RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 IFIT1P09914 478 aaKnown RBP10.85□□□□□ -0.67
CUX1-201ENST00000292535 CASTP20810 708 aaKnown RBP10.85□□□□□ -0.67
CUX1-201ENST00000292535 PDZRN3Q9UPQ7 1066 aa10.85□□□□□ -0.67
CUX1-201ENST00000292535 CRACR2AQ9BSW2 395 aa10.85□□□□□ -0.67
CUX1-201ENST00000292535 TMCO3Q6UWJ1 677 aa10.85□□□□□ -0.67
CUX1-201ENST00000292535 FGD6Q6ZV73 1430 aa10.85□□□□□ -0.67
CUX1-201ENST00000292535 LRRC45Q96CN5 670 aa10.85□□□□□ -0.67
CUX1-201ENST00000292535 USO1O60763 962 aaKnown RBP10.84□□□□□ -0.67
CUX1-201ENST00000292535 SHTN1A0MZ66 631 aa10.84□□□□□ -0.67
CUX1-201ENST00000292535 COMMD10Q9Y6G5 202 aa10.84□□□□□ -0.67
CUX1-201ENST00000292535 FSD2A1L4K1 749 aa10.84□□□□□ -0.67
CUX1-201ENST00000292535 POLR3DP05423 398 aaPredicted RBP10.84□□□□□ -0.67
CUX1-201ENST00000292535 ANKLE2Q86XL3 938 aa10.84□□□□□ -0.67
CUX1-201ENST00000292535 PRDM11Q9NQV5 511 aa10.84□□□□□ -0.67
CUX1-201ENST00000292535 DDX12PQ92771 950 aa10.84□□□□□ -0.67
CUX1-201ENST00000292535 CDK19Q9BWU1 502 aa10.84□□□□□ -0.67
CUX1-201ENST00000292535 ATAD2Q6PL18 1390 aa10.84□□□□□ -0.67
CUX1-201ENST00000292535 KIF20AO95235 890 aa10.84□□□□□ -0.67
CUX1-201ENST00000292535 HMGB1P09429 215 aaKnown RBP10.84□□□□□ -0.67
CUX1-201ENST00000292535 KIF5BP33176 963 aa10.84□□□□□ -0.67
CUX1-201ENST00000292535 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.84□□□□□ -0.679e-8■■■■■ 27.8
CUX1-201ENST00000292535 CFAP100Q494V2 611 aa10.84□□□□□ -0.67
CUX1-201ENST00000292535 CWC27Q6UX04 472 aaKnown RBP10.84□□□□□ -0.67
CUX1-201ENST00000292535 PRAM1Q96QH2 718 aa10.84□□□□□ -0.67
CUX1-201ENST00000292535 RNF41Q9H4P4 317 aaPredicted RBP10.84□□□□□ -0.67
CUX1-201ENST00000292535 IFFO1Q0D2I5 559 aa10.83□□□□□ -0.68
CUX1-201ENST00000292535 KIF5CO60282 957 aa10.83□□□□□ -0.68
CUX1-201ENST00000292535 PPP2R1AP30153 589 aa10.83□□□□□ -0.68
CUX1-201ENST00000292535 RTEL1-TNFRSF6BF6WH68 1400 aa10.83□□□□□ -0.68
CUX1-201ENST00000292535 MVPQ14764 893 aaKnown RBP10.83□□□□□ -0.68
CUX1-201ENST00000292535 THEMISQ8N1K5 641 aaPredicted RBP10.83□□□□□ -0.68
CUX1-201ENST00000292535 RP1L1Q8IWN7 2480 aaPredicted RBP10.83□□□□□ -0.68
CUX1-201ENST00000292535 METTL24Q5JXM2 366 aa10.83□□□□□ -0.68
CUX1-201ENST00000292535 GIMAP7Q8NHV1 300 aa10.83□□□□□ -0.68
CUX1-201ENST00000292535 MAP3K12Q12852 859 aa10.83□□□□□ -0.68
CUX1-201ENST00000292535 GRPEL1Q9HAV7 217 aa10.83□□□□□ -0.68
CUX1-201ENST00000292535 PDCL2Q8N4E4 241 aa10.83□□□□□ -0.68
CUX1-201ENST00000292535 SCAND2PQ9GZW5 306 aaPredicted RBP10.83□□□□□ -0.68
CUX1-201ENST00000292535 SLC52A1Q9NWF4 448 aa10.83□□□□□ -0.68
CUX1-201ENST00000292535 POTEB2H3BUK9 544 aa10.83□□□□□ -0.68
CUX1-201ENST00000292535 SPATA24Q86W54 205 aa10.83□□□□□ -0.68
CUX1-201ENST00000292535 SREK1Q8WXA9 508 aaKnown RBP10.83□□□□□ -0.68
CUX1-201ENST00000292535 SSX2IPQ9Y2D8 614 aa10.83□□□□□ -0.68
CUX1-201ENST00000292535 PYM1Q9BRP8 204 aaKnown RBP10.82□□□□□ -0.68
CUX1-201ENST00000292535 FERMT2Q96AC1 680 aa10.82□□□□□ -0.68
CUX1-201ENST00000292535 SUPT6HQ7KZ85 1726 aaKnown RBP10.82□□□□□ -0.68
CUX1-201ENST00000292535 UQCRHLA0A096LP55 91 aa10.82□□□□□ -0.68
CUX1-201ENST00000292535 UQCRHP07919 91 aa10.82□□□□□ -0.68
CUX1-201ENST00000292535 NAA15Q9BXJ9 866 aaKnown RBP10.82□□□□□ -0.68
CUX1-201ENST00000292535 C1orf115Q9H7X2 142 aa10.82□□□□□ -0.68
CUX1-201ENST00000292535 SULT6B1Q6IMI4 303 aa10.82□□□□□ -0.68
CUX1-201ENST00000292535 CFAP57Q96MR6 1250 aa10.82□□□□□ -0.68
CUX1-201ENST00000292535 CCDC83Q8IWF9 413 aa10.82□□□□□ -0.68
CUX1-201ENST00000292535 FAM177A1Q8N128 213 aaPredicted RBP10.82□□□□□ -0.68
CUX1-201ENST00000292535 YEATS4O95619 227 aa10.81□□□□□ -0.68
CUX1-201ENST00000292535 ZNF444Q8N0Y2 327 aaPredicted RBP10.81□□□□□ -0.68
CUX1-201ENST00000292535 RAB11FIP3O75154 756 aa10.81□□□□□ -0.68
CUX1-201ENST00000292535 CASQ1P31415 396 aa10.81□□□□□ -0.68
CUX1-201ENST00000292535 RPGRQ92834 1020 aaKnown RBP10.81□□□□□ -0.68
CUX1-201ENST00000292535 SRGAP3O43295 1099 aa10.81□□□□□ -0.68
CUX1-201ENST00000292535 KIF4AO95239 1232 aa10.81□□□□□ -0.68
CUX1-201ENST00000292535 KIF18AQ8NI77 898 aa10.81□□□□□ -0.68
CUX1-201ENST00000292535 NUMA1Q14980 2115 aa10.81□□□□□ -0.68
CUX1-201ENST00000292535 CCDC175P0C221 793 aa10.81□□□□□ -0.68
CUX1-201ENST00000292535 DHX37Q8IY37 1157 aaKnown RBP10.81□□□□□ -0.68
CUX1-201ENST00000292535 KCNH5Q8NCM2 988 aa10.81□□□□□ -0.68
CUX1-201ENST00000292535 CACNA2D4Q7Z3S7 1137 aa10.81□□□□□ -0.68
CUX1-201ENST00000292535 CATIPQ7Z7H3 387 aa10.81□□□□□ -0.68
CUX1-201ENST00000292535 CTCFLQ8NI51 663 aaPredicted RBP10.81□□□□□ -0.68
CUX1-201ENST00000292535 MAP3K11Q16584 847 aa10.8□□□□□ -0.68
CUX1-201ENST00000292535 MKNK2Q9HBH9 465 aa10.8□□□□□ -0.68
CUX1-201ENST00000292535 IDH1O75874 414 aaKnown RBP10.8□□□□□ -0.68
CUX1-201ENST00000292535 SLC5A1P13866 664 aa10.8□□□□□ -0.68
CUX1-201ENST00000292535 PIBF1Q8WXW3 757 aa10.8□□□□□ -0.68
CUX1-201ENST00000292535 KIF1BPQ96EK5 621 aa10.8□□□□□ -0.68
CUX1-201ENST00000292535 DDX11Q96FC9 970 aa10.8□□□□□ -0.68
CUX1-201ENST00000292535 RPGRIP1LQ68CZ1 1315 aa10.8□□□□□ -0.68
CUX1-201ENST00000292535 MACROD2A1Z1Q3 448 aa10.8□□□□□ -0.68
CUX1-201ENST00000292535 TTLL12Q14166 644 aaPredicted RBP10.8□□□□□ -0.68
CUX1-201ENST00000292535 BICDL1Q6ZP65 573 aa10.8□□□□□ -0.68
CUX1-201ENST00000292535 LRRC27Q9C0I9 530 aa10.8□□□□□ -0.68
CUX1-201ENST00000292535 IKBKGQ9Y6K9 419 aa10.8□□□□□ -0.68
CUX1-201ENST00000292535 LARP1Q6PKG0 1096 aaKnown RBP10.8□□□□□ -0.68
CUX1-201ENST00000292535 TSNARE1Q96NA8 513 aa10.8□□□□□ -0.68
CUX1-201ENST00000292535 FCHSD2O94868 740 aa10.79□□□□□ -0.68
CUX1-201ENST00000292535 CCDC172P0C7W6 258 aa10.79□□□□□ -0.68
CUX1-201ENST00000292535 SPECC1LQ69YQ0 1117 aa10.79□□□□□ -0.68
CUX1-201ENST00000292535 CHD1LQ86WJ1 897 aa10.79□□□□□ -0.68
CUX1-201ENST00000292535 ANKRD30BQ9BXX2 1392 aa10.79□□□□□ -0.68
CUX1-201ENST00000292535 POLR3GO15318 223 aaPredicted RBP10.79□□□□□ -0.68
CUX1-201ENST00000292535 EXOSC9Q06265 439 aaKnown RBP10.79□□□□□ -0.68
CUX1-201ENST00000292535 EHBP1Q8NDI1 1231 aa10.79□□□□□ -0.68
CUX1-201ENST00000292535 BAZ2BQ9UIF8 2168 aaKnown RBP10.79□□□□□ -0.68
CUX1-201ENST00000292535 UBA5Q9GZZ9 404 aa10.79□□□□□ -0.68
CUX1-201ENST00000292535 GNAT3A8MTJ3 354 aa10.79□□□□□ -0.68
CUX1-201ENST00000292535 CTNNA2P26232 953 aa10.79□□□□□ -0.68
CUX1-201ENST00000292535 FAM114A1Q8IWE2 563 aa10.79□□□□□ -0.68
CUX1-201ENST00000292535 SLC12A7Q9Y666 1083 aa10.79□□□□□ -0.68
CUX1-201ENST00000292535 AMPD3Q01432 767 aa10.79□□□□□ -0.68
CUX1-201ENST00000292535 NAPBQ9H115 298 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 150.7 ms