Protein–RNA interactions for Protein: Q2QI47

Ush2A, Usherin, mousemouse

Predictions only

Length 5,193 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ush2AQ2QI47 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Ush2AQ2QI47 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Ush2AQ2QI47 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Ush2AQ2QI47 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Ush2AQ2QI47 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Gm27243-201ENSMUST00000183964 521 ntBASIC8.42□□□□□ -1.06
Ush2AQ2QI47 AC093022.1-201ENSMUST00000226949 1072 ntBASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Gm43213-201ENSMUST00000151866 1790 ntBASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Gm9002-201ENSMUST00000178437 499 ntBASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Gm44799-201ENSMUST00000207639 1202 ntBASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Gm23931-201ENSMUST00000103842 109 ntBASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Snora78-201ENSMUST00000158630 128 ntBASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Gm21854-201ENSMUST00000179901 471 ntBASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Gm10154-201ENSMUST00000084445 354 ntBASIC8.42□□□□□ -1.06
Ush2AQ2QI47 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Ush2AQ2QI47 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Gm12134-201ENSMUST00000122109 520 ntBASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 AC140451.2-201ENSMUST00000228030 664 ntBASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Nsd1-205ENSMUST00000224693 852 ntBASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Gm14723-201ENSMUST00000118686 215 ntBASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Ush2AQ2QI47 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC8.4□□□□□ -1.06
Ush2AQ2QI47 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC8.4□□□□□ -1.06
Ush2AQ2QI47 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Ush2AQ2QI47 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Ush2AQ2QI47 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Ush2AQ2QI47 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC8.4□□□□□ -1.06
Ush2AQ2QI47 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.06
Ush2AQ2QI47 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Ush2AQ2QI47 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Ush2AQ2QI47 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms