RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 K7ELQ4 463 aaPredicted RBP22.28■■□□□ 1.16
SMPD3-201ENST00000219334 IDI1Q13907 227 aa22.28■■□□□ 1.16
SMPD3-201ENST00000219334 TOP2BQ02880 1626 aa22.28■■□□□ 1.16
SMPD3-201ENST00000219334 ANKRD18BA2A2Z9 1011 aa22.27■■□□□ 1.16
SMPD3-201ENST00000219334 DESP17661 470 aa22.27■■□□□ 1.16
SMPD3-201ENST00000219334 PAXIP1Q6ZW49 1069 aaPredicted RBP22.27■■□□□ 1.16
SMPD3-201ENST00000219334 NAPBQ9H115 298 aa22.27■■□□□ 1.16
SMPD3-201ENST00000219334 TMEM57Q8N5G2 664 aa22.27■■□□□ 1.16
SMPD3-201ENST00000219334 HYPKQ9NX55 129 aa22.27■■□□□ 1.16
SMPD3-201ENST00000219334 AKNAQ7Z591 1439 aa22.27■■□□□ 1.16
SMPD3-201ENST00000219334 NOM1Q5C9Z4 860 aaKnown RBP22.27■■□□□ 1.16
SMPD3-201ENST00000219334 IBSPP21815 317 aaPredicted RBP22.26■■□□□ 1.15
SMPD3-201ENST00000219334 ZNF219Q9P2Y4 722 aaPredicted RBP22.26■■□□□ 1.15
SMPD3-201ENST00000219334 TRIM21P19474 475 aaKnown RBP22.26■■□□□ 1.15
SMPD3-201ENST00000219334 SPATA32Q96LK8 384 aa22.26■■□□□ 1.15
SMPD3-201ENST00000219334 PDIA4P13667 645 aaKnown RBP22.26■■□□□ 1.15
SMPD3-201ENST00000219334 CEP57L1Q8IYX8 460 aa22.26■■□□□ 1.15
SMPD3-201ENST00000219334 DBF4Q9UBU7 674 aaPredicted RBP22.26■■□□□ 1.15
SMPD3-201ENST00000219334 C6orf229H3BNL8 230 aa22.25■■□□□ 1.15
SMPD3-201ENST00000219334 ERLIN2O94905 339 aa22.25■■□□□ 1.15
SMPD3-201ENST00000219334 CEP131Q9UPN4 1083 aa22.25■■□□□ 1.15
SMPD3-201ENST00000219334 ZNF444Q8N0Y2 327 aaPredicted RBP22.25■■□□□ 1.15
SMPD3-201ENST00000219334 BCL11BQ9C0K0 894 aaPredicted RBP22.25■■□□□ 1.15
SMPD3-201ENST00000219334 EMILIN1Q9Y6C2 1016 aa22.25■■□□□ 1.15
SMPD3-201ENST00000219334 IFNL2Q8IZJ0 200 aa22.25■■□□□ 1.15
SMPD3-201ENST00000219334 TIAM1Q13009 1591 aa22.24■■□□□ 1.15
SMPD3-201ENST00000219334 DNAAF4Q8WXU2 420 aa22.24■■□□□ 1.15
SMPD3-201ENST00000219334 WDR78Q5VTH9 848 aa22.24■■□□□ 1.15
SMPD3-201ENST00000219334 CCDC196A0A1B0GTZ2 297 aa22.24■■□□□ 1.15
SMPD3-201ENST00000219334 MX1P20591 662 aa22.24■■□□□ 1.15
SMPD3-201ENST00000219334 SCLT1Q96NL6 688 aa22.24■■□□□ 1.15
SMPD3-201ENST00000219334 ABCC11Q96J66 1382 aa22.23■■□□□ 1.15
SMPD3-201ENST00000219334 BOLA2Q9H3K6 86 aa22.23■■□□□ 1.15
SMPD3-201ENST00000219334 IQGAP2Q13576 1575 aa22.23■■□□□ 1.15
SMPD3-201ENST00000219334 CTCFLQ8NI51 663 aaPredicted RBP22.23■■□□□ 1.15
SMPD3-201ENST00000219334 SEPT11Q9NVA2 429 aaKnown RBP22.23■■□□□ 1.15
SMPD3-201ENST00000219334 SLFN5Q08AF3 891 aa22.23■■□□□ 1.15
SMPD3-201ENST00000219334 DENND4BO75064 1496 aaPredicted RBP22.23■■□□□ 1.15
SMPD3-201ENST00000219334 A0A087WZG4 1122 aa22.22■■□□□ 1.15
SMPD3-201ENST00000219334 CBFA2T2O43439 604 aa22.22■■□□□ 1.15
SMPD3-201ENST00000219334 GPTP24298 496 aa22.22■■□□□ 1.15
SMPD3-201ENST00000219334 CCDC96Q2M329 555 aa22.22■■□□□ 1.15
SMPD3-201ENST00000219334 ALDH1L2Q3SY69 923 aa22.22■■□□□ 1.15
SMPD3-201ENST00000219334 PPP4R3AQ6IN85 833 aa22.22■■□□□ 1.15
SMPD3-201ENST00000219334 IQCA1Q86XH1 822 aa22.22■■□□□ 1.15
SMPD3-201ENST00000219334 NEFHP12036 1026 aa22.21■■□□□ 1.15
SMPD3-201ENST00000219334 CASTP20810 708 aaKnown RBP22.21■■□□□ 1.15
SMPD3-201ENST00000219334 CDC5LQ99459 802 aaKnown RBP22.21■■□□□ 1.15
SMPD3-201ENST00000219334 CHMP4BP1P59074 171 aa22.21■■□□□ 1.15
SMPD3-201ENST00000219334 ZBTB3Q9H5J0 574 aa22.21■■□□□ 1.15
SMPD3-201ENST00000219334 SKIDA1Q1XH10 827 aa22.2■■□□□ 1.14
SMPD3-201ENST00000219334 DNAI2Q9GZS0 605 aa22.2■■□□□ 1.14
SMPD3-201ENST00000219334 TTC21BQ7Z4L5 1316 aa22.2■■□□□ 1.14
SMPD3-201ENST00000219334 PPP1R12BO60237 982 aaPredicted RBP22.2■■□□□ 1.14
SMPD3-201ENST00000219334 CCDC181Q5TID7 509 aa22.2■■□□□ 1.14
SMPD3-201ENST00000219334 DDX46Q7L014 1031 aaKnown RBP22.2■■□□□ 1.14
SMPD3-201ENST00000219334 DDX11Q96FC9 970 aa22.2■■□□□ 1.14
SMPD3-201ENST00000219334 RANBP6O60518 1105 aaKnown RBP22.2■■□□□ 1.14
SMPD3-201ENST00000219334 TOM1O60784 492 aa22.2■■□□□ 1.14
SMPD3-201ENST00000219334 NEBLO76041 1014 aa22.2■■□□□ 1.14
SMPD3-201ENST00000219334 CUL5Q93034 780 aa22.2■■□□□ 1.14
SMPD3-201ENST00000219334 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.19■■□□□ 1.14
SMPD3-201ENST00000219334 RNF41Q9H4P4 317 aaPredicted RBP22.19■■□□□ 1.14
SMPD3-201ENST00000219334 LDHCP07864 332 aa22.19■■□□□ 1.14
SMPD3-201ENST00000219334 RFC4P35249 363 aa22.19■■□□□ 1.14
SMPD3-201ENST00000219334 ADGRF5Q8IZF2 1346 aa22.19■■□□□ 1.14
SMPD3-201ENST00000219334 SPC24Q8NBT2 197 aa22.18■■□□□ 1.14
SMPD3-201ENST00000219334 PLB1Q6P1J6 1458 aa22.18■■□□□ 1.14
SMPD3-201ENST00000219334 PPP1R42Q7Z4L9 355 aa22.18■■□□□ 1.14
SMPD3-201ENST00000219334 CAMSAP2Q08AD1 1489 aa22.17■■□□□ 1.14
SMPD3-201ENST00000219334 MSH6P52701 1360 aa22.17■■□□□ 1.14
SMPD3-201ENST00000219334 POTEJP0CG39 1038 aa22.17■■□□□ 1.14
SMPD3-201ENST00000219334 PRPF40BQ6NWY9 871 aaKnown RBP22.16■■□□□ 1.14
SMPD3-201ENST00000219334 ABCA10Q8WWZ4 1543 aa22.16■■□□□ 1.14
SMPD3-201ENST00000219334 UBAP1LF5GYI3 381 aa22.16■■□□□ 1.14
SMPD3-201ENST00000219334 CCDC8Q9H0W5 538 aaPredicted RBP22.16■■□□□ 1.14
SMPD3-201ENST00000219334 ZNF622Q969S3 477 aaKnown RBP eCLIP22.16■■□□□ 1.14
SMPD3-201ENST00000219334 ANKRD18AQ8IVF6 992 aa22.16■■□□□ 1.14
SMPD3-201ENST00000219334 SSH1Q8WYL5 1049 aa22.16■■□□□ 1.14
SMPD3-201ENST00000219334 F6X3S4 739 aa22.15■■□□□ 1.14
SMPD3-201ENST00000219334 ZNF213O14771 459 aa22.15■■□□□ 1.14
SMPD3-201ENST00000219334 EIF5P55010 431 aaKnown RBP22.15■■□□□ 1.14
SMPD3-201ENST00000219334 FEZ1Q99689 392 aa22.15■■□□□ 1.14
SMPD3-201ENST00000219334 RAB34Q9BZG1 259 aa22.15■■□□□ 1.14
SMPD3-201ENST00000219334 NUP62CLQ9H1M0 184 aa22.15■■□□□ 1.14
SMPD3-201ENST00000219334 EHMT1Q9H9B1 1298 aa22.15■■□□□ 1.14
SMPD3-201ENST00000219334 LDHAL6AQ6ZMR3 332 aa22.15■■□□□ 1.14
SMPD3-201ENST00000219334 ANKRD24Q8TF21 1146 aa22.15■■□□□ 1.14
SMPD3-201ENST00000219334 NAIPQ13075 1403 aa22.14■■□□□ 1.14
SMPD3-201ENST00000219334 KIF14Q15058 1648 aa22.14■■□□□ 1.13
SMPD3-201ENST00000219334 HMGB1P09429 215 aaKnown RBP22.14■■□□□ 1.13
SMPD3-201ENST00000219334 ZRSR2Q15696 482 aaKnown RBP22.14■■□□□ 1.13
SMPD3-201ENST00000219334 CHRNA2Q15822 529 aa22.14■■□□□ 1.13
SMPD3-201ENST00000219334 CWC25Q9NXE8 425 aaPredicted RBP22.14■■□□□ 1.13
SMPD3-201ENST00000219334 SEPT7Q16181 437 aaKnown RBP22.14■■□□□ 1.13
SMPD3-201ENST00000219334 UPF3BQ9BZI7 483 aaKnown RBP22.13■■□□□ 1.13
SMPD3-201ENST00000219334 LRRFIP2Q9Y608 721 aaKnown RBP22.13■■□□□ 1.13
SMPD3-201ENST00000219334 SLC12A7Q9Y666 1083 aa22.13■■□□□ 1.13
SMPD3-201ENST00000219334 MYCNP04198 464 aaPredicted RBP22.13■■□□□ 1.13
SMPD3-201ENST00000219334 ST5P78524 1137 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms