RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 AKAP4Q5JQC9 854 aa16.18■□□□□ 0.18
SPTLC1-201ENST00000262554 KDM3BQ7LBC6 1761 aa16.17■□□□□ 0.18
SPTLC1-201ENST00000262554 RGPD5Q99666 1765 aa16.17■□□□□ 0.18
SPTLC1-201ENST00000262554 ATP10DQ9P241 1426 aa16.17■□□□□ 0.18
SPTLC1-201ENST00000262554 ZNF530Q6P9A1 599 aaPredicted RBP16.17■□□□□ 0.18
SPTLC1-201ENST00000262554 DCTPP1Q9H773 170 aa16.17■□□□□ 0.18
SPTLC1-201ENST00000262554 BECN1Q14457 450 aa16.16■□□□□ 0.18
SPTLC1-201ENST00000262554 BMP2KLQ5H9B9 411 aa16.16■□□□□ 0.18
SPTLC1-201ENST00000262554 SLC4A10Q6U841 1118 aa16.16■□□□□ 0.18
SPTLC1-201ENST00000262554 FLIIQ13045 1269 aa16.16■□□□□ 0.18
SPTLC1-201ENST00000262554 CEP85Q6P2H3 762 aa16.16■□□□□ 0.18
SPTLC1-201ENST00000262554 MEIS3Q99687 375 aa16.16■□□□□ 0.18
SPTLC1-201ENST00000262554 N4BP2Q86UW6 1770 aaPredicted RBP16.15■□□□□ 0.18
SPTLC1-201ENST00000262554 F6X3S4 739 aa16.15■□□□□ 0.18
SPTLC1-201ENST00000262554 FKBP5Q13451 457 aaPredicted RBP16.15■□□□□ 0.18
SPTLC1-201ENST00000262554 RTL5Q5HYW3 569 aaPredicted RBP16.15■□□□□ 0.18
SPTLC1-201ENST00000262554 C1orf141Q5JVX7 400 aa16.15■□□□□ 0.18
SPTLC1-201ENST00000262554 CADPS2Q86UW7 1296 aa16.15■□□□□ 0.18
SPTLC1-201ENST00000262554 CHMP4AQ9BY43 222 aa16.15■□□□□ 0.18
SPTLC1-201ENST00000262554 TEFQ10587 303 aa16.14■□□□□ 0.17
SPTLC1-201ENST00000262554 NECTIN2Q92692 538 aa16.14■□□□□ 0.17
SPTLC1-201ENST00000262554 LGR6Q9HBX8 967 aa16.14■□□□□ 0.17
SPTLC1-201ENST00000262554 MFAP1P55081 439 aaKnown RBP16.14■□□□□ 0.17
SPTLC1-201ENST00000262554 HDGFL1Q5TGJ6 251 aa16.14■□□□□ 0.17
SPTLC1-201ENST00000262554 AXIN2Q9Y2T1 843 aa16.14■□□□□ 0.17
SPTLC1-201ENST00000262554 OVOS2A0A0G2JMS6 1433 aa16.14■□□□□ 0.17
SPTLC1-201ENST00000262554 HMMRO75330 724 aa16.13■□□□□ 0.17
SPTLC1-201ENST00000262554 HOXB7P09629 217 aa16.13■□□□□ 0.17
SPTLC1-201ENST00000262554 NPHP3Q7Z494 1330 aa16.13■□□□□ 0.17
SPTLC1-201ENST00000262554 PXDNLA1KZ92 1463 aa16.12■□□□□ 0.17
SPTLC1-201ENST00000262554 C22orf23Q9BZE7 217 aa16.12■□□□□ 0.17
SPTLC1-201ENST00000262554 EIF4A1P60842 406 aaKnown RBP16.12■□□□□ 0.17
SPTLC1-201ENST00000262554 ZC3H6P61129 1189 aaKnown RBP16.12■□□□□ 0.17
SPTLC1-201ENST00000262554 PXDNQ92626 1479 aa16.11■□□□□ 0.17
SPTLC1-201ENST00000262554 ERBB3P21860 1342 aa16.11■□□□□ 0.17
SPTLC1-201ENST00000262554 BTBD11A6QL63 1104 aa16.11■□□□□ 0.17
SPTLC1-201ENST00000262554 RNMTO43148 476 aaKnown RBP16.11■□□□□ 0.17
SPTLC1-201ENST00000262554 GNAI3P08754 354 aa16.11■□□□□ 0.17
SPTLC1-201ENST00000262554 HSPA2P54652 639 aa16.11■□□□□ 0.17
SPTLC1-201ENST00000262554 MPRIPQ6WCQ1 1025 aa16.11■□□□□ 0.17
SPTLC1-201ENST00000262554 GNAI2P04899 355 aa16.1■□□□□ 0.17
SPTLC1-201ENST00000262554 USP35Q9P2H5 1018 aa16.1■□□□□ 0.17
SPTLC1-201ENST00000262554 TNS3Q68CZ2 1445 aa16.1■□□□□ 0.17
SPTLC1-201ENST00000262554 LMTK3Q96Q04 1460 aa16.09■□□□□ 0.17
SPTLC1-201ENST00000262554 XIRP1Q702N8 1843 aaKnown RBP16.09■□□□□ 0.17
SPTLC1-201ENST00000262554 DDX17Q92841 729 aaKnown RBP16.09■□□□□ 0.17
SPTLC1-201ENST00000262554 PLEKHM2Q8IWE5 1019 aa16.08■□□□□ 0.17
SPTLC1-201ENST00000262554 SIPA1L3O60292 1781 aaPredicted RBP16.08■□□□□ 0.16
SPTLC1-201ENST00000262554 COL18A1P39060 1754 aa16.08■□□□□ 0.16
SPTLC1-201ENST00000262554 CRYBG1Q9Y4K1 1723 aa16.08■□□□□ 0.16
SPTLC1-201ENST00000262554 ABCC6O95255 1503 aa16.08■□□□□ 0.16
SPTLC1-201ENST00000262554 EIF2S2P20042 333 aaKnown RBP16.08■□□□□ 0.16
SPTLC1-201ENST00000262554 ADAMTS7Q9UKP4 1686 aa16.07■□□□□ 0.16
SPTLC1-201ENST00000262554 RAPGEF4Q8WZA2 1011 aa16.07■□□□□ 0.16
SPTLC1-201ENST00000262554 KCNQ3O43525 872 aa16.06■□□□□ 0.16
SPTLC1-201ENST00000262554 EIF5BO60841 1220 aaKnown RBP16.06■□□□□ 0.16
SPTLC1-201ENST00000262554 PHAXQ9H814 394 aaKnown RBP16.06■□□□□ 0.16
SPTLC1-201ENST00000262554 NLRP2Q9NX02 1062 aa16.06■□□□□ 0.16
SPTLC1-201ENST00000262554 SPATA31A3Q5VYP0 1347 aa16.05■□□□□ 0.16
SPTLC1-201ENST00000262554 CDC45O75419 566 aa16.05■□□□□ 0.16
SPTLC1-201ENST00000262554 TTC22Q5TAA0 569 aa16.05■□□□□ 0.16
SPTLC1-201ENST00000262554 CHPF2Q9P2E5 772 aa16.05■□□□□ 0.16
SPTLC1-201ENST00000262554 STRCQ7RTU9 1775 aa16.05■□□□□ 0.16
SPTLC1-201ENST00000262554 APBB1O00213 710 aa16.04■□□□□ 0.16
SPTLC1-201ENST00000262554 TATP17735 454 aaPredicted RBP16.04■□□□□ 0.16
SPTLC1-201ENST00000262554 RBM25P49756 843 aaKnown RBP16.04■□□□□ 0.16
SPTLC1-201ENST00000262554 TBC1D9Q6ZT07 1266 aa16.04■□□□□ 0.16
SPTLC1-201ENST00000262554 SCN11AQ9UI33 1791 aa16.04■□□□□ 0.16
SPTLC1-201ENST00000262554 CSB-PGBD3P0DP91 1061 aa16.03■□□□□ 0.16
SPTLC1-201ENST00000262554 ATP8B2P98198 1209 aa16.03■□□□□ 0.16
SPTLC1-201ENST00000262554 POTEDQ86YR6 584 aa16.03■□□□□ 0.16
SPTLC1-201ENST00000262554 C16orf71Q8IYS4 520 aaPredicted RBP16.03■□□□□ 0.16
SPTLC1-201ENST00000262554 TBC1D2Q9BYX2 928 aa16.03■□□□□ 0.16
SPTLC1-201ENST00000262554 BCL11AQ9H165 835 aa16.03■□□□□ 0.16
SPTLC1-201ENST00000262554 PLEKHG2Q9H7P9 1386 aa16.03■□□□□ 0.16
SPTLC1-201ENST00000262554 UBTFL1P0CB47 393 aaPredicted RBP16.03■□□□□ 0.16
SPTLC1-201ENST00000262554 GSPT1P15170 499 aaKnown RBP16.03■□□□□ 0.16
SPTLC1-201ENST00000262554 CABLES1Q8TDN4 633 aa16.03■□□□□ 0.16
SPTLC1-201ENST00000262554 SRCIN1Q9C0H9 1055 aa16.03■□□□□ 0.16
SPTLC1-201ENST00000262554 DBF4Q9UBU7 674 aaPredicted RBP16.03■□□□□ 0.16
SPTLC1-201ENST00000262554 SPG7Q9UQ90 795 aa16.03■□□□□ 0.16
SPTLC1-201ENST00000262554 SMARCA5O60264 1052 aaPredicted RBP16.02■□□□□ 0.16
SPTLC1-201ENST00000262554 USP44Q9H0E7 712 aa16.02■□□□□ 0.16
SPTLC1-201ENST00000262554 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.02■□□□□ 0.162e-8■■□□□ 14.3
SPTLC1-201ENST00000262554 CPDO75976 1380 aa16.02■□□□□ 0.15
SPTLC1-201ENST00000262554 HEG1Q9ULI3 1381 aa16.02■□□□□ 0.15
SPTLC1-201ENST00000262554 GIGYF1O75420 1035 aaPredicted RBP16.01■□□□□ 0.15
SPTLC1-201ENST00000262554 LRRFIP2Q9Y608 721 aaKnown RBP16.01■□□□□ 0.15
SPTLC1-201ENST00000262554 NFKBIBQ15653 356 aa16.01■□□□□ 0.15
SPTLC1-201ENST00000262554 DNAAF4Q8WXU2 420 aa16.01■□□□□ 0.15
SPTLC1-201ENST00000262554 CHRNA2Q15822 529 aa16■□□□□ 0.15
SPTLC1-201ENST00000262554 BRINP3Q76B58 766 aa16■□□□□ 0.15
SPTLC1-201ENST00000262554 OTUD7AQ8TE49 926 aaPredicted RBP16■□□□□ 0.15
SPTLC1-201ENST00000262554 EXOC6BQ9Y2D4 811 aa15.99■□□□□ 0.15
SPTLC1-201ENST00000262554 MEGF6O75095 1541 aa15.99■□□□□ 0.15
SPTLC1-201ENST00000262554 PKD1L3Q7Z443 1732 aa15.99■□□□□ 0.15
SPTLC1-201ENST00000262554 PNMA6EA0A0J9YXQ4 647 aa15.99■□□□□ 0.15
SPTLC1-201ENST00000262554 PI4KAP2A4QPH2 592 aa15.99■□□□□ 0.15
SPTLC1-201ENST00000262554 PHKG2P15735 406 aa15.99■□□□□ 0.15
SPTLC1-201ENST00000262554 CASC1Q6TDU7 716 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms