of PR/SET domain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRDM9, Length 3,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9-201ENST00000296682 ALS2Q96Q42 1657 aa11.55□□□□□ -0.56
PRDM9-201ENST00000296682 HOXC9P31274 260 aa11.55□□□□□ -0.56
PRDM9-201ENST00000296682 TTC21AQ8NDW8 1320 aa11.54□□□□□ -0.56
PRDM9-201ENST00000296682 NCLP19338 710 aaKnown RBP11.54□□□□□ -0.56
PRDM9-201ENST00000296682 PIP4K2AP48426 406 aaPredicted RBP11.54□□□□□ -0.56
PRDM9-201ENST00000296682 ABCC4O15439 1325 aa11.53□□□□□ -0.56
PRDM9-201ENST00000296682 NUCB1Q02818 461 aa11.53□□□□□ -0.56
PRDM9-201ENST00000296682 SMC5Q8IY18 1101 aa11.53□□□□□ -0.56
PRDM9-201ENST00000296682 PHAXQ9H814 394 aaKnown RBP11.53□□□□□ -0.56
PRDM9-201ENST00000296682 CHL1O00533 1208 aa11.53□□□□□ -0.56
PRDM9-201ENST00000296682 ATF3P18847 181 aa11.53□□□□□ -0.56
PRDM9-201ENST00000296682 FOXD4L6Q3SYB3 417 aaPredicted RBP11.53□□□□□ -0.56
PRDM9-201ENST00000296682 NBPF6Q5VWK0 638 aa11.53□□□□□ -0.56
PRDM9-201ENST00000296682 FOXD4L3Q6VB84 417 aaPredicted RBP11.53□□□□□ -0.56
PRDM9-201ENST00000296682 NBPF4Q96M43 638 aa11.53□□□□□ -0.56
PRDM9-201ENST00000296682 RTL1A6NKG5 1358 aa11.53□□□□□ -0.56
PRDM9-201ENST00000296682 KCNQ3O43525 872 aa11.53□□□□□ -0.56
PRDM9-201ENST00000296682 SIRT2Q8IXJ6 389 aa11.53□□□□□ -0.56
PRDM9-201ENST00000296682 HMMRO75330 724 aa11.52□□□□□ -0.56
PRDM9-201ENST00000296682 CCDC30Q5VVM6 783 aa11.52□□□□□ -0.56
PRDM9-201ENST00000296682 PLEKHG2Q9H7P9 1386 aa11.52□□□□□ -0.57
PRDM9-201ENST00000296682 GCC1Q96CN9 775 aa11.52□□□□□ -0.57
PRDM9-201ENST00000296682 FLIIQ13045 1269 aa11.51□□□□□ -0.57
PRDM9-201ENST00000296682 IL17REQ8NFR9 667 aa11.51□□□□□ -0.57
PRDM9-201ENST00000296682 JARID2Q92833 1246 aaPredicted RBP11.51□□□□□ -0.57
PRDM9-201ENST00000296682 TBC1D32Q96NH3 1257 aa11.51□□□□□ -0.57
PRDM9-201ENST00000296682 MYL6BP14649 208 aa11.51□□□□□ -0.57
PRDM9-201ENST00000296682 NCOA3Q9Y6Q9 1424 aa11.51□□□□□ -0.57
PRDM9-201ENST00000296682 BTBD11A6QL63 1104 aa11.51□□□□□ -0.57
PRDM9-201ENST00000296682 SURF6O75683 361 aaKnown RBP11.51□□□□□ -0.57
PRDM9-201ENST00000296682 SLC39A6Q13433 755 aa11.51□□□□□ -0.57
PRDM9-201ENST00000296682 GSE1Q14687 1217 aa11.51□□□□□ -0.57
