RNA–Protein interactions for RNA: ENST00000023939.8

RTFDC1-201, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-201ENST00000023939 SIPA1L3O60292 1781 aaPredicted RBP18.04■□□□□ 0.48
RTFDC1-201ENST00000023939 CCT4P50991 539 aaKnown RBP18.03■□□□□ 0.48
RTFDC1-201ENST00000023939 CHRNA2Q15822 529 aa18.03■□□□□ 0.48
RTFDC1-201ENST00000023939 G2E3Q7L622 706 aa18.03■□□□□ 0.48
RTFDC1-201ENST00000023939 GCC1Q96CN9 775 aa18.03■□□□□ 0.48
RTFDC1-201ENST00000023939 ABCA3Q99758 1704 aa18.03■□□□□ 0.48
RTFDC1-201ENST00000023939 HEG1Q9ULI3 1381 aa18.03■□□□□ 0.48
RTFDC1-201ENST00000023939 MEGF6O75095 1541 aa18.03■□□□□ 0.48
RTFDC1-201ENST00000023939 BTBD11A6QL63 1104 aa18.03■□□□□ 0.48
RTFDC1-201ENST00000023939 CSB-PGBD3P0DP91 1061 aa18.03■□□□□ 0.48
RTFDC1-201ENST00000023939 PKD1L3Q7Z443 1732 aa18.02■□□□□ 0.48
RTFDC1-201ENST00000023939 NUCB1Q02818 461 aa18.02■□□□□ 0.48
RTFDC1-201ENST00000023939 FLIIQ13045 1269 aa18.02■□□□□ 0.48
RTFDC1-201ENST00000023939 PXDNLA1KZ92 1463 aa18.02■□□□□ 0.47
RTFDC1-201ENST00000023939 VIRMAQ69YN4 1812 aaKnown RBP18.02■□□□□ 0.47
RTFDC1-201ENST00000023939 SIRT2Q8IXJ6 389 aa18.01■□□□□ 0.47
RTFDC1-201ENST00000023939 WDR17Q8IZU2 1322 aa18.01■□□□□ 0.47
RTFDC1-201ENST00000023939 PHKG2P15735 406 aa18.01■□□□□ 0.47
RTFDC1-201ENST00000023939 HDGFL1Q5TGJ6 251 aa18.01■□□□□ 0.47
RTFDC1-201ENST00000023939 RPAP2Q8IXW5 612 aaPredicted RBP18.01■□□□□ 0.47
RTFDC1-201ENST00000023939 PRDM11Q9NQV5 511 aa18.01■□□□□ 0.47
RTFDC1-201ENST00000023939 ATP10DQ9P241 1426 aa17.99■□□□□ 0.47
RTFDC1-201ENST00000023939 N4BP2Q86UW6 1770 aaPredicted RBP17.99■□□□□ 0.47
RTFDC1-201ENST00000023939 SCN11AQ9UI33 1791 aa17.99■□□□□ 0.47
RTFDC1-201ENST00000023939 COL5A2P05997 1499 aaPredicted RBP17.99■□□□□ 0.47
RTFDC1-201ENST00000023939 MRC1P22897 1456 aa17.99■□□□□ 0.47
RTFDC1-201ENST00000023939 IFNL2Q8IZJ0 200 aa17.99■□□□□ 0.47
RTFDC1-201ENST00000023939 KDM6AO15550 1401 aaPredicted RBP17.99■□□□□ 0.47
RTFDC1-201ENST00000023939 MSH5O43196 834 aa17.98■□□□□ 0.47
RTFDC1-201ENST00000023939 ILDR1Q86SU0 546 aaPredicted RBP17.98■□□□□ 0.47
RTFDC1-201ENST00000023939 ANKRD44Q8N8A2 993 aa17.98■□□□□ 0.47
RTFDC1-201ENST00000023939 C1orf115Q9H7X2 142 aa17.98■□□□□ 0.47
RTFDC1-201ENST00000023939 KCNQ3O43525 872 aa17.98■□□□□ 0.47
RTFDC1-201ENST00000023939 HSP90AB1P08238 724 aaKnown RBP17.98■□□□□ 0.47
RTFDC1-201ENST00000023939 IPO9Q96P70 1041 aaKnown RBP17.98■□□□□ 0.47
RTFDC1-201ENST00000023939 CHD1LQ86WJ1 897 aa17.97■□□□□ 0.47
RTFDC1-201ENST00000023939 FKBP5Q13451 457 aaPredicted RBP17.96■□□□□ 0.47
RTFDC1-201ENST00000023939 DCAF5Q96JK2 942 aa17.96■□□□□ 0.47
RTFDC1-201ENST00000023939 SLC52A2Q9HAB3 445 aa17.96■□□□□ 0.47
RTFDC1-201ENST00000023939 AHDC1Q5TGY3 1603 aaPredicted RBP17.95■□□□□ 0.46
RTFDC1-201ENST00000023939 LTBP4Q8N2S1 1624 aa17.95■□□□□ 0.46
RTFDC1-201ENST00000023939 F6X3S4 739 aa17.95■□□□□ 0.46
RTFDC1-201ENST00000023939 GIGYF1O75420 1035 aaPredicted RBP17.95■□□□□ 0.46
RTFDC1-201ENST00000023939 MEIS3Q99687 375 aa17.95■□□□□ 0.46
RTFDC1-201ENST00000023939 DCTPP1Q9H773 170 aa17.95■□□□□ 0.46
RTFDC1-201ENST00000023939 PARP4Q9UKK3 1724 aaKnown RBP17.95■□□□□ 0.46
RTFDC1-201ENST00000023939 CEP85Q6P2H3 762 aa17.95■□□□□ 0.46
RTFDC1-201ENST00000023939 CARD10Q9BWT7 1032 aa17.95■□□□□ 0.46
RTFDC1-201ENST00000023939 CYP27B1O15528 508 aa17.94■□□□□ 0.46
RTFDC1-201ENST00000023939 NECTIN2Q92692 538 aa17.94■□□□□ 0.46
RTFDC1-201ENST00000023939 SLC4A10Q6U841 1118 aa17.93■□□□□ 0.46
RTFDC1-201ENST00000023939 DBF4Q9UBU7 674 aaPredicted RBP17.93■□□□□ 0.46
RTFDC1-201ENST00000023939 GNAI3P08754 354 aa17.92■□□□□ 0.46
RTFDC1-201ENST00000023939 EIF2S2P20042 333 aaKnown RBP17.92■□□□□ 0.46
RTFDC1-201ENST00000023939 ZNF790Q6PG37 636 aa17.92■□□□□ 0.46
RTFDC1-201ENST00000023939 TOM1L2Q6ZVM7 507 aa17.92■□□□□ 0.46
RTFDC1-201ENST00000023939 CHPF2Q9P2E5 772 aa17.92■□□□□ 0.46
RTFDC1-201ENST00000023939 PHAXQ9H814 394 aaKnown RBP17.91■□□□□ 0.46
RTFDC1-201ENST00000023939 COL22A1Q8NFW1 1626 aaPredicted RBP17.91■□□□□ 0.46
RTFDC1-201ENST00000023939 ROBO1Q9Y6N7 1651 aa17.9■□□□□ 0.46
RTFDC1-201ENST00000023939 PCDH11XQ9BZA7 1347 aa17.9■□□□□ 0.46
RTFDC1-201ENST00000023939 PCDH11YQ9BZA8 1340 aa17.9■□□□□ 0.46
RTFDC1-201ENST00000023939 HMMRO75330 724 aa17.9■□□□□ 0.46
RTFDC1-201ENST00000023939 GNAI2P04899 355 aa17.9■□□□□ 0.46
RTFDC1-201ENST00000023939 ANKRD45Q5TZF3 282 aa17.9■□□□□ 0.46
RTFDC1-201ENST00000023939 LNPKQ9C0E8 428 aa17.9■□□□□ 0.46
RTFDC1-201ENST00000023939 NKX1-1Q15270 411 aaPredicted RBP17.89■□□□□ 0.46
RTFDC1-201ENST00000023939 NPM2Q86SE8 214 aaKnown RBP17.89■□□□□ 0.45
RTFDC1-201ENST00000023939 NFATC2IPQ8NCF5 419 aa17.89■□□□□ 0.45
RTFDC1-201ENST00000023939 ZCRB1Q8TBF4 217 aaKnown RBP17.89■□□□□ 0.45
RTFDC1-201ENST00000023939 DDRGK1Q96HY6 314 aa17.89■□□□□ 0.45
RTFDC1-201ENST00000023939 IL2RBP14784 551 aa17.88■□□□□ 0.45
RTFDC1-201ENST00000023939 HYPKQ9NX55 129 aa17.88■□□□□ 0.45
RTFDC1-201ENST00000023939 DNAAF4Q8WXU2 420 aa17.87■□□□□ 0.45
RTFDC1-201ENST00000023939 DDX21Q9NR30 783 aaKnown RBP eCLIP17.87■□□□□ 0.45
RTFDC1-201ENST00000023939 IBTKQ9P2D0 1353 aaPredicted RBP17.87■□□□□ 0.45
RTFDC1-201ENST00000023939 BMP2KLQ5H9B9 411 aa17.86■□□□□ 0.45
RTFDC1-201ENST00000023939 SRCIN1Q9C0H9 1055 aa17.86■□□□□ 0.45
RTFDC1-201ENST00000023939 USP44Q9H0E7 712 aa17.86■□□□□ 0.45
RTFDC1-201ENST00000023939 NOP58Q9Y2X3 529 aaKnown RBP17.86■□□□□ 0.45
RTFDC1-201ENST00000023939 ADCY9O60503 1353 aa17.86■□□□□ 0.45
RTFDC1-201ENST00000023939 COL14A1Q05707 1796 aaKnown RBP17.86■□□□□ 0.45
RTFDC1-201ENST00000023939 ERVV-2B6SEH9 535 aa17.86■□□□□ 0.45
RTFDC1-201ENST00000023939 BEND3Q5T5X7 828 aa17.86■□□□□ 0.45
RTFDC1-201ENST00000023939 LARP1Q6PKG0 1096 aaKnown RBP17.86■□□□□ 0.45
RTFDC1-201ENST00000023939 EVA1CP58658 441 aa17.85■□□□□ 0.45
RTFDC1-201ENST00000023939 ATP8B2P98198 1209 aa17.85■□□□□ 0.45
RTFDC1-201ENST00000023939 PI4KAP2A4QPH2 592 aa17.84■□□□□ 0.45
RTFDC1-201ENST00000023939 CABP4P57796 275 aa17.84■□□□□ 0.45
RTFDC1-201ENST00000023939 SLC39A6Q13433 755 aa17.84■□□□□ 0.45
RTFDC1-201ENST00000023939 KSR2Q6VAB6 950 aa17.84■□□□□ 0.45
RTFDC1-201ENST00000023939 PI4KAP1Q8N8J0 262 aa17.84■□□□□ 0.45
RTFDC1-201ENST00000023939 ZBTB47Q9UFB7 747 aaPredicted RBP17.84■□□□□ 0.45
RTFDC1-201ENST00000023939 ALDH1L1O75891 902 aa17.84■□□□□ 0.45
RTFDC1-201ENST00000023939 SEC24BO95487 1268 aa17.84■□□□□ 0.45
RTFDC1-201ENST00000023939 SNRPA1P09661 255 aaKnown RBP17.84■□□□□ 0.45
RTFDC1-201ENST00000023939 PDIA6Q15084 440 aa17.84■□□□□ 0.45
RTFDC1-201ENST00000023939 ZNF496Q96IT1 587 aaPredicted RBP17.84■□□□□ 0.45
RTFDC1-201ENST00000023939 SHANK3Q9BYB0 1731 aa17.83■□□□□ 0.45
RTFDC1-201ENST00000023939 C5P01031 1676 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms