Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU6-539P-201ENST00000516665 103 ntBASIC-5.47□□□□□ -3.28
CUX1P39880 RNU6-886P-201ENST00000384319 105 ntBASIC-5.48□□□□□ -3.29
CUX1P39880 AL117351.2-201ENST00000513571 157 ntBASIC-5.48□□□□□ -3.29
CUX1P39880 RNU6-871P-201ENST00000516122 100 ntBASIC-5.5□□□□□ -3.29
CUX1P39880 RNY1P5-201ENST00000383890 115 ntBASIC-5.52□□□□□ -3.29
CUX1P39880 MIR4666B-201ENST00000578142 81 ntBASIC-5.52□□□□□ -3.29
CUX1P39880 Y_RNA.506-201ENST00000384494 102 ntBASIC-5.53□□□□□ -3.29
CUX1P39880 Y_RNA.535-201ENST00000384612 99 ntBASIC-5.53□□□□□ -3.29
CUX1P39880 Y_RNA.545-201ENST00000384652 105 ntBASIC-5.53□□□□□ -3.29
CUX1P39880 MIR606-201ENST00000384851 96 ntBASIC-5.53□□□□□ -3.29
CUX1P39880 Y_RNA.261-201ENST00000364631 102 ntBASIC-5.53□□□□□ -3.3
CUX1P39880 RNU6-153P-201ENST00000364422 104 ntBASIC-5.54□□□□□ -3.3
CUX1P39880 RNU6-1056P-201ENST00000383996 107 ntBASIC-5.54□□□□□ -3.3
CUX1P39880 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-5.56□□□□□ -3.3
CUX1P39880 SNORD111B-201ENST00000408587 80 ntBASIC-5.58□□□□□ -3.3
CUX1P39880 AC026407.1-201ENST00000518369 204 ntBASIC-5.58□□□□□ -3.3
CUX1P39880 RNU6-640P-201ENST00000363693 105 ntBASIC-5.59□□□□□ -3.3
CUX1P39880 RNU6-1091P-201ENST00000363945 107 ntBASIC-5.59□□□□□ -3.3
CUX1P39880 Y_RNA.464-201ENST00000384282 110 ntBASIC-5.6□□□□□ -3.31
CUX1P39880 RNU6-738P-201ENST00000384531 106 ntBASIC-5.6□□□□□ -3.31
CUX1P39880 RNU6-1276P-201ENST00000365372 104 ntBASIC-5.61□□□□□ -3.31
CUX1P39880 RNU6-242P-201ENST00000384359 107 ntBASIC-5.61□□□□□ -3.31
CUX1P39880 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-5.63□□□□□ -3.31
CUX1P39880 MIR4503-201ENST00000582187 83 ntBASIC-5.63□□□□□ -3.31
CUX1P39880 RNU6-829P-201ENST00000363700 112 ntBASIC-5.64□□□□□ -3.31
CUX1P39880 RNU6-1212P-201ENST00000517023 104 ntBASIC-5.64□□□□□ -3.31
CUX1P39880 AC008267.6-201ENST00000441664 139 ntBASIC-5.64□□□□□ -3.31
CUX1P39880 MIR548S-201ENST00000581352 82 ntBASIC-5.64□□□□□ -3.31
CUX1P39880 RNU6-388P-201ENST00000517012 105 ntBASIC-5.69□□□□□ -3.32
CUX1P39880 RNU6-389P-201ENST00000517048 105 ntBASIC-5.69□□□□□ -3.32
CUX1P39880 RNY4P19-201ENST00000362530 96 ntBASIC-5.69□□□□□ -3.32
CUX1P39880 RNU6-753P-201ENST00000363926 107 ntBASIC-5.7□□□□□ -3.32
CUX1P39880 RNU6-32P-201ENST00000383948 107 ntBASIC-5.7□□□□□ -3.32
CUX1P39880 RNU6-13P-201ENST00000384248 107 ntBASIC-5.7□□□□□ -3.32
CUX1P39880 RNU6-12P-201ENST00000384604 107 ntBASIC-5.7□□□□□ -3.32
CUX1P39880 RNU6-41P-201ENST00000384741 107 ntBASIC-5.7□□□□□ -3.32
CUX1P39880 MIR3908-201ENST00000579798 126 ntBASIC-5.71□□□□□ -3.32
CUX1P39880 MIR548F3-201ENST00000408509 87 ntBASIC-5.73□□□□□ -3.33
CUX1P39880 RNU6-485P-201ENST00000363475 107 ntBASIC-5.74□□□□□ -3.33
CUX1P39880 Y_RNA.61-201ENST00000362835 102 ntBASIC-5.74□□□□□ -3.33
CUX1P39880 RNU6-471P-201ENST00000383944 106 ntBASIC-5.75□□□□□ -3.33
CUX1P39880 RNU6-463P-201ENST00000384340 107 ntBASIC-5.75□□□□□ -3.33
CUX1P39880 MIR633-201ENST00000384821 98 ntBASIC-5.75□□□□□ -3.33
CUX1P39880 RNU6-49P-201ENST00000384256 107 ntBASIC-5.76□□□□□ -3.33
CUX1P39880 Y_RNA.386-201ENST00000383913 105 ntBASIC-5.77□□□□□ -3.33
CUX1P39880 MIR450A2-201ENST00000385022 100 ntBASIC-5.78□□□□□ -3.33
CUX1P39880 RNU6-930P-201ENST00000390938 100 ntBASIC-5.78□□□□□ -3.33
CUX1P39880 RNU6-1131P-201ENST00000364955 107 ntBASIC-5.79□□□□□ -3.34
CUX1P39880 AL365222.1-201ENST00000614661 98 ntBASIC-5.82□□□□□ -3.34
CUX1P39880 RNU6-894P-201ENST00000517094 105 ntBASIC-5.83□□□□□ -3.34
CUX1P39880 RNU6-1275P-201ENST00000391087 107 ntBASIC-5.86□□□□□ -3.35
CUX1P39880 RNU6-892P-201ENST00000410335 99 ntBASIC-5.87□□□□□ -3.35
CUX1P39880 RNU6-1168P-201ENST00000390831 104 ntBASIC-5.91□□□□□ -3.36
CUX1P39880 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-5.91□□□□□ -3.36
CUX1P39880 MT-TG-201ENST00000387429 68 ntBASIC-5.92□□□□□ -3.36
CUX1P39880 RNU6-820P-201ENST00000384273 107 ntBASIC-5.94□□□□□ -3.36
CUX1P39880 RNU6-147P-201ENST00000383983 107 ntBASIC-5.94□□□□□ -3.36
CUX1P39880 RNU6-327P-201ENST00000516270 127 ntBASIC-6.01□□□□□ -3.37
CUX1P39880 U6.103-201ENST00000637085 61 ntBASIC-6.02□□□□□ -3.37
CUX1P39880 RNU6-936P-201ENST00000384005 107 ntBASIC-6.03□□□□□ -3.37
CUX1P39880 RNY4P30-201ENST00000410216 95 ntBASIC-6.03□□□□□ -3.37
CUX1P39880 RNU6-22P-201ENST00000384355 107 ntBASIC-6.04□□□□□ -3.38
CUX1P39880 AC079150.2-201ENST00000443733 78 ntBASIC-6.05□□□□□ -3.38
CUX1P39880 SNORA26.2-201ENST00000390922 122 ntBASIC-6.09□□□□□ -3.39
CUX1P39880 RNU6-1045P-201ENST00000516321 107 ntBASIC-6.11□□□□□ -3.39
CUX1P39880 RNU6-406P-201ENST00000516470 107 ntBASIC-6.11□□□□□ -3.39
CUX1P39880 RNU6-1117P-201ENST00000384525 104 ntBASIC-6.14□□□□□ -3.39
CUX1P39880 Y_RNA.703-201ENST00000516846 111 ntBASIC-6.14□□□□□ -3.39
CUX1P39880 MIR3133-201ENST00000583157 78 ntBASIC-6.14□□□□□ -3.39
CUX1P39880 RNU6-857P-201ENST00000515893 110 ntBASIC-6.15□□□□□ -3.39
CUX1P39880 RNU6-1154P-201ENST00000391001 104 ntBASIC-6.15□□□□□ -3.39
CUX1P39880 DLEU2_4.2-201ENST00000616613 58 ntBASIC-6.16□□□□□ -3.4
CUX1P39880 RNA5SP89-201ENST00000410300 108 ntBASIC-6.17□□□□□ -3.4
CUX1P39880 MIR3202-2-201ENST00000635980 79 ntBASIC-6.2□□□□□ -3.4
CUX1P39880 MIR1255A-201ENST00000408338 113 ntBASIC-6.2□□□□□ -3.4
CUX1P39880 RNU6-279P-201ENST00000391297 101 ntBASIC-6.21□□□□□ -3.4
CUX1P39880 Y_RNA.81-201ENST00000362997 102 ntBASIC-6.25□□□□□ -3.41
CUX1P39880 RNU6-313P-201ENST00000516317 112 ntBASIC-6.26□□□□□ -3.41
CUX1P39880 MIR4662A-201ENST00000637499 67 ntBASIC-6.28□□□□□ -3.41
CUX1P39880 RNU6-133P-201ENST00000383989 107 ntBASIC-6.32□□□□□ -3.42
CUX1P39880 RNU6-499P-201ENST00000365615 107 ntBASIC-6.35□□□□□ -3.43
CUX1P39880 RNU6-919P-201ENST00000516731 104 ntBASIC-6.36□□□□□ -3.43
CUX1P39880 MIR548T-201ENST00000408369 74 ntBASIC-6.4□□□□□ -3.43
CUX1P39880 Y_RNA.694-201ENST00000516677 117 ntBASIC-6.4□□□□□ -3.43
CUX1P39880 RNU6-573P-201ENST00000383938 106 ntBASIC-6.42□□□□□ -3.44
CUX1P39880 SNORD20-201ENST00000384550 80 ntBASIC-6.44□□□□□ -3.44
CUX1P39880 MIR3671-201ENST00000580455 88 ntBASIC-6.44□□□□□ -3.44
CUX1P39880 Y_RNA.369-201ENST00000365568 117 ntBASIC-6.47□□□□□ -3.45
CUX1P39880 RNU6-215P-201ENST00000365169 102 ntBASIC-6.48□□□□□ -3.45
CUX1P39880 RNU6-614P-201ENST00000384369 107 ntBASIC-6.55□□□□□ -3.46
CUX1P39880 MIR5582-201ENST00000579697 68 ntBASIC-6.55□□□□□ -3.46
CUX1P39880 U6.59-201ENST00000615686 107 ntBASIC-6.55□□□□□ -3.46
CUX1P39880 AC125388.1-201ENST00000459631 156 ntBASIC-6.55□□□□□ -3.46
CUX1P39880 RNU6-44P-201ENST00000384045 107 ntBASIC-6.57□□□□□ -3.46
CUX1P39880 RNA5SP225-201ENST00000410874 135 ntBASIC-6.57□□□□□ -3.46
CUX1P39880 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-6.64□□□□□ -3.47
CUX1P39880 SNORD78.1-201ENST00000390866 65 ntBASIC-6.65□□□□□ -3.47
CUX1P39880 RNU6-1011P-201ENST00000384668 107 ntBASIC-6.7□□□□□ -3.48
CUX1P39880 RNU6-724P-201ENST00000390958 105 ntBASIC-6.71□□□□□ -3.48
CUX1P39880 SNORD73B-201ENST00000364394 72 ntBASIC-6.72□□□□□ -3.49
Retrieved 100 of 98,524 protein–RNA pairs in 174.1 ms