PRDM9-201ENST00000296682 TAF7Q15545 349 aaPredicted RBP11.51□□□□□ -0.57
PRDM9-201ENST00000296682 CASC1Q6TDU7 716 aa11.51□□□□□ -0.57
PRDM9-201ENST00000296682 KRT28Q7Z3Y7 464 aa11.5□□□□□ -0.57
PRDM9-201ENST00000296682 IBTKQ9P2D0 1353 aaPredicted RBP11.5□□□□□ -0.57
PRDM9-201ENST00000296682 PXDNLA1KZ92 1463 aa11.5□□□□□ -0.57
PRDM9-201ENST00000296682 FLT4P35916 1363 aa11.5□□□□□ -0.57
PRDM9-201ENST00000296682 TBC1D9Q6ZT07 1266 aa11.5□□□□□ -0.57
PRDM9-201ENST00000296682 LRRFIP2Q9Y608 721 aaKnown RBP11.5□□□□□ -0.57
PRDM9-201ENST00000296682 GCP02774 474 aa11.5□□□□□ -0.57
PRDM9-201ENST00000296682 UBTFL1P0CB47 393 aaPredicted RBP11.5□□□□□ -0.57
PRDM9-201ENST00000296682 NUTM1Q86Y26 1132 aa11.49□□□□□ -0.57
PRDM9-201ENST00000296682 C9orf78Q9NZ63 289 aaPredicted RBP11.49□□□□□ -0.57
PRDM9-201ENST00000296682 COL18A1P39060 1754 aa11.49□□□□□ -0.57
PRDM9-201ENST00000296682 OVOS2A0A0G2JMS6 1433 aa11.49□□□□□ -0.57
PRDM9-201ENST00000296682 GNAI2P04899 355 aa11.49□□□□□ -0.57
PRDM9-201ENST00000296682 RAPGEF4Q8WZA2 1011 aa11.49□□□□□ -0.57
PRDM9-201ENST00000296682 SBNO1A3KN83 1393 aa11.49□□□□□ -0.57
PRDM9-201ENST00000296682 IL27Q8NEV9 243 aa11.49□□□□□ -0.57
PRDM9-201ENST00000296682 RGPD2P0DJD1 1756 aa11.49□□□□□ -0.57
PRDM9-201ENST00000296682 CHPF2Q9P2E5 772 aa11.48□□□□□ -0.57
PRDM9-201ENST00000296682 BRPF3Q9ULD4 1205 aa11.48□□□□□ -0.57
PRDM9-201ENST00000296682 PARP4Q9UKK3 1724 aaKnown RBP11.48□□□□□ -0.57
PRDM9-201ENST00000296682 PI4KAP2A4QPH2 592 aa11.48□□□□□ -0.57
PRDM9-201ENST00000296682 PI4KAP1Q8N8J0 262 aa11.48□□□□□ -0.57
PRDM9-201ENST00000296682 ANKRD24Q8TF21 1146 aa11.48□□□□□ -0.57
PRDM9-201ENST00000296682 CHMP3Q9Y3E7 222 aa11.48□□□□□ -0.57
PRDM9-201ENST00000296682 SOS1Q07889 1333 aaPredicted RBP11.47□□□□□ -0.57
PRDM9-201ENST00000296682 PLEKHO1Q53GL0 409 aaPredicted RBP11.47□□□□□ -0.57
PRDM9-201ENST00000296682 ANO2Q9NQ90 1003 aa11.47□□□□□ -0.57
PRDM9-201ENST00000296682 STRN4Q9NRL3 753 aa11.47□□□□□ -0.57
PRDM9-201ENST00000296682 ATP10DQ9P241 1426 aa11.47□□□□□ -0.57
PRDM9-201ENST00000296682 CDC45O75419 566 aa11.47□□□□□ -0.57
PRDM9-201ENST00000296682 CEP85Q6P2H3 762 aa11.47□□□□□ -0.57
PRDM9-201ENST00000296682 MSH6P52701 1360 aa11.47□□□□□ -0.57
PRDM9-201ENST00000296682 SIL1Q9H173 461 aa11.47□□□□□ -0.57
PRDM9-201ENST00000296682 TAOK2Q9UL54 1235 aa11.47□□□□□ -0.57
PRDM9-201ENST00000296682 PRAMEF22A3QJZ6 481 aa11.46□□□□□ -0.57
PRDM9-201ENST00000296682 SRGAP3O43295 1099 aa11.46□□□□□ -0.57
PRDM9-201ENST00000296682 DTNBO60941 627 aa11.46□□□□□ -0.57
PRDM9-201ENST00000296682 IGSF1Q8N6C5 1336 aa11.46□□□□□ -0.57
PRDM9-201ENST00000296682 RPAP2Q8IXW5 612 aaPredicted RBP11.46□□□□□ -0.57
PRDM9-201ENST00000296682 DDX54Q8TDD1 881 aaKnown RBP11.46□□□□□ -0.58
PRDM9-201ENST00000296682 PNMA6EA0A0J9YXQ4 647 aa11.45□□□□□ -0.58
PRDM9-201ENST00000296682 CCT4P50991 539 aaKnown RBP11.45□□□□□ -0.58
PRDM9-201ENST00000296682 PLEKHM2Q8IWE5 1019 aa11.45□□□□□ -0.58
PRDM9-201ENST00000296682 ADGRL3Q9HAR2 1447 aa11.45□□□□□ -0.58
PRDM9-201ENST00000296682 STRCP1A6NGW2 1772 aa11.45□□□□□ -0.58
PRDM9-201ENST00000296682 PKD1L3Q7Z443 1732 aa11.45□□□□□ -0.58
PRDM9-201ENST00000296682 ANKRD44Q8N8A2 993 aa11.45□□□□□ -0.58
PRDM9-201ENST00000296682 SRCIN1Q9C0H9 1055 aa11.45□□□□□ -0.58
PRDM9-201ENST00000296682 SDSP20132 328 aa11.45□□□□□ -0.58
PRDM9-201ENST00000296682 LARP6Q9BRS8 491 aaKnown RBP11.45□□□□□ -0.58
PRDM9-201ENST00000296682 XIRP1Q702N8 1843 aaKnown RBP11.45□□□□□ -0.58
PRDM9-201ENST00000296682 HTATSF1O43719 755 aaKnown RBP11.44□□□□□ -0.58
PRDM9-201ENST00000296682 DCTPP1Q9H773 170 aa11.44□□□□□ -0.58
PRDM9-201ENST00000296682 BABAM1Q9NWV8 329 aa11.44□□□□□ -0.58
PRDM9-201ENST00000296682 GNAI3P08754 354 aa11.44□□□□□ -0.58
PRDM9-201ENST00000296682 RIC3Q7Z5B4 369 aa11.44□□□□□ -0.58
PRDM9-201ENST00000296682 KCNH5Q8NCM2 988 aa11.44□□□□□ -0.58
PRDM9-201ENST00000296682 SCN11AQ9UI33 1791 aa11.44□□□□□ -0.58
PRDM9-201ENST00000296682 BMP2KLQ5H9B9 411 aa11.44□□□□□ -0.58
PRDM9-201ENST00000296682 IP6K1Q92551 441 aa11.44□□□□□ -0.58
PRDM9-201ENST00000296682 LRRCC1Q9C099 1032 aa11.44□□□□□ -0.58
PRDM9-201ENST00000296682 AXIN2Q9Y2T1 843 aa11.44□□□□□ -0.58
PRDM9-201ENST00000296682 KCNJ4P48050 445 aa11.43□□□□□ -0.58
PRDM9-201ENST00000296682 INTS3Q68E01 1043 aaKnown RBP11.43□□□□□ -0.58
PRDM9-201ENST00000296682 ANTXR1Q9H6X2 564 aa11.43□□□□□ -0.58
PRDM9-201ENST00000296682 PTCD1O75127 700 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms