RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 CABP4P57796 275 aa11.19□□□□□ -0.62
VPS4B-201ENST00000238497 DCAF8L1A6NGE4 600 aa11.19□□□□□ -0.62
VPS4B-201ENST00000238497 PHF14O94880 888 aa11.19□□□□□ -0.62
VPS4B-201ENST00000238497 SLC27A3Q5K4L6 730 aa11.19□□□□□ -0.62
VPS4B-201ENST00000238497 BCL9O00512 1426 aa11.18□□□□□ -0.62
VPS4B-201ENST00000238497 IGSF1Q8N6C5 1336 aa11.18□□□□□ -0.62
VPS4B-201ENST00000238497 CLUAP1Q96AJ1 413 aa11.18□□□□□ -0.62
VPS4B-201ENST00000238497 RGS3P49796 1198 aa11.18□□□□□ -0.62
VPS4B-201ENST00000238497 SMARCC1Q92922 1105 aaPredicted RBP11.18□□□□□ -0.62
VPS4B-201ENST00000238497 ASAP1Q9ULH1 1129 aa11.18□□□□□ -0.62
VPS4B-201ENST00000238497 PALLDQ8WX93 1383 aa11.18□□□□□ -0.62
VPS4B-201ENST00000238497 PTCD1O75127 700 aaKnown RBP11.17□□□□□ -0.62
VPS4B-201ENST00000238497 BCAR3O75815 825 aa11.17□□□□□ -0.62
VPS4B-201ENST00000238497 IL13P35225 146 aa11.17□□□□□ -0.62
VPS4B-201ENST00000238497 AMOTQ4VCS5 1084 aa11.17□□□□□ -0.62
VPS4B-201ENST00000238497 MSL1Q68DK7 614 aa11.17□□□□□ -0.62
VPS4B-201ENST00000238497 AK7Q96M32 723 aa11.17□□□□□ -0.62
VPS4B-201ENST00000238497 SPINK5Q9NQ38 1064 aaPredicted RBP11.17□□□□□ -0.62
VPS4B-201ENST00000238497 HSP90AB1P08238 724 aaKnown RBP11.17□□□□□ -0.62
VPS4B-201ENST00000238497 PRKCSHP14314 528 aaPredicted RBP11.17□□□□□ -0.62
VPS4B-201ENST00000238497 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.17□□□□□ -0.622e-6■■□□□ 12.4
VPS4B-201ENST00000238497 ATP6V1AP38606 617 aa11.16□□□□□ -0.62
VPS4B-201ENST00000238497 SMIM5Q71RC9 77 aa11.16□□□□□ -0.62
VPS4B-201ENST00000238497 SBF2Q86WG5 1849 aa11.16□□□□□ -0.62
VPS4B-201ENST00000238497 WNK3Q9BYP7 1800 aa11.16□□□□□ -0.62
VPS4B-201ENST00000238497 FAM208AQ9UK61 1670 aaKnown RBP11.15□□□□□ -0.62
VPS4B-201ENST00000238497 LOC102724428A0A0B4J2F2 783 aa11.15□□□□□ -0.62
VPS4B-201ENST00000238497 SIK1P57059 783 aa11.15□□□□□ -0.62
VPS4B-201ENST00000238497 DCAF5Q96JK2 942 aa11.15□□□□□ -0.62
VPS4B-201ENST00000238497 MTFR1LQ9H019 292 aa11.15□□□□□ -0.62
VPS4B-201ENST00000238497 POLD1P28340 1107 aa11.15□□□□□ -0.62
VPS4B-201ENST00000238497 ERICH6BQ5W0A0 696 aa11.15□□□□□ -0.62
VPS4B-201ENST00000238497 NFATC2IPQ8NCF5 419 aa11.15□□□□□ -0.62
VPS4B-201ENST00000238497 NBR1Q14596 966 aa11.14□□□□□ -0.63
VPS4B-201ENST00000238497 BTAF1O14981 1849 aa11.13□□□□□ -0.63
VPS4B-201ENST00000238497 GNPATO15228 680 aa11.13□□□□□ -0.63
VPS4B-201ENST00000238497 NKX1-1Q15270 411 aaPredicted RBP11.13□□□□□ -0.63
VPS4B-201ENST00000238497 NEFMP07197 916 aa11.12□□□□□ -0.63
VPS4B-201ENST00000238497 ARXQ96QS3 562 aa11.12□□□□□ -0.63
VPS4B-201ENST00000238497 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.12□□□□□ -0.63
VPS4B-201ENST00000238497 AKT1S1Q96B36 256 aa11.12□□□□□ -0.63
VPS4B-201ENST00000238497 LGR6Q9HBX8 967 aa11.12□□□□□ -0.63
VPS4B-201ENST00000238497 ATG3Q9NT62 314 aa11.12□□□□□ -0.63
VPS4B-201ENST00000238497 WWC3Q9ULE0 1092 aa11.12□□□□□ -0.63
VPS4B-201ENST00000238497 ELL2O00472 640 aaPredicted RBP11.12□□□□□ -0.63
VPS4B-201ENST00000238497 PRKAR2BP31323 418 aa11.12□□□□□ -0.63
VPS4B-201ENST00000238497 MTHFSDQ2M296 383 aaKnown RBP11.12□□□□□ -0.63
VPS4B-201ENST00000238497 COL23A1Q86Y22 540 aaPredicted RBP11.12□□□□□ -0.63
VPS4B-201ENST00000238497 FHDC1Q9C0D6 1143 aaPredicted RBP11.12□□□□□ -0.63
VPS4B-201ENST00000238497 NHSQ6T4R5 1651 aa11.12□□□□□ -0.63
VPS4B-201ENST00000238497 PNPLA7Q6ZV29 1317 aa11.11□□□□□ -0.63
VPS4B-201ENST00000238497 NUP188Q5SRE5 1749 aa11.11□□□□□ -0.63
VPS4B-201ENST00000238497 DOT1LQ8TEK3 1739 aa11.11□□□□□ -0.63
VPS4B-201ENST00000238497 ERVV-2B6SEH9 535 aa11.11□□□□□ -0.63
VPS4B-201ENST00000238497 TCERG1O14776 1098 aaKnown RBP11.11□□□□□ -0.63
VPS4B-201ENST00000238497 SLC39A6Q13433 755 aa11.11□□□□□ -0.63
VPS4B-201ENST00000238497 DUSP27Q5VZP5 1158 aa11.11□□□□□ -0.63
VPS4B-201ENST00000238497 COG6Q9Y2V7 657 aa11.11□□□□□ -0.63
VPS4B-201ENST00000238497 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.11□□□□□ -0.63
VPS4B-201ENST00000238497 TEFQ10587 303 aa11.11□□□□□ -0.63
VPS4B-201ENST00000238497 PANK1Q8TE04 598 aa11.11□□□□□ -0.63
VPS4B-201ENST00000238497 MAPK8IP3Q9UPT6 1336 aa11.11□□□□□ -0.63
VPS4B-201ENST00000238497 ANP32AP39687 249 aaKnown RBP11.11□□□□□ -0.63
VPS4B-201ENST00000238497 AKAP4Q5JQC9 854 aa11.11□□□□□ -0.63
VPS4B-201ENST00000238497 ZNF330Q9Y3S2 320 aaPredicted RBP11.11□□□□□ -0.63
VPS4B-201ENST00000238497 TSR2Q969E8 191 aaKnown RBP11.1□□□□□ -0.63
VPS4B-201ENST00000238497 ITPK1Q13572 414 aa11.1□□□□□ -0.63
VPS4B-201ENST00000238497 LINC00116Q8NCU8 138 aa11.09□□□□□ -0.63
VPS4B-201ENST00000238497 UTRNP46939 3433 aa11.09□□□□□ -0.63
VPS4B-201ENST00000238497 HMGB2P26583 209 aaKnown RBP11.09□□□□□ -0.63
VPS4B-201ENST00000238497 SLC16A10Q8TF71 515 aa11.09□□□□□ -0.63
VPS4B-201ENST00000238497 GOLGB1Q14789 3259 aaKnown RBP11.09□□□□□ -0.63
VPS4B-201ENST00000238497 RREB1Q92766 1687 aa11.09□□□□□ -0.63
VPS4B-201ENST00000238497 PTGER2P43116 358 aa11.09□□□□□ -0.63
VPS4B-201ENST00000238497 WWC1Q8IX03 1113 aa11.09□□□□□ -0.63
VPS4B-201ENST00000238497 TTC5Q8N0Z6 440 aa11.09□□□□□ -0.63
VPS4B-201ENST00000238497 GAS2L2Q8NHY3 880 aa11.09□□□□□ -0.63
VPS4B-201ENST00000238497 RTF1Q92541 710 aaKnown RBP11.09□□□□□ -0.63
VPS4B-201ENST00000238497 SYT17Q9BSW7 474 aa11.09□□□□□ -0.63
VPS4B-201ENST00000238497 ANKRD26Q9UPS8 1709 aa11.08□□□□□ -0.63
VPS4B-201ENST00000238497 SLFN5Q08AF3 891 aa11.08□□□□□ -0.64
VPS4B-201ENST00000238497 GPR162Q16538 588 aa11.08□□□□□ -0.64
VPS4B-201ENST00000238497 ANP32EQ9BTT0 268 aa11.08□□□□□ -0.64
VPS4B-201ENST00000238497 RTCBQ9Y3I0 505 aaKnown RBP11.08□□□□□ -0.64
VPS4B-201ENST00000238497 RNMTO43148 476 aaKnown RBP11.08□□□□□ -0.64
VPS4B-201ENST00000238497 FLAD1Q8NFF5 587 aa11.08□□□□□ -0.64
VPS4B-201ENST00000238497 NPC1L1Q9UHC9 1359 aa11.08□□□□□ -0.64
VPS4B-201ENST00000238497 RUNDC1Q96C34 613 aa11.07□□□□□ -0.64
VPS4B-201ENST00000238497 PHACTR3Q96KR7 559 aa11.07□□□□□ -0.64
VPS4B-201ENST00000238497 NCAPD2Q15021 1401 aa11.07□□□□□ -0.64
VPS4B-201ENST00000238497 GNAT3A8MTJ3 354 aa11.07□□□□□ -0.64
VPS4B-201ENST00000238497 SLC52A2Q9HAB3 445 aa11.07□□□□□ -0.64
VPS4B-201ENST00000238497 TNNQ9UQP3 1299 aa11.07□□□□□ -0.64
VPS4B-201ENST00000238497 KDRP35968 1356 aa11.07□□□□□ -0.64
VPS4B-201ENST00000238497 E9PSI1 815 aa11.06□□□□□ -0.64
VPS4B-201ENST00000238497 RFC4P35249 363 aa11.06□□□□□ -0.64
VPS4B-201ENST00000238497 TRAPPC3LQ5T215 181 aa11.06□□□□□ -0.64
VPS4B-201ENST00000238497 AMIGO3Q86WK7 504 aa11.06□□□□□ -0.64
VPS4B-201ENST00000238497 THUMPD2Q9BTF0 503 aaKnown RBP11.06□□□□□ -0.64
VPS4B-201ENST00000238497 KDM6AO15550 1401 aaPredicted RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms