RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 EP400Q96L91 3159 aa35.59■■■■□ 3.29
CHMP4B-201ENST00000217402 NHSQ6T4R5 1651 aa35.57■■■■□ 3.29
CHMP4B-201ENST00000217402 SIPA1L3O60292 1781 aaPredicted RBP35.57■■■■□ 3.28
CHMP4B-201ENST00000217402 PIGBQ92521 554 aa35.57■■■■□ 3.28
CHMP4B-201ENST00000217402 SBF2Q86WG5 1849 aa35.56■■■■□ 3.28
CHMP4B-201ENST00000217402 TAF7Q15545 349 aaPredicted RBP35.56■■■■□ 3.28
CHMP4B-201ENST00000217402 PTF1AQ7RTS3 328 aa35.56■■■■□ 3.28
CHMP4B-201ENST00000217402 MIS18AQ9NYP9 233 aa35.56■■■■□ 3.28
CHMP4B-201ENST00000217402 GOLGA2Q08379 1002 aa35.54■■■■□ 3.28
CHMP4B-201ENST00000217402 BTBD11A6QL63 1104 aa35.54■■■■□ 3.28
CHMP4B-201ENST00000217402 SPINK5Q9NQ38 1064 aaPredicted RBP35.54■■■■□ 3.28
CHMP4B-201ENST00000217402 IL16Q14005 1332 aa35.53■■■■□ 3.28
CHMP4B-201ENST00000217402 TRIM37O94972 964 aa35.53■■■■□ 3.28
CHMP4B-201ENST00000217402 IFT57Q9NWB7 429 aa35.53■■■■□ 3.28
CHMP4B-201ENST00000217402 CDCA7LQ96GN5 454 aa35.52■■■■□ 3.28
CHMP4B-201ENST00000217402 CFAP44Q96MT7 982 aa35.52■■■■□ 3.28
CHMP4B-201ENST00000217402 GNAI1P63096 354 aa35.51■■■■□ 3.28
CHMP4B-201ENST00000217402 TSPYL4Q9UJ04 414 aa35.5■■■■□ 3.27
CHMP4B-201ENST00000217402 SLC39A6Q13433 755 aa35.5■■■■□ 3.27
CHMP4B-201ENST00000217402 ZNF853P0CG23 659 aa35.49■■■■□ 3.27
CHMP4B-201ENST00000217402 BCL11BQ9C0K0 894 aaPredicted RBP35.49■■■■□ 3.27
CHMP4B-201ENST00000217402 CHL1O00533 1208 aa35.48■■■■□ 3.27
CHMP4B-201ENST00000217402 TSR2Q969E8 191 aaKnown RBP35.48■■■■□ 3.27
CHMP4B-201ENST00000217402 MBIPQ9NS73 344 aa35.47■■■■□ 3.27
CHMP4B-201ENST00000217402 ASAP1Q9ULH1 1129 aa35.47■■■■□ 3.27
CHMP4B-201ENST00000217402 BTAF1O14981 1849 aa35.46■■■■□ 3.27
CHMP4B-201ENST00000217402 KCNQ3O43525 872 aa35.46■■■■□ 3.27
CHMP4B-201ENST00000217402 E9PSI1 815 aa35.45■■■■□ 3.27
CHMP4B-201ENST00000217402 KDM3BQ7LBC6 1761 aa35.44■■■■□ 3.26
CHMP4B-201ENST00000217402 PAPPAQ13219 1627 aa35.44■■■■□ 3.26
CHMP4B-201ENST00000217402 ZNF790Q6PG37 636 aa35.44■■■■□ 3.26
CHMP4B-201ENST00000217402 MYH16Q9H6N6 1097 aa35.44■■■■□ 3.26
CHMP4B-201ENST00000217402 ATG3Q9NT62 314 aa35.44■■■■□ 3.26
CHMP4B-201ENST00000217402 SLFN5Q08AF3 891 aa35.43■■■■□ 3.26
CHMP4B-201ENST00000217402 TTC5Q8N0Z6 440 aa35.43■■■■□ 3.26
CHMP4B-201ENST00000217402 BABAM1Q9NWV8 329 aa35.43■■■■□ 3.26
CHMP4B-201ENST00000217402 FANCIQ9NVI1 1328 aa35.43■■■■□ 3.26
CHMP4B-201ENST00000217402 ILDR2Q71H61 639 aa35.39■■■■□ 3.26
CHMP4B-201ENST00000217402 PALLDQ8WX93 1383 aa35.38■■■■□ 3.25
CHMP4B-201ENST00000217402 PTCD1O75127 700 aaKnown RBP35.38■■■■□ 3.25
CHMP4B-201ENST00000217402 TNS1Q9HBL0 1735 aaKnown RBP35.37■■■■□ 3.25
CHMP4B-201ENST00000217402 KCPQ6ZWJ8 1503 aa35.36■■■■□ 3.25
CHMP4B-201ENST00000217402 SMARCC1Q92922 1105 aaPredicted RBP35.35■■■■□ 3.25
CHMP4B-201ENST00000217402 ZNF496Q96IT1 587 aaPredicted RBP35.35■■■■□ 3.25
CHMP4B-201ENST00000217402 UBR2Q8IWV8 1755 aa35.35■■■■□ 3.25
CHMP4B-201ENST00000217402 EIF4A1P60842 406 aaKnown RBP35.35■■■■□ 3.25
CHMP4B-201ENST00000217402 DUSP27Q5VZP5 1158 aa35.35■■■■□ 3.25
CHMP4B-201ENST00000217402 RBM42Q9BTD8 480 aaKnown RBP35.35■■■■□ 3.25
CHMP4B-201ENST00000217402 APBA3O96018 575 aa35.34■■■■□ 3.25
CHMP4B-201ENST00000217402 KRT24Q2M2I5 525 aa35.34■■■■□ 3.25
CHMP4B-201ENST00000217402 TRMT2AQ8IZ69 625 aaKnown RBP35.34■■■■□ 3.25
CHMP4B-201ENST00000217402 FMNL2Q96PY5 1086 aa35.32■■■■□ 3.25
CHMP4B-201ENST00000217402 EXOSC9Q06265 439 aaKnown RBP35.3■■■■□ 3.24
CHMP4B-201ENST00000217402 SF3B2Q13435 895 aaKnown RBP35.28■■■■□ 3.24
CHMP4B-201ENST00000217402 C8orf58Q8NAV2 365 aa35.28■■■■□ 3.24
CHMP4B-201ENST00000217402 HEG1Q9ULI3 1381 aa35.28■■■■□ 3.24
CHMP4B-201ENST00000217402 ELL2O00472 640 aaPredicted RBP35.28■■■■□ 3.24
CHMP4B-201ENST00000217402 LOC102724428A0A0B4J2F2 783 aa35.27■■■■□ 3.24
CHMP4B-201ENST00000217402 SIK1P57059 783 aa35.27■■■■□ 3.24
CHMP4B-201ENST00000217402 SLC4A9Q96Q91 983 aa35.26■■■■□ 3.24
CHMP4B-201ENST00000217402 PRAMEF22A3QJZ6 481 aa35.25■■■■□ 3.23
CHMP4B-201ENST00000217402 TSPYL6Q8N831 410 aa35.25■■■■□ 3.23
CHMP4B-201ENST00000217402 LY75O60449 1722 aa35.24■■■■□ 3.23
CHMP4B-201ENST00000217402 KCNQ4P56696 695 aa35.24■■■■□ 3.23
CHMP4B-201ENST00000217402 GIGYF1O75420 1035 aaPredicted RBP35.23■■■■□ 3.23
CHMP4B-201ENST00000217402 ATP6V1AP38606 617 aa35.23■■■■□ 3.23
CHMP4B-201ENST00000217402 SNRPA1P09661 255 aaKnown RBP35.22■■■■□ 3.23
CHMP4B-201ENST00000217402 C5P01031 1676 aa35.22■■■■□ 3.23
CHMP4B-201ENST00000217402 PLSCR1O15162 318 aa35.21■■■■□ 3.23
CHMP4B-201ENST00000217402 TWISTNBQ3B726 338 aaPredicted RBP35.21■■■■□ 3.23
CHMP4B-201ENST00000217402 CCNL1Q9UK58 526 aaPredicted RBP35.21■■■■□ 3.23
CHMP4B-201ENST00000217402 DNAJC10Q8IXB1 793 aa35.2■■■■□ 3.23
CHMP4B-201ENST00000217402 VSIG10Q8N0Z9 540 aa35.2■■■■□ 3.23
CHMP4B-201ENST00000217402 CCDC125Q86Z20 511 aa35.19■■■■□ 3.22
CHMP4B-201ENST00000217402 TJP1Q07157 1748 aa35.18■■■■□ 3.22
CHMP4B-201ENST00000217402 BAG6P46379 1132 aa35.18■■■■□ 3.22
CHMP4B-201ENST00000217402 EN1Q05925 392 aaPredicted RBP35.18■■■■□ 3.22
CHMP4B-201ENST00000217402 ITPK1Q13572 414 aa35.18■■■■□ 3.22
CHMP4B-201ENST00000217402 UPF1Q92900 1129 aaKnown RBP eCLIP35.18■■■■□ 3.22
CHMP4B-201ENST00000217402 DEFB132Q7Z7B7 95 aa35.17■■■■□ 3.22
CHMP4B-201ENST00000217402 TXNRD1Q16881 649 aa35.17■■■■□ 3.22
CHMP4B-201ENST00000217402 NECTIN2Q92692 538 aa35.16■■■■□ 3.22
CHMP4B-201ENST00000217402 USP16Q9Y5T5 823 aa35.16■■■■□ 3.22
CHMP4B-201ENST00000217402 RGPD3A6NKT7 1758 aaPredicted RBP35.16■■■■□ 3.22
CHMP4B-201ENST00000217402 RGPD4Q7Z3J3 1758 aa35.16■■■■□ 3.22
CHMP4B-201ENST00000217402 EIF2S2P20042 333 aaKnown RBP35.15■■■■□ 3.22
CHMP4B-201ENST00000217402 HOXB7P09629 217 aa35.14■■■■□ 3.22
CHMP4B-201ENST00000217402 PROM2Q8N271 834 aa35.14■■■■□ 3.22
CHMP4B-201ENST00000217402 LRRC4BQ9NT99 713 aa35.14■■■■□ 3.22
CHMP4B-201ENST00000217402 ZNF831Q5JPB2 1677 aa35.14■■■■□ 3.22
CHMP4B-201ENST00000217402 VAMP4O75379 141 aa35.14■■■■□ 3.22
CHMP4B-201ENST00000217402 EZH2Q15910 746 aaKnown RBP35.14■■■■□ 3.22
CHMP4B-201ENST00000217402 SLC27A3Q5K4L6 730 aa35.14■■■■□ 3.22
CHMP4B-201ENST00000217402 LAMB4A4D0S4 1761 aa35.13■■■■□ 3.22
CHMP4B-201ENST00000217402 CICQ96RK0 1608 aaPredicted RBP35.13■■■■□ 3.21
CHMP4B-201ENST00000217402 HDGFL1Q5TGJ6 251 aa35.13■■■■□ 3.21
CHMP4B-201ENST00000217402 CAMKK2Q96RR4 588 aa35.13■■■■□ 3.21
CHMP4B-201ENST00000217402 TEX13AQ9BXU3 409 aaPredicted RBP35.12■■■■□ 3.21
CHMP4B-201ENST00000217402 LINC00116Q8NCU8 138 aa35.11■■■■□ 3.21
CHMP4B-201ENST00000217402 SOS1Q07889 1333 aaPredicted RBP35.11■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms