Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 RNU6-828P-201ENST00000364876 107 ntBASIC-0.56□□□□□ -2.5
NKX2-4Q9H2Z4 RNU6-499P-201ENST00000365615 107 ntBASIC-0.56□□□□□ -2.5
NKX2-4Q9H2Z4 MIR581-201ENST00000384895 96 ntBASIC-0.56□□□□□ -2.5
NKX2-4Q9H2Z4 RNU6-1312P-201ENST00000362425 108 ntBASIC-0.57□□□□□ -2.5
NKX2-4Q9H2Z4 MIR601-201ENST00000385256 79 ntBASIC-0.57□□□□□ -2.5
NKX2-4Q9H2Z4 RNU6-980P-201ENST00000516925 103 ntBASIC-0.57□□□□□ -2.5
NKX2-4Q9H2Z4 MIR3165-201ENST00000579874 75 ntBASIC-0.57□□□□□ -2.5
NKX2-4Q9H2Z4 MIR548W-201ENST00000581970 74 ntBASIC-0.57□□□□□ -2.5
NKX2-4Q9H2Z4 MIR198-201ENST00000637333 62 ntBASIC-0.57□□□□□ -2.5
NKX2-4Q9H2Z4 RNU6-576P-201ENST00000390854 102 ntBASIC-0.58□□□□□ -2.5
NKX2-4Q9H2Z4 MIR548H1-201ENST00000408610 102 ntBASIC-0.58□□□□□ -2.5
NKX2-4Q9H2Z4 AC018880.2-201ENST00000414265 201 ntBASIC-0.58□□□□□ -2.5
NKX2-4Q9H2Z4 AC079150.2-201ENST00000443733 78 ntBASIC-0.58□□□□□ -2.5
NKX2-4Q9H2Z4 AL451105.1-201ENST00000450005 189 ntBASIC-0.58□□□□□ -2.5
NKX2-4Q9H2Z4 MIR23C-201ENST00000579846 100 ntBASIC-0.58□□□□□ -2.5
NKX2-4Q9H2Z4 MIRLET7A2-201ENST00000362105 72 ntBASIC-0.59□□□□□ -2.5
NKX2-4Q9H2Z4 Y_RNA.284-201ENST00000364806 102 ntBASIC-0.59□□□□□ -2.5
NKX2-4Q9H2Z4 RNU4-88P-201ENST00000411220 86 ntBASIC-0.59□□□□□ -2.5
NKX2-4Q9H2Z4 MIR548X-201ENST00000580069 75 ntBASIC-0.59□□□□□ -2.5
NKX2-4Q9H2Z4 MIR664B-201ENST00000626756 61 ntBASIC-0.59□□□□□ -2.5
NKX2-4Q9H2Z4 Y_RNA.175-201ENST00000363794 111 ntBASIC-0.6□□□□□ -2.51
NKX2-4Q9H2Z4 RNU6-361P-201ENST00000364454 107 ntBASIC-0.6□□□□□ -2.51
NKX2-4Q9H2Z4 Y_RNA.321-201ENST00000365149 102 ntBASIC-0.6□□□□□ -2.51
NKX2-4Q9H2Z4 MIR496-201ENST00000385226 102 ntBASIC-0.6□□□□□ -2.51
NKX2-4Q9H2Z4 MIR3139-201ENST00000579145 76 ntBASIC-0.6□□□□□ -2.51
NKX2-4Q9H2Z4 U4.2-201ENST00000618561 85 ntBASIC-0.6□□□□□ -2.51
NKX2-4Q9H2Z4 RNU6-742P-201ENST00000365289 107 ntBASIC-0.61□□□□□ -2.51
NKX2-4Q9H2Z4 Y_RNA.543-201ENST00000384649 107 ntBASIC-0.61□□□□□ -2.51
NKX2-4Q9H2Z4 MIR1285-2-201ENST00000408311 88 ntBASIC-0.61□□□□□ -2.51
NKX2-4Q9H2Z4 RNU6-118P-201ENST00000516552 102 ntBASIC-0.61□□□□□ -2.51
NKX2-4Q9H2Z4 Y_RNA.722-201ENST00000517279 114 ntBASIC-0.61□□□□□ -2.51
NKX2-4Q9H2Z4 MIR3123-201ENST00000583417 75 ntBASIC-0.61□□□□□ -2.51
NKX2-4Q9H2Z4 RNU6-530P-201ENST00000391180 107 ntBASIC-0.62□□□□□ -2.51
NKX2-4Q9H2Z4 MIR548N-201ENST00000408742 75 ntBASIC-0.62□□□□□ -2.51
NKX2-4Q9H2Z4 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-0.62□□□□□ -2.51
NKX2-4Q9H2Z4 RNU6-68P-201ENST00000516576 104 ntBASIC-0.62□□□□□ -2.51
NKX2-4Q9H2Z4 MIR548AM-201ENST00000584298 74 ntBASIC-0.62□□□□□ -2.51
NKX2-4Q9H2Z4 Y_RNA.781-201ENST00000620301 103 ntBASIC-0.62□□□□□ -2.51
NKX2-4Q9H2Z4 MIR202-201ENST00000362219 110 ntBASIC-0.63□□□□□ -2.51
NKX2-4Q9H2Z4 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.63□□□□□ -2.51
NKX2-4Q9H2Z4 RNA5SP405-201ENST00000363059 114 ntBASIC-0.63□□□□□ -2.51
NKX2-4Q9H2Z4 snoU13.10-201ENST00000459301 103 ntBASIC-0.63□□□□□ -2.51
NKX2-4Q9H2Z4 U6.97-201ENST00000636904 101 ntBASIC-0.63□□□□□ -2.51
NKX2-4Q9H2Z4 RNY4P27-201ENST00000363341 96 ntBASIC-0.64□□□□□ -2.51
NKX2-4Q9H2Z4 Y_RNA.223-201ENST00000364290 113 ntBASIC-0.64□□□□□ -2.51
NKX2-4Q9H2Z4 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-0.64□□□□□ -2.51
NKX2-4Q9H2Z4 RNU6-695P-201ENST00000391157 104 ntBASIC-0.64□□□□□ -2.51
NKX2-4Q9H2Z4 MIR4441-201ENST00000582623 100 ntBASIC-0.64□□□□□ -2.51
NKX2-4Q9H2Z4 Y_RNA.225-201ENST00000364326 97 ntBASIC-0.65□□□□□ -2.51
NKX2-4Q9H2Z4 RNU6-400P-201ENST00000391173 106 ntBASIC-0.65□□□□□ -2.51
NKX2-4Q9H2Z4 SNORA17.4-201ENST00000391287 132 ntBASIC-0.65□□□□□ -2.51
NKX2-4Q9H2Z4 Y_RNA.502-201ENST00000384478 113 ntBASIC-0.66□□□□□ -2.52
NKX2-4Q9H2Z4 MIR365A-201ENST00000362260 87 ntBASIC-0.67□□□□□ -2.52
NKX2-4Q9H2Z4 RNU4-33P-201ENST00000364316 85 ntBASIC-0.67□□□□□ -2.52
NKX2-4Q9H2Z4 RNU6-841P-201ENST00000383872 107 ntBASIC-0.67□□□□□ -2.52
NKX2-4Q9H2Z4 Y_RNA.591-201ENST00000410228 104 ntBASIC-0.67□□□□□ -2.52
NKX2-4Q9H2Z4 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-0.67□□□□□ -2.52
NKX2-4Q9H2Z4 RNA5SP93-201ENST00000362525 114 ntBASIC-0.68□□□□□ -2.52
NKX2-4Q9H2Z4 RNU6-1047P-201ENST00000364418 107 ntBASIC-0.68□□□□□ -2.52
NKX2-4Q9H2Z4 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.68□□□□□ -2.52
NKX2-4Q9H2Z4 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.68□□□□□ -2.52
NKX2-4Q9H2Z4 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.68□□□□□ -2.52
NKX2-4Q9H2Z4 MIR4748-201ENST00000578076 82 ntBASIC-0.68□□□□□ -2.52
NKX2-4Q9H2Z4 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-0.68□□□□□ -2.52
NKX2-4Q9H2Z4 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.68□□□□□ -2.52
NKX2-4Q9H2Z4 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.68□□□□□ -2.52
NKX2-4Q9H2Z4 MIR4426-201ENST00000640330 63 ntBASIC-0.68□□□□□ -2.52
NKX2-4Q9H2Z4 SNORD45.2-201ENST00000363552 72 ntBASIC-0.69□□□□□ -2.52
NKX2-4Q9H2Z4 SNORD60-201ENST00000383903 83 ntBASIC-0.69□□□□□ -2.52
NKX2-4Q9H2Z4 MT-TM-201ENST00000387377 68 ntBASIC-0.69□□□□□ -2.52
NKX2-4Q9H2Z4 MIR548H4-201ENST00000408689 111 ntBASIC-0.69□□□□□ -2.52
NKX2-4Q9H2Z4 Y_RNA.684-201ENST00000516510 99 ntBASIC-0.69□□□□□ -2.52
NKX2-4Q9H2Z4 SNORD18C-201ENST00000362704 69 ntBASIC-0.7□□□□□ -2.52
NKX2-4Q9H2Z4 RNU6-141P-201ENST00000410499 105 ntBASIC-0.7□□□□□ -2.52
NKX2-4Q9H2Z4 RNU6-1247P-201ENST00000516622 98 ntBASIC-0.7□□□□□ -2.52
NKX2-4Q9H2Z4 SNORD19B.1-201ENST00000630615 80 ntBASIC-0.7□□□□□ -2.52
NKX2-4Q9H2Z4 SNORD113-3-201ENST00000364830 72 ntBASIC-0.71□□□□□ -2.52
NKX2-4Q9H2Z4 MIR1207-201ENST00000408249 87 ntBASIC-0.71□□□□□ -2.52
NKX2-4Q9H2Z4 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-0.71□□□□□ -2.52
NKX2-4Q9H2Z4 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-0.72□□□□□ -2.52
NKX2-4Q9H2Z4 RNU6-300P-201ENST00000459080 104 ntBASIC-0.73□□□□□ -2.53
NKX2-4Q9H2Z4 VTRNA2-1-201ENST00000602301 127 ntBASIC-0.73□□□□□ -2.53
NKX2-4Q9H2Z4 TARS-215ENST00000626210 201 ntTSL 5 BASIC-0.73□□□□□ -2.53
NKX2-4Q9H2Z4 RNU6-1034P-201ENST00000365335 101 ntBASIC-0.74□□□□□ -2.53
NKX2-4Q9H2Z4 RNU6-1324P-201ENST00000384222 107 ntBASIC-0.74□□□□□ -2.53
NKX2-4Q9H2Z4 MIR548AJ2-201ENST00000408539 92 ntBASIC-0.74□□□□□ -2.53
NKX2-4Q9H2Z4 MIR548AL-201ENST00000578416 97 ntBASIC-0.74□□□□□ -2.53
NKX2-4Q9H2Z4 RNU6-912P-201ENST00000363800 104 ntBASIC-0.75□□□□□ -2.53
NKX2-4Q9H2Z4 RNU6-194P-201ENST00000363862 105 ntBASIC-0.75□□□□□ -2.53
NKX2-4Q9H2Z4 RNU6-838P-201ENST00000363399 108 ntBASIC-0.76□□□□□ -2.53
NKX2-4Q9H2Z4 RNU6-753P-201ENST00000363926 107 ntBASIC-0.76□□□□□ -2.53
NKX2-4Q9H2Z4 RNU6-1277P-201ENST00000364561 107 ntBASIC-0.76□□□□□ -2.53
NKX2-4Q9H2Z4 Y_RNA.320-201ENST00000365144 102 ntBASIC-0.76□□□□□ -2.53
NKX2-4Q9H2Z4 Y_RNA.349-201ENST00000365406 102 ntBASIC-0.76□□□□□ -2.53
NKX2-4Q9H2Z4 RNU6-936P-201ENST00000384005 107 ntBASIC-0.76□□□□□ -2.53
NKX2-4Q9H2Z4 Y_RNA.434-201ENST00000384090 100 ntBASIC-0.76□□□□□ -2.53
NKX2-4Q9H2Z4 Y_RNA.475-201ENST00000384345 101 ntBASIC-0.76□□□□□ -2.53
NKX2-4Q9H2Z4 RNU6-176P-201ENST00000517196 105 ntBASIC-0.76□□□□□ -2.53
NKX2-4Q9H2Z4 Y_RNA.63-201ENST00000362841 102 ntBASIC-0.77□□□□□ -2.53
NKX2-4Q9H2Z4 RNU6-1306P-201ENST00000365219 99 ntBASIC-0.77□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 165.8 ms