RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 RTN4Q9NQC3 1192 aaKnown RBP22.7■■□□□ 1.22
SHKBP1-201ENST00000291842 NCOA3Q9Y6Q9 1424 aa22.7■■□□□ 1.22
SHKBP1-201ENST00000291842 HSP90AA1P07900 732 aaKnown RBP22.69■■□□□ 1.22
SHKBP1-201ENST00000291842 DDIT3P35638 169 aa22.69■■□□□ 1.22
SHKBP1-201ENST00000291842 FAM208AQ9UK61 1670 aaKnown RBP22.68■■□□□ 1.22
SHKBP1-201ENST00000291842 ADGRL3Q9HAR2 1447 aa22.68■■□□□ 1.22
SHKBP1-201ENST00000291842 NFAT5O94916 1531 aa22.68■■□□□ 1.22
SHKBP1-201ENST00000291842 KCNQ3O43525 872 aa22.67■■□□□ 1.22
SHKBP1-201ENST00000291842 GZF1Q9H116 711 aaPredicted RBP22.67■■□□□ 1.22
SHKBP1-201ENST00000291842 LRRFIP2Q9Y608 721 aaKnown RBP22.67■■□□□ 1.22
SHKBP1-201ENST00000291842 K7ELQ4 463 aaPredicted RBP22.67■■□□□ 1.22
SHKBP1-201ENST00000291842 GNAI3P08754 354 aa22.67■■□□□ 1.22
SHKBP1-201ENST00000291842 USP26Q9BXU7 913 aa22.67■■□□□ 1.22
SHKBP1-201ENST00000291842 PDE1AP54750 535 aa22.66■■□□□ 1.22
SHKBP1-201ENST00000291842 KCNH5Q8NCM2 988 aa22.65■■□□□ 1.22
SHKBP1-201ENST00000291842 MPRIPQ6WCQ1 1025 aa22.65■■□□□ 1.22
SHKBP1-201ENST00000291842 ARXQ96QS3 562 aa22.65■■□□□ 1.22
SHKBP1-201ENST00000291842 USP44Q9H0E7 712 aa22.64■■□□□ 1.22
SHKBP1-201ENST00000291842 BABAM1Q9NWV8 329 aa22.64■■□□□ 1.22
SHKBP1-201ENST00000291842 RGPD2P0DJD1 1756 aa22.64■■□□□ 1.22
SHKBP1-201ENST00000291842 CEMIPQ8WUJ3 1361 aa22.64■■□□□ 1.21
SHKBP1-201ENST00000291842 GCP02774 474 aa22.64■■□□□ 1.21
SHKBP1-201ENST00000291842 ZNF530Q6P9A1 599 aaPredicted RBP22.64■■□□□ 1.21
SHKBP1-201ENST00000291842 EIF4A1P60842 406 aaKnown RBP22.63■■□□□ 1.21
SHKBP1-201ENST00000291842 ATP8B2P98198 1209 aa22.63■■□□□ 1.21
SHKBP1-201ENST00000291842 CASC1Q6TDU7 716 aa22.63■■□□□ 1.21
SHKBP1-201ENST00000291842 ANXA1P04083 346 aa22.63■■□□□ 1.21
SHKBP1-201ENST00000291842 LRRCC1Q9C099 1032 aa22.63■■□□□ 1.21
SHKBP1-201ENST00000291842 TNPO1Q92973 898 aaKnown RBP22.62■■□□□ 1.21
SHKBP1-201ENST00000291842 CHPF2Q9P2E5 772 aa22.62■■□□□ 1.21
SHKBP1-201ENST00000291842 UBTFL1P0CB47 393 aaPredicted RBP22.61■■□□□ 1.21
SHKBP1-201ENST00000291842 NPHP4O75161 1426 aaPredicted RBP22.61■■□□□ 1.21
SHKBP1-201ENST00000291842 TRAK2O60296 914 aa22.61■■□□□ 1.21
SHKBP1-201ENST00000291842 TEFQ10587 303 aa22.61■■□□□ 1.21
SHKBP1-201ENST00000291842 ZNF142P52746 1687 aaPredicted RBP22.61■■□□□ 1.21
SHKBP1-201ENST00000291842 SOS1Q07889 1333 aaPredicted RBP22.6■■□□□ 1.21
SHKBP1-201ENST00000291842 BTBD11A6QL63 1104 aa22.6■■□□□ 1.21
SHKBP1-201ENST00000291842 OSBPL3Q9H4L5 887 aa22.6■■□□□ 1.21
SHKBP1-201ENST00000291842 RABEP1Q15276 862 aa22.59■■□□□ 1.21
SHKBP1-201ENST00000291842 ARHGEF25Q86VW2 580 aa22.59■■□□□ 1.21
SHKBP1-201ENST00000291842 AXIN2Q9Y2T1 843 aa22.58■■□□□ 1.21
SHKBP1-201ENST00000291842 MX1P20591 662 aa22.58■■□□□ 1.21
SHKBP1-201ENST00000291842 PLEKHO1Q53GL0 409 aaPredicted RBP22.58■■□□□ 1.21
SHKBP1-201ENST00000291842 AKAP4Q5JQC9 854 aa22.58■■□□□ 1.21
SHKBP1-201ENST00000291842 RAB3GAP1Q15042 981 aa22.57■■□□□ 1.2
SHKBP1-201ENST00000291842 ANKRD24Q8TF21 1146 aa22.57■■□□□ 1.2
SHKBP1-201ENST00000291842 IL1RAPL2Q9NP60 686 aa22.57■■□□□ 1.2
SHKBP1-201ENST00000291842 CACNA1FO60840 1977 aa22.57■■□□□ 1.2
SHKBP1-201ENST00000291842 IBTKQ9P2D0 1353 aaPredicted RBP22.57■■□□□ 1.2
SHKBP1-201ENST00000291842 ERC2O15083 957 aa22.57■■□□□ 1.2
SHKBP1-201ENST00000291842 PROSER2Q86WR7 435 aaPredicted RBP22.57■■□□□ 1.2
SHKBP1-201ENST00000291842 SRCIN1Q9C0H9 1055 aa22.57■■□□□ 1.2
SHKBP1-201ENST00000291842 CIZ1Q9ULV3 898 aaPredicted RBP22.57■■□□□ 1.2
SHKBP1-201ENST00000291842 SALL3Q9BXA9 1300 aa22.56■■□□□ 1.2
SHKBP1-201ENST00000291842 PI4KAP2A4QPH2 592 aa22.56■■□□□ 1.2
SHKBP1-201ENST00000291842 EIF5BO60841 1220 aaKnown RBP22.56■■□□□ 1.2
SHKBP1-201ENST00000291842 PI4KAP1Q8N8J0 262 aa22.56■■□□□ 1.2
SHKBP1-201ENST00000291842 RILPL2Q969X0 211 aa22.56■■□□□ 1.2
SHKBP1-201ENST00000291842 TRIM6-TRIM34B2RNG4 842 aa22.55■■□□□ 1.2
SHKBP1-201ENST00000291842 REC8O95072 547 aa22.55■■□□□ 1.2
SHKBP1-201ENST00000291842 NBPF7P0C2Y1 421 aaPredicted RBP22.55■■□□□ 1.2
SHKBP1-201ENST00000291842 C1orf141Q5JVX7 400 aa22.55■■□□□ 1.2
SHKBP1-201ENST00000291842 PXDNQ92626 1479 aa22.55■■□□□ 1.2
SHKBP1-201ENST00000291842 KRT28Q7Z3Y7 464 aa22.55■■□□□ 1.2
SHKBP1-201ENST00000291842 PPP1R42Q7Z4L9 355 aa22.55■■□□□ 1.2
SHKBP1-201ENST00000291842 DDX11L8A8MPP1 907 aa22.54■■□□□ 1.2
SHKBP1-201ENST00000291842 RNMTO43148 476 aaKnown RBP22.54■■□□□ 1.2
SHKBP1-201ENST00000291842 SSFA2P28290 1259 aa22.54■■□□□ 1.2
SHKBP1-201ENST00000291842 ADAMTSL3P82987 1691 aa22.53■■□□□ 1.2
SHKBP1-201ENST00000291842 ZC3H6P61129 1189 aaKnown RBP22.53■■□□□ 1.2
SHKBP1-201ENST00000291842 PXDNLA1KZ92 1463 aa22.53■■□□□ 1.2
SHKBP1-201ENST00000291842 MED1Q15648 1581 aaPredicted RBP22.53■■□□□ 1.2
SHKBP1-201ENST00000291842 PRAMEF22A3QJZ6 481 aa22.53■■□□□ 1.2
SHKBP1-201ENST00000291842 SURF6O75683 361 aaKnown RBP22.53■■□□□ 1.2
SHKBP1-201ENST00000291842 NUTM1Q86Y26 1132 aa22.53■■□□□ 1.2
SHKBP1-201ENST00000291842 DNAAF4Q8WXU2 420 aa22.53■■□□□ 1.2
SHKBP1-201ENST00000291842 AMOTQ4VCS5 1084 aa22.52■■□□□ 1.2
SHKBP1-201ENST00000291842 UNC5CLQ8IV45 518 aa22.52■■□□□ 1.2
SHKBP1-201ENST00000291842 BEND3Q5T5X7 828 aa22.52■■□□□ 1.19
SHKBP1-201ENST00000291842 SSH3Q8TE77 659 aa22.52■■□□□ 1.19
SHKBP1-201ENST00000291842 SRGAP3O43295 1099 aa22.51■■□□□ 1.19
SHKBP1-201ENST00000291842 GBP4Q96PP9 640 aa22.51■■□□□ 1.19
SHKBP1-201ENST00000291842 DDX17Q92841 729 aaKnown RBP22.5■■□□□ 1.19
SHKBP1-201ENST00000291842 KDM3BQ7LBC6 1761 aa22.5■■□□□ 1.19
SHKBP1-201ENST00000291842 HOXB7P09629 217 aa22.5■■□□□ 1.19
SHKBP1-201ENST00000291842 PROSER3Q2NL68 480 aa22.5■■□□□ 1.19
SHKBP1-201ENST00000291842 ESYT1Q9BSJ8 1104 aa22.49■■□□□ 1.19
SHKBP1-201ENST00000291842 AK9Q5TCS8 1911 aa22.49■■□□□ 1.19
SHKBP1-201ENST00000291842 MAP4K4O95819 1239 aaPredicted RBP22.49■■□□□ 1.19
SHKBP1-201ENST00000291842 LMO7Q8WWI1 1683 aa22.48■■□□□ 1.19
SHKBP1-201ENST00000291842 GOLGA6L3A6NEY3 463 aa22.48■■□□□ 1.19
SHKBP1-201ENST00000291842 ADCY9O60503 1353 aa22.48■■□□□ 1.19
SHKBP1-201ENST00000291842 ST18O60284 1047 aa22.48■■□□□ 1.19
SHKBP1-201ENST00000291842 PHRF1Q9P1Y6 1649 aaKnown RBP22.48■■□□□ 1.19
SHKBP1-201ENST00000291842 N4BP2Q86UW6 1770 aaPredicted RBP22.47■■□□□ 1.19
SHKBP1-201ENST00000291842 CHMLP26374 656 aa22.47■■□□□ 1.19
SHKBP1-201ENST00000291842 POLA2Q14181 598 aa22.47■■□□□ 1.19
SHKBP1-201ENST00000291842 L1TD1Q5T7N2 865 aaKnown RBP22.47■■□□□ 1.19
SHKBP1-201ENST00000291842 STAP2Q9UGK3 403 aa22.47■■□□□ 1.19
SHKBP1-201ENST00000291842 SLIT3O75094 1523 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 325.8 ms