Protein–RNA interactions for Protein: P55066

Ncan, Neurocan core protein, mousemouse

Predictions only

Length 1,268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NcanP55066 Gm25239-201ENSMUST00000174915 86 ntBASIC43.61■■■■■ 4.57
NcanP55066 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC40.65■■■■■ 4.1
NcanP55066 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC39.9■■■■□ 3.98
NcanP55066 Gm24109-201ENSMUST00000175489 103 ntBASIC38.14■■■■□ 3.7
NcanP55066 Gm15042-201ENSMUST00000120212 883 ntBASIC37.43■■■■□ 3.58
NcanP55066 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC36.84■■■■□ 3.49
NcanP55066 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC36.68■■■■□ 3.46
NcanP55066 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC36.6■■■■□ 3.45
NcanP55066 Gm15045-201ENSMUST00000117359 883 ntBASIC36.56■■■■□ 3.44
NcanP55066 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC36.53■■■■□ 3.44
NcanP55066 Gm23366-201ENSMUST00000175022 89 ntBASIC36.25■■■■□ 3.39
NcanP55066 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35.83■■■■□ 3.33
NcanP55066 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC35.55■■■■□ 3.28
NcanP55066 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC35.45■■■■□ 3.27
NcanP55066 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC35.44■■■■□ 3.26
NcanP55066 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
NcanP55066 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
NcanP55066 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
NcanP55066 Gm25238-201ENSMUST00000174914 89 ntBASIC34.67■■■■□ 3.14
NcanP55066 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC34.66■■■■□ 3.14
NcanP55066 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC34.59■■■■□ 3.13
NcanP55066 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
NcanP55066 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
NcanP55066 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
NcanP55066 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC33.81■■■■□ 3
NcanP55066 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC33.79■■■■□ 3
NcanP55066 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.79■■■■□ 3
NcanP55066 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC33.58■■■□□ 2.97
NcanP55066 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC33.55■■■□□ 2.96
NcanP55066 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.54■■■□□ 2.96
NcanP55066 Gm25262-201ENSMUST00000174934 133 ntBASIC33.43■■■□□ 2.94
NcanP55066 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
NcanP55066 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC33.31■■■□□ 2.92
NcanP55066 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC33.3■■■□□ 2.92
NcanP55066 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.24■■■□□ 2.91
NcanP55066 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33.13■■■□□ 2.89
NcanP55066 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC33.09■■■□□ 2.89
NcanP55066 Gm26115-201ENSMUST00000175605 87 ntBASIC33.06■■■□□ 2.88
NcanP55066 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC33.01■■■□□ 2.87
NcanP55066 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC33■■■□□ 2.87
NcanP55066 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
NcanP55066 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC32.94■■■□□ 2.86
NcanP55066 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC32.92■■■□□ 2.86
NcanP55066 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32.91■■■□□ 2.86
NcanP55066 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
NcanP55066 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.84
NcanP55066 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.72■■■□□ 2.83
NcanP55066 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
NcanP55066 Gm27325-201ENSMUST00000175467 74 ntBASIC32.69■■■□□ 2.82
NcanP55066 Gm8109-201ENSMUST00000194076 746 ntBASIC32.68■■■□□ 2.82
NcanP55066 Rab21-202ENSMUST00000218831 843 ntBASIC32.49■■■□□ 2.79
NcanP55066 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
NcanP55066 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC32.48■■■□□ 2.79
NcanP55066 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
NcanP55066 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
NcanP55066 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
NcanP55066 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC32.22■■■□□ 2.75
NcanP55066 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC32.15■■■□□ 2.74
NcanP55066 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC32.12■■■□□ 2.73
NcanP55066 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
NcanP55066 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
NcanP55066 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC31.95■■■□□ 2.71
NcanP55066 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC31.95■■■□□ 2.71
NcanP55066 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
NcanP55066 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
NcanP55066 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC31.81■■■□□ 2.68
NcanP55066 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.8■■■□□ 2.68
NcanP55066 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
NcanP55066 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
NcanP55066 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
NcanP55066 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
NcanP55066 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
NcanP55066 Gm17082-201ENSMUST00000166043 1091 ntBASIC31.54■■■□□ 2.64
NcanP55066 Gm24804-201ENSMUST00000174982 85 ntBASIC31.54■■■□□ 2.64
NcanP55066 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31.5■■■□□ 2.63
NcanP55066 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC31.49■■■□□ 2.63
NcanP55066 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
NcanP55066 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
NcanP55066 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
NcanP55066 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
NcanP55066 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC31.34■■■□□ 2.61
NcanP55066 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
NcanP55066 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC31.21■■■□□ 2.59
NcanP55066 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC31.18■■■□□ 2.58
NcanP55066 Psd-208ENSMUST00000224556 2034 ntBASIC31.14■■■□□ 2.58
NcanP55066 Gm27322-201ENSMUST00000184007 104 ntBASIC31.14■■■□□ 2.58
NcanP55066 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.13■■■□□ 2.57
NcanP55066 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
NcanP55066 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31.1■■■□□ 2.57
NcanP55066 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC31.1■■■□□ 2.57
NcanP55066 Zfp131-205ENSMUST00000223812 663 ntBASIC31.09■■■□□ 2.57
NcanP55066 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC31.08■■■□□ 2.57
NcanP55066 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
NcanP55066 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31.05■■■□□ 2.56
NcanP55066 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC31.04■■■□□ 2.56
NcanP55066 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31.03■■■□□ 2.56
NcanP55066 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31.02■■■□□ 2.56
NcanP55066 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
NcanP55066 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC30.98■■■□□ 2.55
NcanP55066 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms