RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 PRPF40AO75400 957 aaKnown RBP21.91■■□□□ 1.1
PCDH1-201ENST00000287008 CRACR2BQ8N4Y2 399 aaPredicted RBP21.91■■□□□ 1.1
PCDH1-201ENST00000287008 BOLA2Q9H3K6 86 aa21.91■■□□□ 1.1
PCDH1-201ENST00000287008 MAGEC2Q9UBF1 373 aaPredicted RBP21.91■■□□□ 1.1
PCDH1-201ENST00000287008 NFKBIBQ15653 356 aa21.91■■□□□ 1.1
PCDH1-201ENST00000287008 POLR3DP05423 398 aaPredicted RBP21.9■■□□□ 1.1
PCDH1-201ENST00000287008 SLC5A1P13866 664 aa21.9■■□□□ 1.1
PCDH1-201ENST00000287008 CAVIN1Q6NZI2 390 aaKnown RBP21.9■■□□□ 1.1
PCDH1-201ENST00000287008 ZHX3Q9H4I2 956 aa21.9■■□□□ 1.1
PCDH1-201ENST00000287008 KRI1Q8N9T8 703 aaKnown RBP21.9■■□□□ 1.1
PCDH1-201ENST00000287008 TRIM5Q9C035 493 aa21.9■■□□□ 1.1
PCDH1-201ENST00000287008 C6orf229H3BNL8 230 aa21.88■■□□□ 1.09
PCDH1-201ENST00000287008 K7ELQ4 463 aaPredicted RBP21.88■■□□□ 1.09
PCDH1-201ENST00000287008 NAPBQ9H115 298 aa21.88■■□□□ 1.09
PCDH1-201ENST00000287008 MKNK2Q9HBH9 465 aa21.88■■□□□ 1.09
PCDH1-201ENST00000287008 MINDY4BA8MYZ0 360 aa21.88■■□□□ 1.09
PCDH1-201ENST00000287008 SNRPA1P09661 255 aaKnown RBP21.88■■□□□ 1.09
PCDH1-201ENST00000287008 CDC5LQ99459 802 aaKnown RBP21.88■■□□□ 1.09
PCDH1-201ENST00000287008 THOC2Q8NI27 1593 aaKnown RBP21.88■■□□□ 1.09
PCDH1-201ENST00000287008 LRRFIP2Q9Y608 721 aaKnown RBP21.87■■□□□ 1.09
PCDH1-201ENST00000287008 ZNF518AQ6AHZ1 1483 aa21.87■■□□□ 1.09
PCDH1-201ENST00000287008 BMP2KQ9NSY1 1161 aaPredicted RBP21.87■■□□□ 1.09
PCDH1-201ENST00000287008 STIM1Q13586 685 aa21.87■■□□□ 1.09
PCDH1-201ENST00000287008 WASF1Q92558 559 aa21.87■■□□□ 1.09
PCDH1-201ENST00000287008 FAM13BQ9NYF5 915 aa21.87■■□□□ 1.09
PCDH1-201ENST00000287008 ANKRD36BQ8N2N9 1353 aa21.87■■□□□ 1.09
PCDH1-201ENST00000287008 TRAK2O60296 914 aa21.87■■□□□ 1.09
PCDH1-201ENST00000287008 WDHD1O75717 1129 aaPredicted RBP21.87■■□□□ 1.09
PCDH1-201ENST00000287008 HSP90AB2PQ58FF8 381 aa21.86■■□□□ 1.09
PCDH1-201ENST00000287008 LDHAL6AQ6ZMR3 332 aa21.86■■□□□ 1.09
PCDH1-201ENST00000287008 MPHOSPH10O00566 681 aaKnown RBP21.86■■□□□ 1.09
PCDH1-201ENST00000287008 C19orf44Q9H6X5 657 aa21.86■■□□□ 1.09
PCDH1-201ENST00000287008 CCDC173Q0VFZ6 552 aa21.86■■□□□ 1.09
PCDH1-201ENST00000287008 PTPRCP08575 1304 aa21.86■■□□□ 1.09
PCDH1-201ENST00000287008 ZCRB1Q8TBF4 217 aaKnown RBP21.86■■□□□ 1.09
PCDH1-201ENST00000287008 ZNF76P36508 570 aa21.85■■□□□ 1.09
PCDH1-201ENST00000287008 PPP1R42Q7Z4L9 355 aa21.85■■□□□ 1.09
PCDH1-201ENST00000287008 CCDC8Q9H0W5 538 aaPredicted RBP21.85■■□□□ 1.09
PCDH1-201ENST00000287008 RFC4P35249 363 aa21.85■■□□□ 1.09
PCDH1-201ENST00000287008 SLF2Q8IX21 1173 aa21.85■■□□□ 1.09
PCDH1-201ENST00000287008 CWC25Q9NXE8 425 aaPredicted RBP21.85■■□□□ 1.09
PCDH1-201ENST00000287008 ZNF219Q9P2Y4 722 aaPredicted RBP21.85■■□□□ 1.09
PCDH1-201ENST00000287008 SSBP05455 408 aaKnown RBP eCLIP21.84■■□□□ 1.09
PCDH1-201ENST00000287008 NASPP49321 788 aaPredicted RBP21.84■■□□□ 1.09
PCDH1-201ENST00000287008 BRPF1P55201 1214 aaPredicted RBP21.84■■□□□ 1.09
PCDH1-201ENST00000287008 DDX46Q7L014 1031 aaKnown RBP21.84■■□□□ 1.09
PCDH1-201ENST00000287008 BACH2Q9BYV9 841 aa21.84■■□□□ 1.09
PCDH1-201ENST00000287008 SMC2O95347 1197 aa21.84■■□□□ 1.09
PCDH1-201ENST00000287008 PDIA4P13667 645 aaKnown RBP21.84■■□□□ 1.09
PCDH1-201ENST00000287008 SYCP1Q15431 976 aa21.84■■□□□ 1.09
PCDH1-201ENST00000287008 MNS1Q8NEH6 495 aa21.84■■□□□ 1.09
PCDH1-201ENST00000287008 WDR7Q9Y4E6 1490 aa21.84■■□□□ 1.09
PCDH1-201ENST00000287008 ATP5J2-PTCD1G3V325 749 aa21.83■■□□□ 1.09
PCDH1-201ENST00000287008 UBE3BQ7Z3V4 1068 aa21.83■■□□□ 1.09
PCDH1-201ENST00000287008 PI4KAP2A4QPH2 592 aa21.83■■□□□ 1.09
PCDH1-201ENST00000287008 HSPA2P54652 639 aa21.83■■□□□ 1.09
PCDH1-201ENST00000287008 PI4KAP1Q8N8J0 262 aa21.83■■□□□ 1.09
PCDH1-201ENST00000287008 PIBF1Q8WXW3 757 aa21.83■■□□□ 1.09
PCDH1-201ENST00000287008 MAP3K2Q9Y2U5 619 aa21.83■■□□□ 1.08
PCDH1-201ENST00000287008 SMARCA5O60264 1052 aaPredicted RBP21.83■■□□□ 1.08
PCDH1-201ENST00000287008 MRE11P49959 708 aa21.83■■□□□ 1.08
PCDH1-201ENST00000287008 SMARCE1Q969G3 411 aa21.83■■□□□ 1.08
PCDH1-201ENST00000287008 RIMS2Q9UQ26 1411 aa21.82■■□□□ 1.08
PCDH1-201ENST00000287008 CFAP45Q9UL16 551 aa21.82■■□□□ 1.08
PCDH1-201ENST00000287008 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.82■■□□□ 1.08
PCDH1-201ENST00000287008 CASTP20810 708 aaKnown RBP21.81■■□□□ 1.08
PCDH1-201ENST00000287008 IQCA1Q86XH1 822 aa21.81■■□□□ 1.08
PCDH1-201ENST00000287008 PDCL3Q9H2J4 239 aa21.81■■□□□ 1.08
PCDH1-201ENST00000287008 CCDC196A0A1B0GTZ2 297 aa21.81■■□□□ 1.08
PCDH1-201ENST00000287008 FAM83GA6ND36 823 aa21.81■■□□□ 1.08
PCDH1-201ENST00000287008 LDHCP07864 332 aa21.8■■□□□ 1.08
PCDH1-201ENST00000287008 FBLN1P23142 703 aa21.8■■□□□ 1.08
PCDH1-201ENST00000287008 PAF1Q8N7H5 531 aa21.8■■□□□ 1.08
PCDH1-201ENST00000287008 NKTRP30414 1462 aaKnown RBP21.8■■□□□ 1.08
PCDH1-201ENST00000287008 ANKRD13DQ6ZTN6 518 aa21.8■■□□□ 1.08
PCDH1-201ENST00000287008 ZNF444Q8N0Y2 327 aaPredicted RBP21.8■■□□□ 1.08
PCDH1-201ENST00000287008 DACH1Q9UI36 760 aa21.8■■□□□ 1.08
PCDH1-201ENST00000287008 DDB1Q16531 1140 aa21.8■■□□□ 1.08
PCDH1-201ENST00000287008 C8orf37Q96NL8 207 aa21.8■■□□□ 1.08
PCDH1-201ENST00000287008 CTCFLQ8NI51 663 aaPredicted RBP21.79■■□□□ 1.08
PCDH1-201ENST00000287008 SMARCC1Q92922 1105 aaPredicted RBP21.79■■□□□ 1.08
PCDH1-201ENST00000287008 PIK3R4Q99570 1358 aa21.79■■□□□ 1.08
PCDH1-201ENST00000287008 DISP3Q9P2K9 1392 aa21.79■■□□□ 1.08
PCDH1-201ENST00000287008 RDXP35241 583 aaKnown RBP21.79■■□□□ 1.08
PCDH1-201ENST00000287008 SEC63Q9UGP8 760 aaKnown RBP21.79■■□□□ 1.08
PCDH1-201ENST00000287008 TRIM27P14373 513 aa21.79■■□□□ 1.08
PCDH1-201ENST00000287008 PRPF40BQ6NWY9 871 aaKnown RBP21.79■■□□□ 1.08
PCDH1-201ENST00000287008 TNMDQ9H2S6 317 aa21.79■■□□□ 1.08
PCDH1-201ENST00000287008 TSPY26PQ9H489 355 aa21.79■■□□□ 1.08
PCDH1-201ENST00000287008 ZNHIT6Q9NWK9 470 aaKnown RBP21.79■■□□□ 1.08
PCDH1-201ENST00000287008 NBPF6Q5VWK0 638 aa21.78■■□□□ 1.08
PCDH1-201ENST00000287008 NBPF5PQ86XG9 351 aaPredicted RBP21.78■■□□□ 1.08
PCDH1-201ENST00000287008 NBPF4Q96M43 638 aa21.78■■□□□ 1.08
PCDH1-201ENST00000287008 RNF41Q9H4P4 317 aaPredicted RBP21.78■■□□□ 1.08
PCDH1-201ENST00000287008 MBIPQ9NS73 344 aa21.78■■□□□ 1.08
PCDH1-201ENST00000287008 DUOX2Q9NRD8 1548 aa21.78■■□□□ 1.08
PCDH1-201ENST00000287008 CCDC192P0DO97 292 aa21.78■■□□□ 1.08
PCDH1-201ENST00000287008 UPF3BQ9BZI7 483 aaKnown RBP21.78■■□□□ 1.08
PCDH1-201ENST00000287008 DDX11Q96FC9 970 aa21.78■■□□□ 1.08
PCDH1-201ENST00000287008 SPATA32Q96LK8 384 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms