Protein–RNA interactions for Protein: A0A0B4J1J8

Tcrg-V4, T cell receptor gamma, variable 4 (Fragment), mousemouse

Predictions only

Length 138 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tcrg-V4A0A0B4J1J8 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Tcrg-V4A0A0B4J1J8 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Tcrg-V4A0A0B4J1J8 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Tcrg-V4A0A0B4J1J8 Psd-208ENSMUST00000224556 2034 ntBASIC24.03■■□□□ 1.44
Tcrg-V4A0A0B4J1J8 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
Tcrg-V4A0A0B4J1J8 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Tcrg-V4A0A0B4J1J8 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Tcrg-V4A0A0B4J1J8 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Tcrg-V4A0A0B4J1J8 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Tcrg-V4A0A0B4J1J8 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Tcrg-V4A0A0B4J1J8 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Tcrg-V4A0A0B4J1J8 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
Tcrg-V4A0A0B4J1J8 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Tcrg-V4A0A0B4J1J8 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Tcrg-V4A0A0B4J1J8 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Tcrg-V4A0A0B4J1J8 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
Tcrg-V4A0A0B4J1J8 Gm42596-201ENSMUST00000196305 1958 ntBASIC22.56■■□□□ 1.2
Tcrg-V4A0A0B4J1J8 Gm25239-201ENSMUST00000174915 86 ntBASIC22.49■■□□□ 1.19
Tcrg-V4A0A0B4J1J8 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Tcrg-V4A0A0B4J1J8 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Tcrg-V4A0A0B4J1J8 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Tcrg-V4A0A0B4J1J8 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
Tcrg-V4A0A0B4J1J8 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC22.32■■□□□ 1.16
Tcrg-V4A0A0B4J1J8 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
Tcrg-V4A0A0B4J1J8 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Tcrg-V4A0A0B4J1J8 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Tcrg-V4A0A0B4J1J8 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Tcrg-V4A0A0B4J1J8 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Tcrg-V4A0A0B4J1J8 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC22.11■■□□□ 1.13
Tcrg-V4A0A0B4J1J8 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
Tcrg-V4A0A0B4J1J8 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Tcrg-V4A0A0B4J1J8 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Tcrg-V4A0A0B4J1J8 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21.96■■□□□ 1.11
Tcrg-V4A0A0B4J1J8 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Tcrg-V4A0A0B4J1J8 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Tcrg-V4A0A0B4J1J8 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Tcrg-V4A0A0B4J1J8 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.6■■□□□ 1.05
Tcrg-V4A0A0B4J1J8 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
Tcrg-V4A0A0B4J1J8 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
Tcrg-V4A0A0B4J1J8 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Tcrg-V4A0A0B4J1J8 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.51■■□□□ 1.03
Tcrg-V4A0A0B4J1J8 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Tcrg-V4A0A0B4J1J8 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Tcrg-V4A0A0B4J1J8 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Tcrg-V4A0A0B4J1J8 Zxda-201ENSMUST00000117281 2621 ntBASIC21.36■■□□□ 1.01
Tcrg-V4A0A0B4J1J8 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21.35■■□□□ 1.01
Tcrg-V4A0A0B4J1J8 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Tcrg-V4A0A0B4J1J8 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Tcrg-V4A0A0B4J1J8 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Tcrg-V4A0A0B4J1J8 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Tcrg-V4A0A0B4J1J8 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Tcrg-V4A0A0B4J1J8 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Tcrg-V4A0A0B4J1J8 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Tcrg-V4A0A0B4J1J8 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC21.24■□□□□ 0.99
Tcrg-V4A0A0B4J1J8 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Tcrg-V4A0A0B4J1J8 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Tcrg-V4A0A0B4J1J8 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21.16■□□□□ 0.98
Tcrg-V4A0A0B4J1J8 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Tcrg-V4A0A0B4J1J8 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Tcrg-V4A0A0B4J1J8 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Tcrg-V4A0A0B4J1J8 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Tcrg-V4A0A0B4J1J8 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Tcrg-V4A0A0B4J1J8 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC21■□□□□ 0.95
Tcrg-V4A0A0B4J1J8 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Tcrg-V4A0A0B4J1J8 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Tcrg-V4A0A0B4J1J8 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Tcrg-V4A0A0B4J1J8 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
Tcrg-V4A0A0B4J1J8 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Tcrg-V4A0A0B4J1J8 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Tcrg-V4A0A0B4J1J8 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Tcrg-V4A0A0B4J1J8 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Tcrg-V4A0A0B4J1J8 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Tcrg-V4A0A0B4J1J8 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Tcrg-V4A0A0B4J1J8 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Tcrg-V4A0A0B4J1J8 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Tcrg-V4A0A0B4J1J8 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Tcrg-V4A0A0B4J1J8 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Tcrg-V4A0A0B4J1J8 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Tcrg-V4A0A0B4J1J8 Gm10524-201ENSMUST00000181931 1893 ntBASIC20.65■□□□□ 0.9
Tcrg-V4A0A0B4J1J8 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Tcrg-V4A0A0B4J1J8 Gm15042-201ENSMUST00000120212 883 ntBASIC20.64■□□□□ 0.89
Tcrg-V4A0A0B4J1J8 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Tcrg-V4A0A0B4J1J8 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Tcrg-V4A0A0B4J1J8 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Tcrg-V4A0A0B4J1J8 AC153504.1-201ENSMUST00000218379 2290 ntBASIC20.56■□□□□ 0.88
Tcrg-V4A0A0B4J1J8 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tcrg-V4A0A0B4J1J8 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC20.54■□□□□ 0.88
Tcrg-V4A0A0B4J1J8 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Tcrg-V4A0A0B4J1J8 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Tcrg-V4A0A0B4J1J8 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Tcrg-V4A0A0B4J1J8 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Tcrg-V4A0A0B4J1J8 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC20.48■□□□□ 0.87
Tcrg-V4A0A0B4J1J8 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Tcrg-V4A0A0B4J1J8 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Tcrg-V4A0A0B4J1J8 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Tcrg-V4A0A0B4J1J8 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Tcrg-V4A0A0B4J1J8 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Tcrg-V4A0A0B4J1J8 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Tcrg-V4A0A0B4J1J8 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Tcrg-V4A0A0B4J1J8 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms