Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MIR548AM-201ENST00000584298 74 ntBASIC-2.29□□□□□ -2.78
CHMP1AQ9HD42 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-2.29□□□□□ -2.78
CHMP1AQ9HD42 MIR198-201ENST00000637333 62 ntBASIC-2.3□□□□□ -2.78
CHMP1AQ9HD42 MIR4426-201ENST00000640330 63 ntBASIC-2.31□□□□□ -2.78
CHMP1AQ9HD42 RNU6-446P-201ENST00000362827 106 ntBASIC-2.32□□□□□ -2.78
CHMP1AQ9HD42 RNU6-638P-201ENST00000516582 104 ntBASIC-2.32□□□□□ -2.78
CHMP1AQ9HD42 SNX3P1X-201ENST00000414887 175 ntBASIC-2.34□□□□□ -2.78
CHMP1AQ9HD42 RNA5SP461-201ENST00000516451 104 ntBASIC-2.35□□□□□ -2.79
CHMP1AQ9HD42 MIR548X-201ENST00000580069 75 ntBASIC-2.36□□□□□ -2.79
CHMP1AQ9HD42 RNA5SP180-201ENST00000516181 101 ntBASIC-2.38□□□□□ -2.79
CHMP1AQ9HD42 RNA5SP331-201ENST00000364986 107 ntBASIC-2.39□□□□□ -2.79
CHMP1AQ9HD42 MIR548W-201ENST00000581970 74 ntBASIC-2.39□□□□□ -2.79
CHMP1AQ9HD42 RNU6-1312P-201ENST00000362425 108 ntBASIC-2.4□□□□□ -2.79
CHMP1AQ9HD42 RNU6-300P-201ENST00000459080 104 ntBASIC-2.4□□□□□ -2.79
CHMP1AQ9HD42 snoU13.10-201ENST00000459301 103 ntBASIC-2.4□□□□□ -2.79
CHMP1AQ9HD42 SNORD18.1-201ENST00000363807 70 ntBASIC-2.41□□□□□ -2.8
CHMP1AQ9HD42 RNU6-742P-201ENST00000365289 107 ntBASIC-2.41□□□□□ -2.8
CHMP1AQ9HD42 Y_RNA.502-201ENST00000384478 113 ntBASIC-2.41□□□□□ -2.8
CHMP1AQ9HD42 AC108019.1-201ENST00000512540 175 ntBASIC-2.41□□□□□ -2.8
CHMP1AQ9HD42 Y_RNA.232-201ENST00000364369 96 ntBASIC-2.42□□□□□ -2.8
CHMP1AQ9HD42 RNU6-590P-201ENST00000365039 107 ntBASIC-2.42□□□□□ -2.8
CHMP1AQ9HD42 MIR601-201ENST00000385256 79 ntBASIC-2.42□□□□□ -2.8
CHMP1AQ9HD42 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-2.42□□□□□ -2.8
CHMP1AQ9HD42 RNU6-176P-201ENST00000517196 105 ntBASIC-2.43□□□□□ -2.8
CHMP1AQ9HD42 RNU6-68P-201ENST00000516576 104 ntBASIC-2.45□□□□□ -2.8
CHMP1AQ9HD42 MIR1246-201ENST00000636535 73 ntBASIC-2.45□□□□□ -2.8
CHMP1AQ9HD42 SNORD113-4-201ENST00000364802 75 ntBASIC-2.47□□□□□ -2.8
CHMP1AQ9HD42 MIR633-201ENST00000384821 98 ntBASIC-2.47□□□□□ -2.8
CHMP1AQ9HD42 RNU4-88P-201ENST00000411220 86 ntBASIC-2.47□□□□□ -2.8
CHMP1AQ9HD42 Y_RNA.722-201ENST00000517279 114 ntBASIC-2.47□□□□□ -2.8
CHMP1AQ9HD42 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.47□□□□□ -2.8
CHMP1AQ9HD42 MIR379-201ENST00000362218 67 ntBASIC-2.49□□□□□ -2.81
CHMP1AQ9HD42 Y_RNA.181-201ENST00000363872 101 ntBASIC-2.49□□□□□ -2.81
CHMP1AQ9HD42 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.49□□□□□ -2.81
CHMP1AQ9HD42 Y_RNA.442-201ENST00000384131 102 ntBASIC-2.49□□□□□ -2.81
CHMP1AQ9HD42 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.5□□□□□ -2.81
CHMP1AQ9HD42 RNU6-829P-201ENST00000363700 112 ntBASIC-2.5□□□□□ -2.81
CHMP1AQ9HD42 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-2.5□□□□□ -2.81
CHMP1AQ9HD42 MIR1285-2-201ENST00000408311 88 ntBASIC-2.5□□□□□ -2.81
CHMP1AQ9HD42 AC125388.1-201ENST00000459631 156 ntBASIC-2.5□□□□□ -2.81
CHMP1AQ9HD42 MIR4756-201ENST00000577874 78 ntBASIC-2.51□□□□□ -2.81
CHMP1AQ9HD42 Y_RNA.349-201ENST00000365406 102 ntBASIC-2.54□□□□□ -2.82
CHMP1AQ9HD42 RNU6-983P-201ENST00000516004 103 ntBASIC-2.54□□□□□ -2.82
CHMP1AQ9HD42 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.55□□□□□ -2.82
CHMP1AQ9HD42 MIR365A-201ENST00000362260 87 ntBASIC-2.57□□□□□ -2.82
CHMP1AQ9HD42 RNU6-912P-201ENST00000363800 104 ntBASIC-2.57□□□□□ -2.82
CHMP1AQ9HD42 RNU6-980P-201ENST00000516925 103 ntBASIC-2.57□□□□□ -2.82
CHMP1AQ9HD42 MIR4441-201ENST00000582623 100 ntBASIC-2.58□□□□□ -2.82
CHMP1AQ9HD42 AC139453.2-201ENST00000487255 133 ntBASIC-2.59□□□□□ -2.82
CHMP1AQ9HD42 MIR664B-201ENST00000626756 61 ntBASIC-2.59□□□□□ -2.82
CHMP1AQ9HD42 RNU6-1324P-201ENST00000384222 107 ntBASIC-2.6□□□□□ -2.83
CHMP1AQ9HD42 AC097484.2-201ENST00000509147 251 ntBASIC-2.6□□□□□ -2.83
CHMP1AQ9HD42 AL627230.5-201ENST00000619807 58 ntBASIC-2.6□□□□□ -2.83
CHMP1AQ9HD42 RNU4-33P-201ENST00000364316 85 ntBASIC-2.61□□□□□ -2.83
CHMP1AQ9HD42 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.61□□□□□ -2.83
CHMP1AQ9HD42 AC079150.2-201ENST00000443733 78 ntBASIC-2.62□□□□□ -2.83
CHMP1AQ9HD42 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.62□□□□□ -2.83
CHMP1AQ9HD42 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.62□□□□□ -2.83
CHMP1AQ9HD42 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.64□□□□□ -2.83
CHMP1AQ9HD42 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.66□□□□□ -2.84
CHMP1AQ9HD42 Y_RNA.647-201ENST00000459194 112 ntBASIC-2.67□□□□□ -2.84
CHMP1AQ9HD42 Y_RNA.640-201ENST00000459296 112 ntBASIC-2.67□□□□□ -2.84
CHMP1AQ9HD42 Y_RNA.803-201ENST00000614432 112 ntBASIC-2.67□□□□□ -2.84
CHMP1AQ9HD42 Y_RNA.815-201ENST00000616655 112 ntBASIC-2.67□□□□□ -2.84
CHMP1AQ9HD42 Y_RNA.795-201ENST00000619475 112 ntBASIC-2.67□□□□□ -2.84
CHMP1AQ9HD42 Y_RNA.827-201ENST00000638104 112 ntBASIC-2.67□□□□□ -2.84
CHMP1AQ9HD42 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.68□□□□□ -2.84
CHMP1AQ9HD42 SNORD113-3-201ENST00000364830 72 ntBASIC-2.69□□□□□ -2.84
CHMP1AQ9HD42 Y_RNA.413-201ENST00000384007 102 ntBASIC-2.69□□□□□ -2.84
CHMP1AQ9HD42 Y_RNA.754-201ENST00000476024 102 ntBASIC-2.69□□□□□ -2.84
CHMP1AQ9HD42 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.69□□□□□ -2.84
CHMP1AQ9HD42 Y_RNA.790-201ENST00000614282 102 ntBASIC-2.69□□□□□ -2.84
CHMP1AQ9HD42 Y_RNA.782-201ENST00000614695 102 ntBASIC-2.69□□□□□ -2.84
CHMP1AQ9HD42 Y_RNA.543-201ENST00000384649 107 ntBASIC-2.7□□□□□ -2.84
CHMP1AQ9HD42 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.72□□□□□ -2.84
CHMP1AQ9HD42 FTX_4.1-201ENST00000616291 147 ntBASIC-2.72□□□□□ -2.84
CHMP1AQ9HD42 MIR548AL-201ENST00000578416 97 ntBASIC-2.73□□□□□ -2.85
CHMP1AQ9HD42 RNU6-499P-201ENST00000365615 107 ntBASIC-2.74□□□□□ -2.85
CHMP1AQ9HD42 Y_RNA.616-201ENST00000410835 95 ntBASIC-2.74□□□□□ -2.85
CHMP1AQ9HD42 U4.2-201ENST00000618561 85 ntBASIC-2.75□□□□□ -2.85
CHMP1AQ9HD42 MIR4317-201ENST00000637586 65 ntBASIC-2.75□□□□□ -2.85
CHMP1AQ9HD42 RNU6-118P-201ENST00000516552 102 ntBASIC-2.77□□□□□ -2.85
CHMP1AQ9HD42 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.78□□□□□ -2.85
CHMP1AQ9HD42 MIR4748-201ENST00000578076 82 ntBASIC-2.78□□□□□ -2.85
CHMP1AQ9HD42 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2.79□□□□□ -2.86
CHMP1AQ9HD42 MIR548H4-201ENST00000408689 111 ntBASIC-2.8□□□□□ -2.86
CHMP1AQ9HD42 SNORD114-3-201ENST00000364969 75 ntBASIC-2.81□□□□□ -2.86
CHMP1AQ9HD42 Y_RNA.434-201ENST00000384090 100 ntBASIC-2.81□□□□□ -2.86
CHMP1AQ9HD42 MIR1254-1-201ENST00000408257 97 ntBASIC-2.81□□□□□ -2.86
CHMP1AQ9HD42 RNA5SP405-201ENST00000363059 114 ntBASIC-2.83□□□□□ -2.86
CHMP1AQ9HD42 RNU6-194P-201ENST00000363862 105 ntBASIC-2.83□□□□□ -2.86
CHMP1AQ9HD42 RNU6-822P-201ENST00000362707 106 ntBASIC-2.84□□□□□ -2.86
CHMP1AQ9HD42 Y_RNA.382-201ENST00000365672 114 ntBASIC-2.84□□□□□ -2.86
CHMP1AQ9HD42 RNU6-345P-201ENST00000517001 107 ntBASIC-2.86□□□□□ -2.87
CHMP1AQ9HD42 Y_RNA.55-201ENST00000362797 102 ntBASIC-2.87□□□□□ -2.87
CHMP1AQ9HD42 RNU6-1169P-201ENST00000363537 103 ntBASIC-2.88□□□□□ -2.87
CHMP1AQ9HD42 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.88□□□□□ -2.87
CHMP1AQ9HD42 MIRLET7A2-201ENST00000362105 72 ntBASIC-2.89□□□□□ -2.87
CHMP1AQ9HD42 RNU6-1204P-201ENST00000363948 107 ntBASIC-2.89□□□□□ -2.87
CHMP1AQ9HD42 RNU6-838P-201ENST00000363399 108 ntBASIC-2.9□□□□□ -2.87
Retrieved 100 of 98,524 protein–RNA pairs in 172 ms