RNA–Protein interactions for RNA: ENST00000248139.7

RAB40C-201, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB40C, Length 2,699 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-201ENST00000248139 LRRFIP2Q9Y608 721 aaKnown RBP31.43■■■□□ 2.62
RAB40C-201ENST00000248139 MRE11P49959 708 aa31.43■■■□□ 2.62
RAB40C-201ENST00000248139 CCDC30Q5VVM6 783 aa31.43■■■□□ 2.62
RAB40C-201ENST00000248139 PHAXQ9H814 394 aaKnown RBP31.43■■■□□ 2.62
RAB40C-201ENST00000248139 BAG4O95429 457 aaKnown RBP31.42■■■□□ 2.62
RAB40C-201ENST00000248139 ERC2O15083 957 aa31.41■■■□□ 2.62
RAB40C-201ENST00000248139 SETD1BQ9UPS6 1966 aaKnown RBP31.4■■■□□ 2.62
RAB40C-201ENST00000248139 RILPL2Q969X0 211 aa31.4■■■□□ 2.62
RAB40C-201ENST00000248139 EIF2S2P20042 333 aaKnown RBP31.4■■■□□ 2.62
RAB40C-201ENST00000248139 MCTP1Q6DN14 999 aa31.4■■■□□ 2.62
RAB40C-201ENST00000248139 THEMISQ8N1K5 641 aaPredicted RBP31.4■■■□□ 2.62
RAB40C-201ENST00000248139 LRRCC1Q9C099 1032 aa31.39■■■□□ 2.61
RAB40C-201ENST00000248139 IL1RAPL2Q9NP60 686 aa31.39■■■□□ 2.61
RAB40C-201ENST00000248139 FOXD4L5Q5VV16 416 aaPredicted RBP31.38■■■□□ 2.61
RAB40C-201ENST00000248139 FOXD4L4Q8WXT5 416 aaPredicted RBP31.38■■■□□ 2.61
RAB40C-201ENST00000248139 TRIM6-TRIM34B2RNG4 842 aa31.38■■■□□ 2.61
RAB40C-201ENST00000248139 REC8O95072 547 aa31.37■■■□□ 2.61
RAB40C-201ENST00000248139 TAF7Q15545 349 aaPredicted RBP31.37■■■□□ 2.61
RAB40C-201ENST00000248139 NOL8Q76FK4 1167 aaKnown RBP31.37■■■□□ 2.61
RAB40C-201ENST00000248139 UNC5CLQ8IV45 518 aa31.36■■■□□ 2.61
RAB40C-201ENST00000248139 DDX49Q9Y6V7 483 aaKnown RBP31.36■■■□□ 2.61
RAB40C-201ENST00000248139 USP44Q9H0E7 712 aa31.35■■■□□ 2.61
RAB40C-201ENST00000248139 ATP8B2P98198 1209 aa31.35■■■□□ 2.61
RAB40C-201ENST00000248139 OSBPL3Q9H4L5 887 aa31.35■■■□□ 2.61
RAB40C-201ENST00000248139 MAP3K5Q99683 1374 aa31.34■■■□□ 2.61
RAB40C-201ENST00000248139 NCLP19338 710 aaKnown RBP31.34■■■□□ 2.61
RAB40C-201ENST00000248139 MX1P20591 662 aa31.34■■■□□ 2.61
RAB40C-201ENST00000248139 HDGFL1Q5TGJ6 251 aa31.34■■■□□ 2.61
RAB40C-201ENST00000248139 LGR6Q9HBX8 967 aa31.34■■■□□ 2.61
RAB40C-201ENST00000248139 ST18O60284 1047 aa31.34■■■□□ 2.61
RAB40C-201ENST00000248139 ANXA1P04083 346 aa31.34■■■□□ 2.61
RAB40C-201ENST00000248139 GNAI3P08754 354 aa31.34■■■□□ 2.61
RAB40C-201ENST00000248139 EIF5BO60841 1220 aaKnown RBP31.33■■■□□ 2.61
RAB40C-201ENST00000248139 PALD1Q9ULE6 856 aa31.33■■■□□ 2.61
RAB40C-201ENST00000248139 MAP4K4O95819 1239 aaPredicted RBP31.33■■■□□ 2.61
RAB40C-201ENST00000248139 NEK4P51957 841 aa31.33■■■□□ 2.61
RAB40C-201ENST00000248139 ARHGAP23Q9P227 1491 aa31.33■■■□□ 2.61
RAB40C-201ENST00000248139 KCNQ3O43525 872 aa31.32■■■□□ 2.61
RAB40C-201ENST00000248139 SALL3Q9BXA9 1300 aa31.32■■■□□ 2.6
RAB40C-201ENST00000248139 SKOR2Q2VWA4 1001 aaPredicted RBP31.32■■■□□ 2.6
RAB40C-201ENST00000248139 HTATSF1O43719 755 aaKnown RBP31.32■■■□□ 2.6
RAB40C-201ENST00000248139 NUTM1Q86Y26 1132 aa31.32■■■□□ 2.6
RAB40C-201ENST00000248139 SLIT1O75093 1534 aa31.31■■■□□ 2.6
RAB40C-201ENST00000248139 GOLGA6L22H0YM25 854 aa31.31■■■□□ 2.6
RAB40C-201ENST00000248139 NWD1Q149M9 1564 aa31.3■■■□□ 2.6
RAB40C-201ENST00000248139 NBPF6Q5VWK0 638 aa31.3■■■□□ 2.6
RAB40C-201ENST00000248139 NBPF4Q96M43 638 aa31.3■■■□□ 2.6
RAB40C-201ENST00000248139 ESYT1Q9BSJ8 1104 aa31.3■■■□□ 2.6
RAB40C-201ENST00000248139 ANO2Q9NQ90 1003 aa31.3■■■□□ 2.6
RAB40C-201ENST00000248139 UBTFL1P0CB47 393 aaPredicted RBP31.29■■■□□ 2.6
RAB40C-201ENST00000248139 IL25Q9H293 177 aa31.29■■■□□ 2.6
RAB40C-201ENST00000248139 ZDHHC9Q9Y397 364 aa31.29■■■□□ 2.6
RAB40C-201ENST00000248139 LRRC59Q96AG4 307 aaKnown RBP31.28■■■□□ 2.6
RAB40C-201ENST00000248139 IBTKQ9P2D0 1353 aaPredicted RBP31.27■■■□□ 2.6
RAB40C-201ENST00000248139 CYP2E1P05181 493 aaPredicted RBP31.27■■■□□ 2.6
RAB40C-201ENST00000248139 NUCB2P80303 420 aa31.26■■■□□ 2.6
RAB40C-201ENST00000248139 XPCQ01831 940 aaPredicted RBP31.26■■■□□ 2.6
RAB40C-201ENST00000248139 CHMLP26374 656 aa31.26■■■□□ 2.59
RAB40C-201ENST00000248139 PHF8Q9UPP1 1060 aa31.26■■■□□ 2.59
RAB40C-201ENST00000248139 CAVIN1Q6NZI2 390 aaKnown RBP31.25■■■□□ 2.59
RAB40C-201ENST00000248139 PPP1R42Q7Z4L9 355 aa31.25■■■□□ 2.59
RAB40C-201ENST00000248139 NBPF7P0C2Y1 421 aaPredicted RBP31.24■■■□□ 2.59
RAB40C-201ENST00000248139 CLEC17AQ6ZS10 378 aa31.24■■■□□ 2.59
RAB40C-201ENST00000248139 CHPF2Q9P2E5 772 aa31.24■■■□□ 2.59
RAB40C-201ENST00000248139 SURF6O75683 361 aaKnown RBP31.24■■■□□ 2.59
RAB40C-201ENST00000248139 UPF3BQ9BZI7 483 aaKnown RBP31.24■■■□□ 2.59
RAB40C-201ENST00000248139 FAM208AQ9UK61 1670 aaKnown RBP31.23■■■□□ 2.59
RAB40C-201ENST00000248139 PRPF40AO75400 957 aaKnown RBP31.23■■■□□ 2.59
RAB40C-201ENST00000248139 LMBRD1Q9NUN5 540 aa31.23■■■□□ 2.59
RAB40C-201ENST00000248139 KLHL40Q2TBA0 621 aa31.23■■■□□ 2.59
RAB40C-201ENST00000248139 TMX3Q96JJ7 454 aa31.23■■■□□ 2.59
RAB40C-201ENST00000248139 XRN1Q8IZH2 1706 aaKnown RBP31.23■■■□□ 2.59
RAB40C-201ENST00000248139 MARF1Q9Y4F3 1742 aaKnown RBP31.22■■■□□ 2.59
RAB40C-201ENST00000248139 ERBB4Q15303 1308 aa31.22■■■□□ 2.59
RAB40C-201ENST00000248139 MPRIPQ6WCQ1 1025 aa31.22■■■□□ 2.59
RAB40C-201ENST00000248139 ESCO1Q5FWF5 840 aa31.21■■■□□ 2.59
RAB40C-201ENST00000248139 RBM27Q9P2N5 1060 aaKnown RBP31.21■■■□□ 2.59
RAB40C-201ENST00000248139 LRRC37A3O60309 1634 aa31.2■■■□□ 2.59
RAB40C-201ENST00000248139 PI4KAP2A4QPH2 592 aa31.2■■■□□ 2.59
RAB40C-201ENST00000248139 PI4KAP1Q8N8J0 262 aa31.2■■■□□ 2.59
RAB40C-201ENST00000248139 SRGAP3O43295 1099 aa31.19■■■□□ 2.58
RAB40C-201ENST00000248139 FOXD4L6Q3SYB3 417 aaPredicted RBP31.19■■■□□ 2.58
RAB40C-201ENST00000248139 FOXD4L3Q6VB84 417 aaPredicted RBP31.19■■■□□ 2.58
RAB40C-201ENST00000248139 SRCIN1Q9C0H9 1055 aa31.19■■■□□ 2.58
RAB40C-201ENST00000248139 PTMSP20962 102 aa31.19■■■□□ 2.58
RAB40C-201ENST00000248139 EIF4A1P60842 406 aaKnown RBP31.19■■■□□ 2.58
RAB40C-201ENST00000248139 PSME1Q06323 249 aa31.18■■■□□ 2.58
RAB40C-201ENST00000248139 IP6K1Q92551 441 aa31.18■■■□□ 2.58
RAB40C-201ENST00000248139 CWC22Q9HCG8 908 aaKnown RBP31.18■■■□□ 2.58
RAB40C-201ENST00000248139 LMOD2Q6P5Q4 547 aa31.17■■■□□ 2.58
RAB40C-201ENST00000248139 ANKARQ7Z5J8 1434 aa31.17■■■□□ 2.58
RAB40C-201ENST00000248139 SSH3Q8TE77 659 aa31.17■■■□□ 2.58
RAB40C-201ENST00000248139 SOS1Q07889 1333 aaPredicted RBP31.17■■■□□ 2.58
RAB40C-201ENST00000248139 STAP2Q9UGK3 403 aa31.16■■■□□ 2.58
RAB40C-201ENST00000248139 ISY1Q9ULR0 285 aaKnown RBP31.16■■■□□ 2.58
RAB40C-201ENST00000248139 NSFL1CQ9UNZ2 370 aaKnown RBP31.16■■■□□ 2.58
RAB40C-201ENST00000248139 GPT2Q8TD30 523 aa31.15■■■□□ 2.58
RAB40C-201ENST00000248139 FER1L4A9Z1Z3 1794 aa31.14■■■□□ 2.58
RAB40C-201ENST00000248139 ZNF530Q6P9A1 599 aaPredicted RBP31.14■■■□□ 2.58
RAB40C-201ENST00000248139 RHPN1Q8TCX5 695 aa31.13■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms