RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 F6X3S4 739 aa12.65□□□□□ -0.38
CD44-201ENST00000263398 IMMTQ16891 758 aaKnown RBP12.65□□□□□ -0.38
CD44-201ENST00000263398 CCDC183Q5T5S1 534 aa12.65□□□□□ -0.38
CD44-201ENST00000263398 IGHDP01880 384 aa12.64□□□□□ -0.39
CD44-201ENST00000263398 IDI1Q13907 227 aa12.64□□□□□ -0.39
CD44-201ENST00000263398 UBAC1Q9BSL1 405 aa12.64□□□□□ -0.39
CD44-201ENST00000263398 LUC7LQ9NQ29 371 aaKnown RBP12.64□□□□□ -0.39
CD44-201ENST00000263398 MYO6Q9UM54 1294 aa12.64□□□□□ -0.39
CD44-201ENST00000263398 PATL2C9JE40 543 aaKnown RBP12.64□□□□□ -0.39
CD44-201ENST00000263398 LIMCH1Q9UPQ0 1083 aa12.64□□□□□ -0.39
CD44-201ENST00000263398 WASF1Q92558 559 aa12.64□□□□□ -0.39
CD44-201ENST00000263398 C14orf93Q9H972 538 aaKnown RBP12.64□□□□□ -0.39
CD44-201ENST00000263398 EIF4G3O43432 1585 aaKnown RBP12.64□□□□□ -0.39
CD44-201ENST00000263398 WASLO00401 505 aaPredicted RBP12.64□□□□□ -0.39
CD44-201ENST00000263398 TDO2P48775 406 aa12.64□□□□□ -0.39
CD44-201ENST00000263398 TBC1D9Q6ZT07 1266 aa12.64□□□□□ -0.39
CD44-201ENST00000263398 KRT18P05783 430 aaKnown RBP12.63□□□□□ -0.39
CD44-201ENST00000263398 AMOTQ4VCS5 1084 aa12.63□□□□□ -0.39
CD44-201ENST00000263398 DNAAF4Q8WXU2 420 aa12.63□□□□□ -0.39
CD44-201ENST00000263398 BOLA2Q9H3K6 86 aa12.63□□□□□ -0.39
CD44-201ENST00000263398 KIAA0556O60303 1618 aa12.63□□□□□ -0.39
CD44-201ENST00000263398 ERLIN1O75477 346 aa12.63□□□□□ -0.39
CD44-201ENST00000263398 LRRFIP2Q9Y608 721 aaKnown RBP12.63□□□□□ -0.39
CD44-201ENST00000263398 H0YHG0 523 aa12.62□□□□□ -0.39
CD44-201ENST00000263398 KIF2AO00139 706 aaPredicted RBP12.62□□□□□ -0.39
CD44-201ENST00000263398 IDH1O75874 414 aaKnown RBP12.62□□□□□ -0.39
CD44-201ENST00000263398 ZC3H6P61129 1189 aaKnown RBP12.62□□□□□ -0.39
CD44-201ENST00000263398 FLIIQ13045 1269 aa12.62□□□□□ -0.39
CD44-201ENST00000263398 LEKR1Q6ZMV7 388 aa12.62□□□□□ -0.39
CD44-201ENST00000263398 DISP1Q96F81 1524 aa12.62□□□□□ -0.39
CD44-201ENST00000263398 CD109Q6YHK3 1445 aa12.62□□□□□ -0.39
CD44-201ENST00000263398 WDR62O43379 1518 aa12.62□□□□□ -0.39
CD44-201ENST00000263398 HDAC1Q13547 482 aaPredicted RBP12.62□□□□□ -0.39
CD44-201ENST00000263398 AXDND1Q5T1B0 1012 aaPredicted RBP12.62□□□□□ -0.39
CD44-201ENST00000263398 MEX3CQ5U5Q3 659 aaKnown RBP12.62□□□□□ -0.39
CD44-201ENST00000263398 FAM177A1Q8N128 213 aaPredicted RBP12.62□□□□□ -0.39
CD44-201ENST00000263398 AKAP2Q9Y2D5 859 aa12.62□□□□□ -0.39
CD44-201ENST00000263398 FAM135AQ9P2D6 1515 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 ADGRL1O94910 1474 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 SOGA3Q5TF21 947 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 FBXO31Q5XUX0 539 aaPredicted RBP12.61□□□□□ -0.39
CD44-201ENST00000263398 TXLNBQ8N3L3 684 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 ARHGAP45Q92619 1136 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 DBF4Q9UBU7 674 aaPredicted RBP12.61□□□□□ -0.39
CD44-201ENST00000263398 HSP90AB2PQ58FF8 381 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 ZFYVE27Q5T4F4 411 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 STK11IPQ8N1F8 1099 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 POGZQ7Z3K3 1410 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 HMGB1P09429 215 aaKnown RBP12.61□□□□□ -0.39
CD44-201ENST00000263398 DEF6Q9H4E7 631 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 ANO10Q9NW15 660 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 CFAP43Q8NDM7 1665 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 CAMK4Q16566 473 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 CFAP100Q494V2 611 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 PDCL2Q8N4E4 241 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 AIDAQ96BJ3 306 aa12.61□□□□□ -0.39
CD44-201ENST00000263398 SFPQP23246 707 aaKnown RBP eCLIP12.6□□□□□ -0.39
CD44-201ENST00000263398 LRP2BPQ9P2M1 347 aa12.6□□□□□ -0.39
CD44-201ENST00000263398 NOS1P29475 1434 aa12.6□□□□□ -0.39
CD44-201ENST00000263398 TTC21BQ7Z4L5 1316 aa12.6□□□□□ -0.39
CD44-201ENST00000263398 EIF3JO75822 258 aaKnown RBP12.6□□□□□ -0.39
CD44-201ENST00000263398 ECHDC1Q9NTX5 307 aa12.6□□□□□ -0.39
CD44-201ENST00000263398 ABCA5Q8WWZ7 1642 aa12.6□□□□□ -0.39
CD44-201ENST00000263398 BAG4O95429 457 aaKnown RBP12.59□□□□□ -0.39
CD44-201ENST00000263398 RDXP35241 583 aaKnown RBP12.59□□□□□ -0.39
CD44-201ENST00000263398 UBXN4Q92575 508 aa12.59□□□□□ -0.39
CD44-201ENST00000263398 ANKRD36BQ8N2N9 1353 aa12.59□□□□□ -0.39
CD44-201ENST00000263398 IFIT1P09914 478 aaKnown RBP12.59□□□□□ -0.39
CD44-201ENST00000263398 XPCQ01831 940 aaPredicted RBP12.59□□□□□ -0.39
CD44-201ENST00000263398 METTL24Q5JXM2 366 aa12.59□□□□□ -0.39
CD44-201ENST00000263398 MBIPQ9NS73 344 aa12.59□□□□□ -0.39
CD44-201ENST00000263398 STARD3NLO95772 234 aa12.59□□□□□ -0.39
CD44-201ENST00000263398 KLHL40Q2TBA0 621 aa12.59□□□□□ -0.39
CD44-201ENST00000263398 CEP131Q9UPN4 1083 aa12.59□□□□□ -0.39
CD44-201ENST00000263398 PCDHB15Q9Y5E8 787 aa12.59□□□□□ -0.39
CD44-201ENST00000263398 MAGI3Q5TCQ9 1506 aa12.59□□□□□ -0.39
CD44-201ENST00000263398 CCDC85AQ96PX6 553 aaPredicted RBP12.59□□□□□ -0.39
CD44-201ENST00000263398 CCDC8Q9H0W5 538 aaPredicted RBP12.59□□□□□ -0.39
CD44-201ENST00000263398 RAI14Q9P0K7 980 aa12.59□□□□□ -0.39
CD44-201ENST00000263398 CTAGE5O15320 804 aa12.58□□□□□ -0.4
CD44-201ENST00000263398 PTPN14Q15678 1187 aa12.58□□□□□ -0.4
CD44-201ENST00000263398 TTC22Q5TAA0 569 aa12.58□□□□□ -0.4
CD44-201ENST00000263398 HYPKQ9NX55 129 aa12.58□□□□□ -0.4
CD44-201ENST00000263398 SYCP1Q15431 976 aa12.58□□□□□ -0.4
CD44-201ENST00000263398 CCDC181Q5TID7 509 aa12.58□□□□□ -0.4
CD44-201ENST00000263398 BMP2KQ9NSY1 1161 aaPredicted RBP12.58□□□□□ -0.4
CD44-201ENST00000263398 DDX19AQ9NUU7 478 aaKnown RBP12.58□□□□□ -0.4
CD44-201ENST00000263398 RALGAPBQ86X10 1494 aa12.58□□□□□ -0.4
CD44-201ENST00000263398 IGHMBP2P38935 993 aaKnown RBP12.58□□□□□ -0.4
CD44-201ENST00000263398 NUCB1Q02818 461 aa12.58□□□□□ -0.4
CD44-201ENST00000263398 EVI5LQ96CN4 794 aa12.58□□□□□ -0.4
CD44-201ENST00000263398 C8orf76Q96K31 380 aa12.58□□□□□ -0.4
CD44-201ENST00000263398 MYD88Q99836 296 aa12.58□□□□□ -0.4
CD44-201ENST00000263398 FANCAO15360 1455 aa12.58□□□□□ -0.4
CD44-201ENST00000263398 ARHGAP29Q52LW3 1261 aa12.57□□□□□ -0.4
CD44-201ENST00000263398 USP25Q9UHP3 1055 aa12.57□□□□□ -0.4
CD44-201ENST00000263398 SYCP2Q9BX26 1530 aa12.57□□□□□ -0.4
CD44-201ENST00000263398 CCDC196A0A1B0GTZ2 297 aa12.57□□□□□ -0.4
CD44-201ENST00000263398 EPB41L2O43491 1005 aaKnown RBP12.57□□□□□ -0.4
CD44-201ENST00000263398 ATP2B2Q01814 1243 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms