RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 ESYT1Q9BSJ8 1104 aa15.14■□□□□ 0.01
NUP88-201ENST00000225696 SALL3Q9BXA9 1300 aa15.14■□□□□ 0.01
NUP88-201ENST00000225696 KIAA0232Q92628 1395 aa15.14■□□□□ 0.01
NUP88-201ENST00000225696 MPNDQ8N594 471 aa15.14■□□□□ 0.01
NUP88-201ENST00000225696 UPF3BQ9BZI7 483 aaKnown RBP15.14■□□□□ 0.01
NUP88-201ENST00000225696 PDCL3Q9H2J4 239 aa15.14■□□□□ 0.01
NUP88-201ENST00000225696 ZKSCAN5Q9Y2L8 839 aa15.14■□□□□ 0.01
NUP88-201ENST00000225696 GADD45BO75293 160 aaPredicted RBP15.13■□□□□ 0.01
NUP88-201ENST00000225696 ZBTB7CA1YPR0 619 aa15.12■□□□□ 0.01
NUP88-201ENST00000225696 FAM13BQ9NYF5 915 aa15.12■□□□□ 0.01
NUP88-201ENST00000225696 NECTIN2Q92692 538 aa15.12■□□□□ 0.01
NUP88-201ENST00000225696 RILPL2Q969X0 211 aa15.12■□□□□ 0.01
NUP88-201ENST00000225696 ANO2Q9NQ90 1003 aa15.12■□□□□ 0.01
NUP88-201ENST00000225696 CUL4AQ13619 759 aa15.11■□□□□ 0.01
NUP88-201ENST00000225696 MLECQ14165 292 aa15.11■□□□□ 0.01
NUP88-201ENST00000225696 MTHFSDQ2M296 383 aaKnown RBP15.11■□□□□ 0.01
NUP88-201ENST00000225696 C3P01024 1663 aa15.11■□□□□ 0.01
NUP88-201ENST00000225696 MON2Q7Z3U7 1717 aa15.11■□□□□ 0.01
NUP88-201ENST00000225696 HMMRO75330 724 aa15.11■□□□□ 0.01
NUP88-201ENST00000225696 CHMLP26374 656 aa15.11■□□□□ 0.01
NUP88-201ENST00000225696 DTNBO60941 627 aa15.1■□□□□ 0.01
NUP88-201ENST00000225696 MX1P20591 662 aa15.1■□□□□ 0.01
NUP88-201ENST00000225696 TPRNQ4KMQ1 711 aa15.1■□□□□ 0.01
NUP88-201ENST00000225696 TSPYL4Q9UJ04 414 aa15.1■□□□□ 0.01
NUP88-201ENST00000225696 MAP3K19Q56UN5 1328 aa15.1■□□□□ 0.01
NUP88-201ENST00000225696 NRXN3Q9Y4C0 1643 aa15.1■□□□□ 0.01
NUP88-201ENST00000225696 TTC21BQ7Z4L5 1316 aa15.09■□□□□ 0.01
NUP88-201ENST00000225696 UQCRHLA0A096LP55 91 aa15.09■□□□□ 0.01
NUP88-201ENST00000225696 TRIM6-TRIM34B2RNG4 842 aa15.09■□□□□ 0.01
NUP88-201ENST00000225696 GNAI2P04899 355 aa15.09■□□□□ 0.01
NUP88-201ENST00000225696 UQCRHP07919 91 aa15.09■□□□□ 0.01
NUP88-201ENST00000225696 TRHP20396 242 aaPredicted RBP15.09■□□□□ 0.01
NUP88-201ENST00000225696 LRRCC1Q9C099 1032 aa15.09■□□□□ 0.01
NUP88-201ENST00000225696 PEAK1Q9H792 1746 aa15.09■□□□□ 0.01
NUP88-201ENST00000225696 NRKQ7Z2Y5 1582 aa15.09■□□□□ 0.01
NUP88-201ENST00000225696 JARID2Q92833 1246 aaPredicted RBP15.08■□□□□ 0.01
NUP88-201ENST00000225696 LARP6Q9BRS8 491 aaKnown RBP15.08■□□□□ 0.01
NUP88-201ENST00000225696 RIMS1Q86UR5 1692 aaKnown RBP15.08■□□□□ 0
NUP88-201ENST00000225696 MAP4K4O95819 1239 aaPredicted RBP15.08■□□□□ 0
NUP88-201ENST00000225696 CCT4P50991 539 aaKnown RBP15.08■□□□□ 0
NUP88-201ENST00000225696 HAP1P54257 671 aaPredicted RBP15.08■□□□□ 0
NUP88-201ENST00000225696 TERF1P54274 439 aa15.08■□□□□ 0
NUP88-201ENST00000225696 ARID3AQ99856 593 aa15.08■□□□□ 0
NUP88-201ENST00000225696 ACEP12821 1306 aa15.07■□□□□ 0
NUP88-201ENST00000225696 MBD3O95983 291 aa15.07■□□□□ 0
NUP88-201ENST00000225696 USP48Q86UV5 1035 aa15.07■□□□□ 0
NUP88-201ENST00000225696 ZNF830Q96NB3 372 aaPredicted RBP15.07■□□□□ 0
NUP88-201ENST00000225696 IL1RAPL2Q9NP60 686 aa15.07■□□□□ 0
NUP88-201ENST00000225696 TUBGCP6Q96RT7 1819 aa15.06■□□□□ 0
NUP88-201ENST00000225696 TCHHQ07283 1943 aa15.06■□□□□ 0
NUP88-201ENST00000225696 TSPY26PQ9H489 355 aa15.06■□□□□ 0
NUP88-201ENST00000225696 CCDC39Q9UFE4 941 aa15.06■□□□□ 0
NUP88-201ENST00000225696 LRRFIP2Q9Y608 721 aaKnown RBP15.06■□□□□ 0
NUP88-201ENST00000225696 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.06■□□□□ 0
NUP88-201ENST00000225696 AKAP12Q02952 1782 aa15.06■□□□□ 0
NUP88-201ENST00000225696 FLIIQ13045 1269 aa15.05■□□□□ 0
NUP88-201ENST00000225696 FKBP5Q13451 457 aaPredicted RBP15.05■□□□□ 0
NUP88-201ENST00000225696 NUTM1Q86Y26 1132 aa15.05■□□□□ 0
NUP88-201ENST00000225696 ROBO2Q9HCK4 1378 aa15.05■□□□□ 0
NUP88-201ENST00000225696 OVOS2A0A0J9YW53 1432 aa15.05■□□□□ -0
NUP88-201ENST00000225696 ATP8B2P98198 1209 aa15.05■□□□□ -0
NUP88-201ENST00000225696 OVOS2Q6IE36 1432 aa15.05■□□□□ -0
NUP88-201ENST00000225696 INTS4Q96HW7 963 aaKnown RBP15.05■□□□□ -0
NUP88-201ENST00000225696 MCM2P49736 904 aa15.04■□□□□ -0
NUP88-201ENST00000225696 C17orf53Q8N3J3 647 aaPredicted RBP15.04■□□□□ -0
NUP88-201ENST00000225696 RTF1Q92541 710 aaKnown RBP15.04■□□□□ -0
NUP88-201ENST00000225696 SRCIN1Q9C0H9 1055 aa15.04■□□□□ -0
NUP88-201ENST00000225696 RGPD1P0DJD0 1748 aa15.03■□□□□ -0
NUP88-201ENST00000225696 ANAPC15P60006 121 aa15.03■□□□□ -0
NUP88-201ENST00000225696 STAP2Q9UGK3 403 aa15.03■□□□□ -0
NUP88-201ENST00000225696 ITSN1Q15811 1721 aa15.03■□□□□ -0
NUP88-201ENST00000225696 MCCP23508 829 aa15.02■□□□□ -0
NUP88-201ENST00000225696 MCM5P33992 734 aa15.02■□□□□ -0
NUP88-201ENST00000225696 TSC1Q92574 1164 aa15.02■□□□□ -0
NUP88-201ENST00000225696 USP44Q9H0E7 712 aa15.02■□□□□ -0
NUP88-201ENST00000225696 CNPY2Q9Y2B0 182 aa15.02■□□□□ -0
NUP88-201ENST00000225696 RPAP1Q9BWH6 1393 aaPredicted RBP15.02■□□□□ -0
NUP88-201ENST00000225696 PTMAP06454 111 aaKnown RBP15.02□□□□□ -0.01
NUP88-201ENST00000225696 CPA1P15085 419 aa15.02□□□□□ -0.01
NUP88-201ENST00000225696 EYA1Q99502 592 aa15.02□□□□□ -0.01
NUP88-201ENST00000225696 USP25Q9UHP3 1055 aa15.02□□□□□ -0.01
NUP88-201ENST00000225696 RASEFQ8IZ41 740 aa15.01□□□□□ -0.01
NUP88-201ENST00000225696 STK31Q9BXU1 1019 aa15.01□□□□□ -0.01
NUP88-201ENST00000225696 SPATA31D1Q6ZQQ2 1576 aa15.01□□□□□ -0.01
NUP88-201ENST00000225696 HSPA4P34932 840 aa15.01□□□□□ -0.01
NUP88-201ENST00000225696 CEP170BQ9Y4F5 1589 aaPredicted RBP15.01□□□□□ -0.01
NUP88-201ENST00000225696 GNAI3P08754 354 aa15□□□□□ -0.01
NUP88-201ENST00000225696 CSPP1Q1MSJ5 1256 aa15□□□□□ -0.01
NUP88-201ENST00000225696 IL17RAQ96F46 866 aa15□□□□□ -0.01
NUP88-201ENST00000225696 SASS6Q6UVJ0 657 aa15□□□□□ -0.01
NUP88-201ENST00000225696 PHAXQ9H814 394 aaKnown RBP15□□□□□ -0.01
NUP88-201ENST00000225696 TTC12Q9H892 705 aaPredicted RBP15□□□□□ -0.01
NUP88-201ENST00000225696 TECPR2O15040 1411 aa14.99□□□□□ -0.01
NUP88-201ENST00000225696 USP6P35125 1406 aa14.99□□□□□ -0.01
NUP88-201ENST00000225696 HCLS1P14317 486 aaPredicted RBP14.99□□□□□ -0.01
NUP88-201ENST00000225696 SNX14Q9Y5W7 946 aa14.99□□□□□ -0.01
NUP88-201ENST00000225696 LARGE1O95461 756 aa14.98□□□□□ -0.01
NUP88-201ENST00000225696 RUFY3Q7L099 469 aa14.98□□□□□ -0.01
NUP88-201ENST00000225696 PI4K2BQ8TCG2 481 aa14.98□□□□□ -0.01
NUP88-201ENST00000225696 WDR33Q9C0J8 1336 aaKnown RBP14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms