Protein–RNA interactions for Protein: Q5R1B6

Trav8d-2, T cell receptor alpha variable 8D-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-2Q5R1B6 Gm25239-201ENSMUST00000174915 86 ntBASIC39.52■■■■□ 3.92
Trav8d-2Q5R1B6 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC36.71■■■■□ 3.47
Trav8d-2Q5R1B6 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC36.22■■■■□ 3.39
Trav8d-2Q5R1B6 Gm24109-201ENSMUST00000175489 103 ntBASIC34.42■■■■□ 3.1
Trav8d-2Q5R1B6 Gm15042-201ENSMUST00000120212 883 ntBASIC34.21■■■■□ 3.07
Trav8d-2Q5R1B6 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC33.46■■■□□ 2.95
Trav8d-2Q5R1B6 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC33.4■■■□□ 2.94
Trav8d-2Q5R1B6 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
Trav8d-2Q5R1B6 Gm15045-201ENSMUST00000117359 883 ntBASIC33.32■■■□□ 2.92
Trav8d-2Q5R1B6 Gm23366-201ENSMUST00000175022 89 ntBASIC33.02■■■□□ 2.88
Trav8d-2Q5R1B6 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
Trav8d-2Q5R1B6 AC153911.1-202ENSMUST00000218534 1034 ntBASIC32.22■■■□□ 2.75
Trav8d-2Q5R1B6 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31.97■■■□□ 2.71
Trav8d-2Q5R1B6 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Trav8d-2Q5R1B6 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC31.89■■■□□ 2.7
Trav8d-2Q5R1B6 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Trav8d-2Q5R1B6 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
Trav8d-2Q5R1B6 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC31.68■■■□□ 2.66
Trav8d-2Q5R1B6 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Trav8d-2Q5R1B6 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Trav8d-2Q5R1B6 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Trav8d-2Q5R1B6 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.41■■■□□ 2.62
Trav8d-2Q5R1B6 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Trav8d-2Q5R1B6 Gm25238-201ENSMUST00000174914 89 ntBASIC31.28■■■□□ 2.6
Trav8d-2Q5R1B6 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
Trav8d-2Q5R1B6 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Trav8d-2Q5R1B6 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC30.76■■■□□ 2.52
Trav8d-2Q5R1B6 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC30.75■■■□□ 2.51
Trav8d-2Q5R1B6 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Trav8d-2Q5R1B6 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC30.67■■■□□ 2.5
Trav8d-2Q5R1B6 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
Trav8d-2Q5R1B6 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Trav8d-2Q5R1B6 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC30.47■■■□□ 2.47
Trav8d-2Q5R1B6 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.43■■■□□ 2.46
Trav8d-2Q5R1B6 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.34■■■□□ 2.45
Trav8d-2Q5R1B6 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
Trav8d-2Q5R1B6 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC30.33■■■□□ 2.45
Trav8d-2Q5R1B6 Gm25262-201ENSMUST00000174934 133 ntBASIC30.24■■■□□ 2.43
Trav8d-2Q5R1B6 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Trav8d-2Q5R1B6 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC30.17■■■□□ 2.42
Trav8d-2Q5R1B6 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC30.04■■■□□ 2.4
Trav8d-2Q5R1B6 Gm27325-201ENSMUST00000175467 74 ntBASIC29.89■■■□□ 2.38
Trav8d-2Q5R1B6 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Trav8d-2Q5R1B6 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC29.82■■■□□ 2.36
Trav8d-2Q5R1B6 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC29.72■■■□□ 2.35
Trav8d-2Q5R1B6 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
Trav8d-2Q5R1B6 Gm26115-201ENSMUST00000175605 87 ntBASIC29.64■■■□□ 2.34
Trav8d-2Q5R1B6 Rab21-202ENSMUST00000218831 843 ntBASIC29.62■■■□□ 2.33
Trav8d-2Q5R1B6 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC29.59■■■□□ 2.33
Trav8d-2Q5R1B6 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC29.59■■■□□ 2.33
Trav8d-2Q5R1B6 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC29.59■■■□□ 2.33
Trav8d-2Q5R1B6 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC29.54■■■□□ 2.32
Trav8d-2Q5R1B6 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Trav8d-2Q5R1B6 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC29.53■■■□□ 2.32
Trav8d-2Q5R1B6 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC29.48■■■□□ 2.31
Trav8d-2Q5R1B6 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
Trav8d-2Q5R1B6 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
Trav8d-2Q5R1B6 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
Trav8d-2Q5R1B6 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Trav8d-2Q5R1B6 Gm8109-201ENSMUST00000194076 746 ntBASIC29.37■■■□□ 2.29
Trav8d-2Q5R1B6 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
Trav8d-2Q5R1B6 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC29.21■■■□□ 2.27
Trav8d-2Q5R1B6 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC29.16■■■□□ 2.26
Trav8d-2Q5R1B6 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC29.12■■■□□ 2.25
Trav8d-2Q5R1B6 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC29.04■■■□□ 2.24
Trav8d-2Q5R1B6 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29■■■□□ 2.23
Trav8d-2Q5R1B6 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC28.96■■■□□ 2.23
Trav8d-2Q5R1B6 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC28.95■■■□□ 2.22
Trav8d-2Q5R1B6 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Trav8d-2Q5R1B6 Psd-208ENSMUST00000224556 2034 ntBASIC28.93■■■□□ 2.22
Trav8d-2Q5R1B6 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Trav8d-2Q5R1B6 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC28.86■■■□□ 2.21
Trav8d-2Q5R1B6 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
Trav8d-2Q5R1B6 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
Trav8d-2Q5R1B6 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC28.75■■■□□ 2.19
Trav8d-2Q5R1B6 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC28.73■■■□□ 2.19
Trav8d-2Q5R1B6 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
Trav8d-2Q5R1B6 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.68■■■□□ 2.18
Trav8d-2Q5R1B6 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.65■■■□□ 2.18
Trav8d-2Q5R1B6 Gm17082-201ENSMUST00000166043 1091 ntBASIC28.62■■■□□ 2.17
Trav8d-2Q5R1B6 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC28.61■■■□□ 2.17
Trav8d-2Q5R1B6 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Trav8d-2Q5R1B6 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Trav8d-2Q5R1B6 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC28.5■■■□□ 2.15
Trav8d-2Q5R1B6 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC28.46■■■□□ 2.15
Trav8d-2Q5R1B6 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Trav8d-2Q5R1B6 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC28.41■■■□□ 2.14
Trav8d-2Q5R1B6 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
Trav8d-2Q5R1B6 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC28.39■■■□□ 2.14
Trav8d-2Q5R1B6 Gm27322-201ENSMUST00000184007 104 ntBASIC28.39■■■□□ 2.14
Trav8d-2Q5R1B6 Gm24804-201ENSMUST00000174982 85 ntBASIC28.38■■■□□ 2.13
Trav8d-2Q5R1B6 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.37■■■□□ 2.13
Trav8d-2Q5R1B6 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Trav8d-2Q5R1B6 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC28.35■■■□□ 2.13
Trav8d-2Q5R1B6 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
Trav8d-2Q5R1B6 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC28.27■■■□□ 2.12
Trav8d-2Q5R1B6 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC28.22■■■□□ 2.11
Trav8d-2Q5R1B6 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Trav8d-2Q5R1B6 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
Trav8d-2Q5R1B6 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC28.16■■■□□ 2.1
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms