RNA–Protein interactions for RNA: ENST00000229265.10

CDCA3-201, Transcript of cell division cycle associated 3, humanhuman

TSL 2 BASIC

Gene CDCA3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-201ENST00000229265 KIF24Q5T7B8 1368 aa13.81□□□□□ -0.2
CDCA3-201ENST00000229265 COL3A1P02461 1466 aaPredicted RBP13.8□□□□□ -0.2
CDCA3-201ENST00000229265 MS4A1P11836 297 aa13.8□□□□□ -0.2
CDCA3-201ENST00000229265 IL13P35225 146 aa13.8□□□□□ -0.2
CDCA3-201ENST00000229265 EIF4A2Q14240 407 aaKnown RBP13.8□□□□□ -0.2
CDCA3-201ENST00000229265 U2SURPO15042 1029 aaKnown RBP13.79□□□□□ -0.2
CDCA3-201ENST00000229265 IRX6P78412 446 aaPredicted RBP13.79□□□□□ -0.2
CDCA3-201ENST00000229265 AEBP1Q8IUX7 1158 aa13.79□□□□□ -0.2
CDCA3-201ENST00000229265 ZCRB1Q8TBF4 217 aaKnown RBP13.79□□□□□ -0.2
CDCA3-201ENST00000229265 ZBTB7AO95365 584 aa13.78□□□□□ -0.2
CDCA3-201ENST00000229265 PTGER2P43116 358 aa13.78□□□□□ -0.2
CDCA3-201ENST00000229265 LMOD3Q0VAK6 560 aa13.78□□□□□ -0.2
CDCA3-201ENST00000229265 TAF1LQ8IZX4 1826 aa13.78□□□□□ -0.2
CDCA3-201ENST00000229265 SGIP1Q9BQI5 828 aa13.77□□□□□ -0.21
CDCA3-201ENST00000229265 UTRNP46939 3433 aa13.76□□□□□ -0.21
CDCA3-201ENST00000229265 AKT1S1Q96B36 256 aa13.76□□□□□ -0.21
CDCA3-201ENST00000229265 RSPH6AQ9H0K4 717 aa13.76□□□□□ -0.21
CDCA3-201ENST00000229265 ATF5Q9Y2D1 282 aaPredicted RBP13.76□□□□□ -0.21
CDCA3-201ENST00000229265 COL24A1Q17RW2 1714 aa13.76□□□□□ -0.21
CDCA3-201ENST00000229265 RIPK4P57078 832 aa13.75□□□□□ -0.21
CDCA3-201ENST00000229265 SLC15A2Q16348 729 aa13.75□□□□□ -0.21
CDCA3-201ENST00000229265 SPINK5Q9NQ38 1064 aaPredicted RBP13.75□□□□□ -0.21
CDCA3-201ENST00000229265 TSHZ2Q9NRE2 1034 aa13.75□□□□□ -0.21
CDCA3-201ENST00000229265 NFE2L2Q16236 605 aa13.74□□□□□ -0.21
CDCA3-201ENST00000229265 B4GALNT3Q6L9W6 998 aa13.74□□□□□ -0.21
CDCA3-201ENST00000229265 TRIM35Q9UPQ4 493 aa13.74□□□□□ -0.21
CDCA3-201ENST00000229265 GOLGB1Q14789 3259 aaKnown RBP13.74□□□□□ -0.21
CDCA3-201ENST00000229265 QSER1Q2KHR3 1735 aa13.73□□□□□ -0.21
CDCA3-201ENST00000229265 C5P01031 1676 aa13.73□□□□□ -0.21
CDCA3-201ENST00000229265 BRPF1P55201 1214 aaPredicted RBP13.73□□□□□ -0.21
CDCA3-201ENST00000229265 EXOC6Q8TAG9 804 aa13.73□□□□□ -0.21
CDCA3-201ENST00000229265 SYTL4Q96C24 671 aaPredicted RBP13.73□□□□□ -0.21
CDCA3-201ENST00000229265 KDM6AO15550 1401 aaPredicted RBP13.73□□□□□ -0.21
CDCA3-201ENST00000229265 PNPLA7Q6ZV29 1317 aa13.72□□□□□ -0.21
CDCA3-201ENST00000229265 IGSF1Q8N6C5 1336 aa13.72□□□□□ -0.21
CDCA3-201ENST00000229265 RARSP54136 660 aaKnown RBP13.72□□□□□ -0.21
CDCA3-201ENST00000229265 NEUROD2Q15784 382 aa13.72□□□□□ -0.21
CDCA3-201ENST00000229265 SLC4A9Q96Q91 983 aa13.72□□□□□ -0.21
CDCA3-201ENST00000229265 ALDH1L2Q3SY69 923 aa13.71□□□□□ -0.21
CDCA3-201ENST00000229265 PIGBQ92521 554 aa13.71□□□□□ -0.21
CDCA3-201ENST00000229265 VIRMAQ69YN4 1812 aaKnown RBP13.7□□□□□ -0.22
CDCA3-201ENST00000229265 SENP3-EIF4A1A0A087X0R7 540 aa13.7□□□□□ -0.22
CDCA3-201ENST00000229265 TCERG1O14776 1098 aaKnown RBP13.7□□□□□ -0.22
CDCA3-201ENST00000229265 TATP17735 454 aaPredicted RBP13.7□□□□□ -0.22
CDCA3-201ENST00000229265 PRKAR2BP31323 418 aa13.7□□□□□ -0.22
CDCA3-201ENST00000229265 GNAI1P63096 354 aa13.7□□□□□ -0.22
CDCA3-201ENST00000229265 NBPF14Q5TI25 921 aa13.7□□□□□ -0.22
CDCA3-201ENST00000229265 RAPGEF4Q8WZA2 1011 aa13.7□□□□□ -0.22
CDCA3-201ENST00000229265 HTATSF1O43719 755 aaKnown RBP13.69□□□□□ -0.22
CDCA3-201ENST00000229265 PHKG2P15735 406 aa13.69□□□□□ -0.22
CDCA3-201ENST00000229265 NKX1-1Q15270 411 aaPredicted RBP13.69□□□□□ -0.22
CDCA3-201ENST00000229265 CHMP4BQ9H444 224 aaKnown RBP13.69□□□□□ -0.22
CDCA3-201ENST00000229265 IFT57Q9NWB7 429 aa13.69□□□□□ -0.22
CDCA3-201ENST00000229265 ASAP1Q9ULH1 1129 aa13.69□□□□□ -0.22
CDCA3-201ENST00000229265 UBR3Q6ZT12 1888 aa13.69□□□□□ -0.22
CDCA3-201ENST00000229265 IPO8O15397 1037 aaKnown RBP13.68□□□□□ -0.22
CDCA3-201ENST00000229265 ITPK1Q13572 414 aa13.68□□□□□ -0.22
CDCA3-201ENST00000229265 MPRIPQ6WCQ1 1025 aa13.68□□□□□ -0.22
CDCA3-201ENST00000229265 CENPQQ7L2Z9 268 aaPredicted RBP13.68□□□□□ -0.22
CDCA3-201ENST00000229265 RRP7AQ9Y3A4 280 aaKnown RBP13.68□□□□□ -0.22
CDCA3-201ENST00000229265 C4BP0C0L5 1744 aa13.67□□□□□ -0.22
CDCA3-201ENST00000229265 PCDH11XQ9BZA7 1347 aa13.67□□□□□ -0.22
CDCA3-201ENST00000229265 PCDH11YQ9BZA8 1340 aa13.67□□□□□ -0.22
CDCA3-201ENST00000229265 ZNF853P0CG23 659 aa13.67□□□□□ -0.22
CDCA3-201ENST00000229265 COL23A1Q86Y22 540 aaPredicted RBP13.67□□□□□ -0.22
CDCA3-201ENST00000229265 POTEDQ86YR6 584 aa13.67□□□□□ -0.22
CDCA3-201ENST00000229265 ARHGAP45Q92619 1136 aa13.67□□□□□ -0.22
CDCA3-201ENST00000229265 CFAP44Q96MT7 982 aa13.67□□□□□ -0.22
CDCA3-201ENST00000229265 CRBNQ96SW2 442 aa13.67□□□□□ -0.22
CDCA3-201ENST00000229265 STK32BQ9NY57 414 aa13.67□□□□□ -0.22
CDCA3-201ENST00000229265 MYH14Q7Z406 1995 aaKnown RBP13.67□□□□□ -0.22
CDCA3-201ENST00000229265 PLIN1O60240 522 aa13.66□□□□□ -0.22
CDCA3-201ENST00000229265 LINC00116Q8NCU8 138 aa13.66□□□□□ -0.22
CDCA3-201ENST00000229265 SPON1Q9HCB6 807 aa13.66□□□□□ -0.22
CDCA3-201ENST00000229265 PALLDQ8WX93 1383 aa13.66□□□□□ -0.22
CDCA3-201ENST00000229265 BCAR3O75815 825 aa13.65□□□□□ -0.22
CDCA3-201ENST00000229265 ATG3Q9NT62 314 aa13.65□□□□□ -0.22
CDCA3-201ENST00000229265 BABAM1Q9NWV8 329 aa13.65□□□□□ -0.22
CDCA3-201ENST00000229265 CCNL1Q9UK58 526 aaPredicted RBP13.65□□□□□ -0.22
CDCA3-201ENST00000229265 SCN11AQ9UI33 1791 aa13.65□□□□□ -0.22
CDCA3-201ENST00000229265 KDRP35968 1356 aa13.64□□□□□ -0.23
CDCA3-201ENST00000229265 ZKSCAN2Q63HK3 967 aa13.64□□□□□ -0.23
CDCA3-201ENST00000229265 MSL1Q68DK7 614 aa13.64□□□□□ -0.23
CDCA3-201ENST00000229265 FHDC1Q9C0D6 1143 aaPredicted RBP13.64□□□□□ -0.23
CDCA3-201ENST00000229265 COL5A3P25940 1745 aaPredicted RBP13.64□□□□□ -0.23
CDCA3-201ENST00000229265 TJP1Q07157 1748 aa13.64□□□□□ -0.23
CDCA3-201ENST00000229265 FANCIQ9NVI1 1328 aa13.64□□□□□ -0.23
CDCA3-201ENST00000229265 HMOX1P09601 288 aa13.63□□□□□ -0.23
CDCA3-201ENST00000229265 SULT6B1Q6IMI4 303 aa13.63□□□□□ -0.23
CDCA3-201ENST00000229265 PHACTR3Q96KR7 559 aa13.63□□□□□ -0.23
CDCA3-201ENST00000229265 RBM19Q9Y4C8 960 aaKnown RBP13.63□□□□□ -0.23
CDCA3-201ENST00000229265 ADAMTS7Q9UKP4 1686 aa13.63□□□□□ -0.23
CDCA3-201ENST00000229265 CANXP27824 592 aaKnown RBP13.62□□□□□ -0.23
CDCA3-201ENST00000229265 EXOSC9Q06265 439 aaKnown RBP13.62□□□□□ -0.23
CDCA3-201ENST00000229265 NLGN2Q8NFZ4 835 aa13.62□□□□□ -0.23
CDCA3-201ENST00000229265 CHMP4AQ9BY43 222 aa13.62□□□□□ -0.23
CDCA3-201ENST00000229265 LGR6Q9HBX8 967 aa13.62□□□□□ -0.23
CDCA3-201ENST00000229265 SOS1Q07889 1333 aaPredicted RBP13.62□□□□□ -0.23
CDCA3-201ENST00000229265 KIF16BQ96L93 1317 aa13.62□□□□□ -0.23
CDCA3-201ENST00000229265 SLC27A3Q5K4L6 730 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms