Protein–RNA interactions for Protein: Q8VEE1

Lmcd1, LIM and cysteine-rich domains protein 1, mousemouse

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmcd1Q8VEE1 Gm25239-201ENSMUST00000174915 86 ntBASIC43.57■■■■■ 4.57
Lmcd1Q8VEE1 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC40.6■■■■■ 4.09
Lmcd1Q8VEE1 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC40.03■■■■■ 4
Lmcd1Q8VEE1 Gm24109-201ENSMUST00000175489 103 ntBASIC38.08■■■■□ 3.69
Lmcd1Q8VEE1 Gm15042-201ENSMUST00000120212 883 ntBASIC37.42■■■■□ 3.58
Lmcd1Q8VEE1 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC36.95■■■■□ 3.51
Lmcd1Q8VEE1 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC36.88■■■■□ 3.49
Lmcd1Q8VEE1 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC36.61■■■■□ 3.45
Lmcd1Q8VEE1 Gm15045-201ENSMUST00000117359 883 ntBASIC36.45■■■■□ 3.43
Lmcd1Q8VEE1 Gm23366-201ENSMUST00000175022 89 ntBASIC36.35■■■■□ 3.41
Lmcd1Q8VEE1 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC36.28■■■■□ 3.4
Lmcd1Q8VEE1 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35.75■■■■□ 3.31
Lmcd1Q8VEE1 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC35.48■■■■□ 3.27
Lmcd1Q8VEE1 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
Lmcd1Q8VEE1 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
Lmcd1Q8VEE1 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC35.3■■■■□ 3.24
Lmcd1Q8VEE1 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
Lmcd1Q8VEE1 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
Lmcd1Q8VEE1 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC34.77■■■■□ 3.16
Lmcd1Q8VEE1 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC34.76■■■■□ 3.16
Lmcd1Q8VEE1 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
Lmcd1Q8VEE1 Gm25238-201ENSMUST00000174914 89 ntBASIC34.61■■■■□ 3.13
Lmcd1Q8VEE1 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC34■■■■□ 3.03
Lmcd1Q8VEE1 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC33.85■■■■□ 3.01
Lmcd1Q8VEE1 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC33.83■■■■□ 3.01
Lmcd1Q8VEE1 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.58■■■□□ 2.97
Lmcd1Q8VEE1 Gm25262-201ENSMUST00000174934 133 ntBASIC33.57■■■□□ 2.96
Lmcd1Q8VEE1 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC33.54■■■□□ 2.96
Lmcd1Q8VEE1 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
Lmcd1Q8VEE1 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC33.35■■■□□ 2.93
Lmcd1Q8VEE1 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
Lmcd1Q8VEE1 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.92
Lmcd1Q8VEE1 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
Lmcd1Q8VEE1 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC33.2■■■□□ 2.91
Lmcd1Q8VEE1 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC33.05■■■□□ 2.88
Lmcd1Q8VEE1 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC33.05■■■□□ 2.88
Lmcd1Q8VEE1 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
Lmcd1Q8VEE1 Gm26115-201ENSMUST00000175605 87 ntBASIC33.02■■■□□ 2.88
Lmcd1Q8VEE1 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC33.01■■■□□ 2.87
Lmcd1Q8VEE1 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC32.91■■■□□ 2.86
Lmcd1Q8VEE1 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32.81■■■□□ 2.84
Lmcd1Q8VEE1 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
Lmcd1Q8VEE1 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32.76■■■□□ 2.84
Lmcd1Q8VEE1 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
Lmcd1Q8VEE1 Gm27325-201ENSMUST00000175467 74 ntBASIC32.69■■■□□ 2.82
Lmcd1Q8VEE1 Gm8109-201ENSMUST00000194076 746 ntBASIC32.67■■■□□ 2.82
Lmcd1Q8VEE1 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.66■■■□□ 2.82
Lmcd1Q8VEE1 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
Lmcd1Q8VEE1 Rab21-202ENSMUST00000218831 843 ntBASIC32.57■■■□□ 2.8
Lmcd1Q8VEE1 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC32.57■■■□□ 2.8
Lmcd1Q8VEE1 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.52■■■□□ 2.8
Lmcd1Q8VEE1 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC32.43■■■□□ 2.78
Lmcd1Q8VEE1 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
Lmcd1Q8VEE1 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
Lmcd1Q8VEE1 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
Lmcd1Q8VEE1 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Lmcd1Q8VEE1 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC32.08■■■□□ 2.73
Lmcd1Q8VEE1 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC32.08■■■□□ 2.73
Lmcd1Q8VEE1 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
Lmcd1Q8VEE1 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC32.03■■■□□ 2.72
Lmcd1Q8VEE1 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC31.98■■■□□ 2.71
Lmcd1Q8VEE1 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
Lmcd1Q8VEE1 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Lmcd1Q8VEE1 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Lmcd1Q8VEE1 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Lmcd1Q8VEE1 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.69■■■□□ 2.66
Lmcd1Q8VEE1 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31.68■■■□□ 2.66
Lmcd1Q8VEE1 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Lmcd1Q8VEE1 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC31.59■■■□□ 2.65
Lmcd1Q8VEE1 Gm24804-201ENSMUST00000174982 85 ntBASIC31.58■■■□□ 2.65
Lmcd1Q8VEE1 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
Lmcd1Q8VEE1 Gm17082-201ENSMUST00000166043 1091 ntBASIC31.56■■■□□ 2.64
Lmcd1Q8VEE1 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC31.51■■■□□ 2.63
Lmcd1Q8VEE1 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
Lmcd1Q8VEE1 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31.46■■■□□ 2.63
Lmcd1Q8VEE1 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
Lmcd1Q8VEE1 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Lmcd1Q8VEE1 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Lmcd1Q8VEE1 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Lmcd1Q8VEE1 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC31.24■■■□□ 2.59
Lmcd1Q8VEE1 Gm27322-201ENSMUST00000184007 104 ntBASIC31.22■■■□□ 2.59
Lmcd1Q8VEE1 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC31.16■■■□□ 2.58
Lmcd1Q8VEE1 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC31.1■■■□□ 2.57
Lmcd1Q8VEE1 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Lmcd1Q8VEE1 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31.07■■■□□ 2.56
Lmcd1Q8VEE1 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.05■■■□□ 2.56
Lmcd1Q8VEE1 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Lmcd1Q8VEE1 Zfp131-205ENSMUST00000223812 663 ntBASIC31.03■■■□□ 2.56
Lmcd1Q8VEE1 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
Lmcd1Q8VEE1 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.99■■■□□ 2.55
Lmcd1Q8VEE1 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC30.99■■■□□ 2.55
Lmcd1Q8VEE1 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC30.98■■■□□ 2.55
Lmcd1Q8VEE1 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
Lmcd1Q8VEE1 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30.94■■■□□ 2.54
Lmcd1Q8VEE1 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
Lmcd1Q8VEE1 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Lmcd1Q8VEE1 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC30.89■■■□□ 2.54
Lmcd1Q8VEE1 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC30.89■■■□□ 2.54
Lmcd1Q8VEE1 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Lmcd1Q8VEE1 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC30.79■■■□□ 2.52
Retrieved 100 of 76,532 protein–RNA pairs in 7.8 ms