RNA–Protein interactions for RNA: ENST00000245479.2

SOX9-201, Transcript of SRY-box 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SOX9, Length 3,935 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9-201ENST00000245479 PPP1R42Q7Z4L9 355 aa13.85□□□□□ -0.19
SOX9-201ENST00000245479 ATP6V1DQ9Y5K8 247 aa13.85□□□□□ -0.19
SOX9-201ENST00000245479 SETD1BQ9UPS6 1966 aaKnown RBP13.85□□□□□ -0.19
SOX9-201ENST00000245479 TTC22Q5TAA0 569 aa13.85□□□□□ -0.19
SOX9-201ENST00000245479 PRAMEF22A3QJZ6 481 aa13.84□□□□□ -0.19
SOX9-201ENST00000245479 ERC2O15083 957 aa13.84□□□□□ -0.19
SOX9-201ENST00000245479 STK11IPQ8N1F8 1099 aa13.84□□□□□ -0.19
SOX9-201ENST00000245479 ORAI2Q96SN7 254 aa13.84□□□□□ -0.19
SOX9-201ENST00000245479 SRCIN1Q9C0H9 1055 aa13.84□□□□□ -0.19
SOX9-201ENST00000245479 MADDQ8WXG6 1647 aa13.84□□□□□ -0.19
SOX9-201ENST00000245479 ATP5J2-PTCD1G3V325 749 aa13.84□□□□□ -0.19
SOX9-201ENST00000245479 DNAJC2Q99543 621 aaKnown RBP13.84□□□□□ -0.19
SOX9-201ENST00000245479 KDM5AP29375 1690 aaKnown RBP13.84□□□□□ -0.19
SOX9-201ENST00000245479 FSD2A1L4K1 749 aa13.84□□□□□ -0.19
SOX9-201ENST00000245479 SPDYE4A6NLX3 237 aa13.84□□□□□ -0.19
SOX9-201ENST00000245479 HSP90B1P14625 803 aaKnown RBP13.84□□□□□ -0.19
SOX9-201ENST00000245479 MX1P20591 662 aa13.84□□□□□ -0.19
SOX9-201ENST00000245479 ZSCAN23Q3MJ62 389 aa13.84□□□□□ -0.19
SOX9-201ENST00000245479 PPP4R3BQ5MIZ7 849 aa13.84□□□□□ -0.19
SOX9-201ENST00000245479 PROSER2Q86WR7 435 aaPredicted RBP13.84□□□□□ -0.19
SOX9-201ENST00000245479 BOLA2Q9H3K6 86 aa13.84□□□□□ -0.19
SOX9-201ENST00000245479 STRN4Q9NRL3 753 aa13.84□□□□□ -0.19
SOX9-201ENST00000245479 CCDC66A2RUB6 948 aa13.83□□□□□ -0.2
SOX9-201ENST00000245479 CGNQ9P2M7 1197 aaKnown RBP13.83□□□□□ -0.2
SOX9-201ENST00000245479 ZKSCAN5Q9Y2L8 839 aa13.83□□□□□ -0.2
SOX9-201ENST00000245479 BBXQ8WY36 941 aaPredicted RBP13.83□□□□□ -0.2
SOX9-201ENST00000245479 CHMP4CQ96CF2 233 aa13.83□□□□□ -0.2
SOX9-201ENST00000245479 NBPF7P0C2Y1 421 aaPredicted RBP13.82□□□□□ -0.2
SOX9-201ENST00000245479 PDE1AP54750 535 aa13.82□□□□□ -0.2
SOX9-201ENST00000245479 RPAP2Q8IXW5 612 aaPredicted RBP13.82□□□□□ -0.2
SOX9-201ENST00000245479 HTATSF1O43719 755 aaKnown RBP13.82□□□□□ -0.2
SOX9-201ENST00000245479 UNC5CLQ8IV45 518 aa13.82□□□□□ -0.2
SOX9-201ENST00000245479 GAS2L3Q86XJ1 694 aa13.82□□□□□ -0.2
SOX9-201ENST00000245479 THEMISQ8N1K5 641 aaPredicted RBP13.82□□□□□ -0.2
SOX9-201ENST00000245479 ANKRD44Q8N8A2 993 aa13.82□□□□□ -0.2
SOX9-201ENST00000245479 TSPOAP1O95153 1857 aa13.81□□□□□ -0.2
SOX9-201ENST00000245479 GOLGA6L19H0YKK7 550 aa13.81□□□□□ -0.2
SOX9-201ENST00000245479 GNAI3P08754 354 aa13.81□□□□□ -0.2
SOX9-201ENST00000245479 MCM5P33992 734 aa13.81□□□□□ -0.2
SOX9-201ENST00000245479 RAB3GAP1Q15042 981 aa13.81□□□□□ -0.2
SOX9-201ENST00000245479 DCTPP1Q9H773 170 aa13.81□□□□□ -0.2
SOX9-201ENST00000245479 AACSQ86V21 672 aa13.81□□□□□ -0.2
SOX9-201ENST00000245479 PHF23Q9BUL5 403 aaPredicted RBP13.81□□□□□ -0.2
SOX9-201ENST00000245479 PHF8Q9UPP1 1060 aa13.81□□□□□ -0.2
SOX9-201ENST00000245479 UNC13BO14795 1591 aa13.81□□□□□ -0.2
SOX9-201ENST00000245479 PRIM1P49642 420 aaKnown RBP13.81□□□□□ -0.2
SOX9-201ENST00000245479 NSD2O96028 1365 aa13.8□□□□□ -0.2
SOX9-201ENST00000245479 RAPGEF4Q8WZA2 1011 aa13.8□□□□□ -0.2
SOX9-201ENST00000245479 ABCA6Q8N139 1617 aa13.8□□□□□ -0.2
SOX9-201ENST00000245479 ANTXR1Q9H6X2 564 aa13.8□□□□□ -0.2
SOX9-201ENST00000245479 USP25Q9UHP3 1055 aa13.8□□□□□ -0.2
SOX9-201ENST00000245479 PALD1Q9ULE6 856 aa13.8□□□□□ -0.2
SOX9-201ENST00000245479 IL16Q14005 1332 aa13.8□□□□□ -0.2
SOX9-201ENST00000245479 NPHP1O15259 732 aa13.8□□□□□ -0.2
SOX9-201ENST00000245479 IGSF3O75054 1194 aa13.8□□□□□ -0.2
SOX9-201ENST00000245479 CCT4P50991 539 aaKnown RBP13.8□□□□□ -0.2
SOX9-201ENST00000245479 G3BP1Q13283 466 aaKnown RBP eCLIP13.8□□□□□ -0.24e-6■□□□□ 9.6
SOX9-201ENST00000245479 SMAP1Q8IYB5 467 aaPredicted RBP13.8□□□□□ -0.2
SOX9-201ENST00000245479 NECAB1Q8N987 351 aa13.79□□□□□ -0.2
SOX9-201ENST00000245479 IL17REQ8NFR9 667 aa13.79□□□□□ -0.2
SOX9-201ENST00000245479 ROBO2Q9HCK4 1378 aa13.79□□□□□ -0.2
SOX9-201ENST00000245479 BECN2A8MW95 431 aa13.79□□□□□ -0.2
SOX9-201ENST00000245479 PRPF40BQ6NWY9 871 aaKnown RBP13.79□□□□□ -0.2
SOX9-201ENST00000245479 CLASRPQ8N2M8 674 aaKnown RBP13.79□□□□□ -0.2
SOX9-201ENST00000245479 GORABQ5T7V8 394 aa13.79□□□□□ -0.2
SOX9-201ENST00000245479 NBPF6Q5VWK0 638 aa13.79□□□□□ -0.2
SOX9-201ENST00000245479 NBPF4Q96M43 638 aa13.79□□□□□ -0.2
SOX9-201ENST00000245479 ZNF830Q96NB3 372 aaPredicted RBP13.79□□□□□ -0.2
SOX9-201ENST00000245479 FSD1Q9BTV5 496 aa13.79□□□□□ -0.2
SOX9-201ENST00000245479 LRRC2Q9BYS8 371 aa13.79□□□□□ -0.2
SOX9-201ENST00000245479 TNRQ92752 1358 aa13.78□□□□□ -0.2
SOX9-201ENST00000245479 CHL1O00533 1208 aa13.78□□□□□ -0.2
SOX9-201ENST00000245479 TPD52L1Q16890 204 aaPredicted RBP13.78□□□□□ -0.2
SOX9-201ENST00000245479 CCDC83Q8IWF9 413 aa13.78□□□□□ -0.2
SOX9-201ENST00000245479 EDC3Q96F86 508 aaKnown RBP13.78□□□□□ -0.2
SOX9-201ENST00000245479 MAP3K2Q9Y2U5 619 aa13.78□□□□□ -0.2
SOX9-201ENST00000245479 RAB11FIP4Q86YS3 637 aa13.78□□□□□ -0.2
SOX9-201ENST00000245479 SMC3Q9UQE7 1217 aa13.78□□□□□ -0.2
SOX9-201ENST00000245479 UHRF1BP1LA0JNW5 1464 aa13.78□□□□□ -0.2
SOX9-201ENST00000245479 TTC5Q8N0Z6 440 aa13.78□□□□□ -0.2
SOX9-201ENST00000245479 SNX21Q969T3 373 aa13.78□□□□□ -0.2
SOX9-201ENST00000245479 CASTP20810 708 aaKnown RBP13.77□□□□□ -0.2
SOX9-201ENST00000245479 FAM173BQ6P4H8 233 aa13.77□□□□□ -0.2
SOX9-201ENST00000245479 JAKMIP1Q96N16 626 aaKnown RBP13.77□□□□□ -0.2
SOX9-201ENST00000245479 CCDC94Q9BW85 323 aaPredicted RBP13.77□□□□□ -0.2
SOX9-201ENST00000245479 TRIM5Q9C035 493 aa13.77□□□□□ -0.2
SOX9-201ENST00000245479 MAP3K4Q9Y6R4 1608 aa13.77□□□□□ -0.2
SOX9-201ENST00000245479 TPM3P06753 285 aa13.77□□□□□ -0.21
SOX9-201ENST00000245479 PDE4CQ08493 712 aa13.77□□□□□ -0.21
SOX9-201ENST00000245479 DDX11Q96FC9 970 aa13.77□□□□□ -0.21
SOX9-201ENST00000245479 ERICH4A6NGS2 130 aa13.77□□□□□ -0.21
SOX9-201ENST00000245479 TMX3Q96JJ7 454 aa13.77□□□□□ -0.21
SOX9-201ENST00000245479 USP26Q9BXU7 913 aa13.77□□□□□ -0.21
SOX9-201ENST00000245479 CEP152O94986 1710 aa13.76□□□□□ -0.21
SOX9-201ENST00000245479 HS1BP3Q53T59 392 aa13.76□□□□□ -0.21
SOX9-201ENST00000245479 NOL7Q9UMY1 257 aaKnown RBP13.76□□□□□ -0.21
SOX9-201ENST00000245479 RNF17Q9BXT8 1623 aaKnown RBP13.76□□□□□ -0.21
SOX9-201ENST00000245479 CAMK4Q16566 473 aa13.76□□□□□ -0.21
SOX9-201ENST00000245479 FAM184AQ8NB25 1140 aa13.76□□□□□ -0.21
SOX9-201ENST00000245479 ERBB4Q15303 1308 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms