RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 CABLES1Q8TDN4 633 aa9.34□□□□□ -0.91
USP3-201ENST00000268049 ZNF592Q92610 1267 aa9.34□□□□□ -0.91
USP3-201ENST00000268049 PRKAG2Q9UGJ0 569 aa9.34□□□□□ -0.91
USP3-201ENST00000268049 IFIT1P09914 478 aaKnown RBP9.34□□□□□ -0.91
USP3-201ENST00000268049 SF3A1Q15459 793 aaKnown RBP9.34□□□□□ -0.91
USP3-201ENST00000268049 TRAPPC3LQ5T215 181 aa9.34□□□□□ -0.91
USP3-201ENST00000268049 ADGBQ8N7X0 1667 aa9.34□□□□□ -0.92
USP3-201ENST00000268049 PRAG1Q86YV5 1406 aa9.33□□□□□ -0.92
USP3-201ENST00000268049 BTBD11A6QL63 1104 aa9.33□□□□□ -0.92
USP3-201ENST00000268049 RDXP35241 583 aaKnown RBP9.33□□□□□ -0.92
USP3-201ENST00000268049 NFKBIBQ15653 356 aa9.33□□□□□ -0.92
USP3-201ENST00000268049 ORAI2Q96SN7 254 aa9.33□□□□□ -0.92
USP3-201ENST00000268049 TRPM2O94759 1503 aa9.33□□□□□ -0.92
USP3-201ENST00000268049 NOP2P46087 812 aaKnown RBP9.33□□□□□ -0.92
USP3-201ENST00000268049 MRE11P49959 708 aa9.33□□□□□ -0.92
USP3-201ENST00000268049 ARHGEF10O15013 1369 aa9.33□□□□□ -0.92
USP3-201ENST00000268049 TMEM94Q12767 1356 aa9.33□□□□□ -0.92
USP3-201ENST00000268049 UBTFL1P0CB47 393 aaPredicted RBP9.33□□□□□ -0.92
USP3-201ENST00000268049 ATP6V1AP38606 617 aa9.33□□□□□ -0.92
USP3-201ENST00000268049 FAM196AQ6ZSG2 479 aa9.33□□□□□ -0.92
USP3-201ENST00000268049 CLUAP1Q96AJ1 413 aa9.33□□□□□ -0.92
USP3-201ENST00000268049 PLEKHG1Q9ULL1 1385 aa9.33□□□□□ -0.92
USP3-201ENST00000268049 CCAR2Q8N163 923 aaKnown RBP9.33□□□□□ -0.92
USP3-201ENST00000268049 TCP11L2Q8N4U5 519 aa9.33□□□□□ -0.92
USP3-201ENST00000268049 FAM184AQ8NB25 1140 aa9.33□□□□□ -0.92
USP3-201ENST00000268049 ERVK-7P63135 1459 aa9.32□□□□□ -0.92
USP3-201ENST00000268049 HLA-DOAP06340 250 aa9.32□□□□□ -0.92
USP3-201ENST00000268049 TPM3P06753 285 aa9.32□□□□□ -0.92
USP3-201ENST00000268049 ZCRB1Q8TBF4 217 aaKnown RBP9.32□□□□□ -0.92
USP3-201ENST00000268049 ZKSCAN1P17029 563 aaPredicted RBP9.32□□□□□ -0.92
USP3-201ENST00000268049 ANKRD24Q8TF21 1146 aa9.32□□□□□ -0.92
USP3-201ENST00000268049 ARGLU1Q9NWB6 273 aaPredicted RBP9.32□□□□□ -0.92
USP3-201ENST00000268049 ADAMTS8Q9UP79 889 aa9.32□□□□□ -0.92
USP3-201ENST00000268049 BRD4O60885 1362 aaPredicted RBP9.32□□□□□ -0.92
USP3-201ENST00000268049 ZNF335Q9H4Z2 1342 aaPredicted RBP9.32□□□□□ -0.92
USP3-201ENST00000268049 IL2RBP14784 551 aa9.32□□□□□ -0.92
USP3-201ENST00000268049 DESP17661 470 aa9.32□□□□□ -0.92
USP3-201ENST00000268049 TPD52L1Q16890 204 aaPredicted RBP9.32□□□□□ -0.92
USP3-201ENST00000268049 FOXD4L1Q9NU39 408 aa9.32□□□□□ -0.92
USP3-201ENST00000268049 H0YIN7 160 aa9.32□□□□□ -0.92
USP3-201ENST00000268049 CA8P35219 290 aa9.32□□□□□ -0.92
USP3-201ENST00000268049 BRDTQ58F21 947 aaPredicted RBP9.32□□□□□ -0.92
USP3-201ENST00000268049 SPTY2D1Q68D10 685 aaPredicted RBP9.32□□□□□ -0.92
USP3-201ENST00000268049 USHBP1Q8N6Y0 703 aa9.32□□□□□ -0.92
USP3-201ENST00000268049 EMILIN1Q9Y6C2 1016 aa9.32□□□□□ -0.92
USP3-201ENST00000268049 FAM161AQ3B820 660 aa9.31□□□□□ -0.92
USP3-201ENST00000268049 EAPPQ56P03 285 aaPredicted RBP9.31□□□□□ -0.92
USP3-201ENST00000268049 ARHGAP27Q6ZUM4 889 aa9.31□□□□□ -0.92
USP3-201ENST00000268049 FMNL2Q96PY5 1086 aa9.31□□□□□ -0.92
USP3-201ENST00000268049 ZNF408Q9H9D4 720 aa9.31□□□□□ -0.92
USP3-201ENST00000268049 RAI14Q9P0K7 980 aa9.31□□□□□ -0.92
USP3-201ENST00000268049 GJA3Q9Y6H8 435 aa9.31□□□□□ -0.92
USP3-201ENST00000268049 GLI2P10070 1586 aa9.31□□□□□ -0.92
USP3-201ENST00000268049 DIP2BQ9P265 1576 aa9.31□□□□□ -0.92
USP3-201ENST00000268049 FCHSD2O94868 740 aa9.31□□□□□ -0.92
USP3-201ENST00000268049 TRAF1Q13077 416 aa9.31□□□□□ -0.92
USP3-201ENST00000268049 DZIP1Q86YF9 867 aaKnown RBP9.31□□□□□ -0.92
USP3-201ENST00000268049 CCNL1Q9UK58 526 aaPredicted RBP9.31□□□□□ -0.92
USP3-201ENST00000268049 MAPK8IP2Q13387 824 aaPredicted RBP9.31□□□□□ -0.92
USP3-201ENST00000268049 RBM17Q96I25 401 aaKnown RBP9.31□□□□□ -0.92
USP3-201ENST00000268049 GNAI3P08754 354 aa9.3□□□□□ -0.92
USP3-201ENST00000268049 CDC42BPAQ5VT25 1732 aa9.3□□□□□ -0.92
USP3-201ENST00000268049 H3BQV1 296 aa9.3□□□□□ -0.92
USP3-201ENST00000268049 PTCD1O75127 700 aaKnown RBP9.3□□□□□ -0.92
USP3-201ENST00000268049 IFFO2Q5TF58 517 aa9.3□□□□□ -0.92
USP3-201ENST00000268049 GSTO1P78417 241 aa9.3□□□□□ -0.92
USP3-201ENST00000268049 BMS1Q14692 1282 aaKnown RBP9.3□□□□□ -0.92
USP3-201ENST00000268049 PUS7Q96PZ0 661 aaKnown RBP9.3□□□□□ -0.92
USP3-201ENST00000268049 CCDC152Q4G0S7 254 aa9.3□□□□□ -0.92
USP3-201ENST00000268049 ACSBG1Q96GR2 724 aa9.3□□□□□ -0.92
USP3-201ENST00000268049 GRIN3BO60391 1043 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 TSR1Q2NL82 804 aaKnown RBP9.29□□□□□ -0.92
USP3-201ENST00000268049 ODF2Q5BJF6 829 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 HDGFL1Q5TGJ6 251 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 TPTE2Q6XPS3 522 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 HOOK1Q9UJC3 728 aaKnown RBP9.29□□□□□ -0.92
USP3-201ENST00000268049 GNAT3A8MTJ3 354 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 H0YHG0 523 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 CHMP4BP1P59074 171 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 EIF2AK4Q9P2K8 1649 aaKnown RBP9.29□□□□□ -0.92
USP3-201ENST00000268049 GCP02774 474 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 IBSPP21815 317 aaPredicted RBP9.29□□□□□ -0.92
USP3-201ENST00000268049 SIRT1Q96EB6 747 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 TRMT112Q9UI30 125 aaKnown RBP9.29□□□□□ -0.92
USP3-201ENST00000268049 BCS1LQ9Y276 419 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 NSD2O96028 1365 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 SLC5A4Q9NY91 659 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 ABCC11Q96J66 1382 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 POLR3DP05423 398 aaPredicted RBP9.29□□□□□ -0.92
USP3-201ENST00000268049 ZNF76P36508 570 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 USP5P45974 858 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 HMGN5P82970 282 aaKnown RBP9.29□□□□□ -0.92
USP3-201ENST00000268049 CEP126Q9P2H0 1117 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 AKAP2Q9Y2D5 859 aa9.29□□□□□ -0.92
USP3-201ENST00000268049 ABCC3O15438 1527 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 H7C1D1 291 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 CUL5Q93034 780 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 NLRP3Q96P20 1036 aa9.28□□□□□ -0.92
USP3-201ENST00000268049 ZBTB24O43167 697 aaPredicted RBP9.28□□□□□ -0.92
USP3-201ENST00000268049 RRP12Q5JTH9 1297 aaKnown RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms