Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MIR1207-201ENST00000408249 87 ntBASIC-1.52□□□□□ -2.65
USP41Q3LFD5 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.52□□□□□ -2.65
USP41Q3LFD5 RNY4P27-201ENST00000363341 96 ntBASIC-1.53□□□□□ -2.65
USP41Q3LFD5 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.53□□□□□ -2.65
USP41Q3LFD5 RNU6-446P-201ENST00000362827 106 ntBASIC-1.54□□□□□ -2.66
USP41Q3LFD5 MIR487B-201ENST00000385021 84 ntBASIC-1.54□□□□□ -2.66
USP41Q3LFD5 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.55□□□□□ -2.66
USP41Q3LFD5 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.55□□□□□ -2.66
USP41Q3LFD5 U6.97-201ENST00000636904 101 ntBASIC-1.55□□□□□ -2.66
USP41Q3LFD5 MIR202-201ENST00000362219 110 ntBASIC-1.56□□□□□ -2.66
USP41Q3LFD5 AL451105.1-201ENST00000450005 189 ntBASIC-1.56□□□□□ -2.66
USP41Q3LFD5 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.57□□□□□ -2.66
USP41Q3LFD5 SNORD18.1-201ENST00000363807 70 ntBASIC-1.57□□□□□ -2.66
USP41Q3LFD5 RNU6-695P-201ENST00000391157 104 ntBASIC-1.57□□□□□ -2.66
USP41Q3LFD5 MIR581-201ENST00000384895 96 ntBASIC-1.58□□□□□ -2.66
USP41Q3LFD5 RNU6-530P-201ENST00000391180 107 ntBASIC-1.58□□□□□ -2.66
USP41Q3LFD5 RNU6-419P-201ENST00000517030 63 ntBASIC-1.58□□□□□ -2.66
USP41Q3LFD5 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.59□□□□□ -2.66
USP41Q3LFD5 AC108019.1-201ENST00000512540 175 ntBASIC-1.61□□□□□ -2.67
USP41Q3LFD5 RNU6-361P-201ENST00000364454 107 ntBASIC-1.63□□□□□ -2.67
USP41Q3LFD5 RNU6-983P-201ENST00000516004 103 ntBASIC-1.63□□□□□ -2.67
USP41Q3LFD5 MIR3123-201ENST00000583417 75 ntBASIC-1.63□□□□□ -2.67
USP41Q3LFD5 RNU6-841P-201ENST00000383872 107 ntBASIC-1.64□□□□□ -2.67
USP41Q3LFD5 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.64□□□□□ -2.67
USP41Q3LFD5 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.64□□□□□ -2.67
USP41Q3LFD5 MIR548N-201ENST00000408742 75 ntBASIC-1.64□□□□□ -2.67
USP41Q3LFD5 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.65□□□□□ -2.67
USP41Q3LFD5 SNORD113-4-201ENST00000364802 75 ntBASIC-1.65□□□□□ -2.67
USP41Q3LFD5 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.65□□□□□ -2.67
USP41Q3LFD5 SNORA17.4-201ENST00000391287 132 ntBASIC-1.65□□□□□ -2.67
USP41Q3LFD5 SNORD60-201ENST00000383903 83 ntBASIC-1.67□□□□□ -2.68
USP41Q3LFD5 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.67□□□□□ -2.68
USP41Q3LFD5 MIR633-201ENST00000384821 98 ntBASIC-1.67□□□□□ -2.68
USP41Q3LFD5 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.67□□□□□ -2.68
USP41Q3LFD5 MIR4756-201ENST00000577874 78 ntBASIC-1.67□□□□□ -2.68
USP41Q3LFD5 MIR548AM-201ENST00000584298 74 ntBASIC-1.67□□□□□ -2.68
USP41Q3LFD5 RNU6-590P-201ENST00000365039 107 ntBASIC-1.68□□□□□ -2.68
USP41Q3LFD5 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.68□□□□□ -2.68
USP41Q3LFD5 SNORD45.2-201ENST00000363552 72 ntBASIC-1.69□□□□□ -2.68
USP41Q3LFD5 RNU6-829P-201ENST00000363700 112 ntBASIC-1.69□□□□□ -2.68
USP41Q3LFD5 MIR548X-201ENST00000580069 75 ntBASIC-1.69□□□□□ -2.68
USP41Q3LFD5 MIR664B-201ENST00000626756 61 ntBASIC-1.69□□□□□ -2.68
USP41Q3LFD5 MIR4426-201ENST00000640330 63 ntBASIC-1.69□□□□□ -2.68
USP41Q3LFD5 RNU6-742P-201ENST00000365289 107 ntBASIC-1.7□□□□□ -2.68
USP41Q3LFD5 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.7□□□□□ -2.68
USP41Q3LFD5 SNORD18C-201ENST00000362704 69 ntBASIC-1.71□□□□□ -2.68
USP41Q3LFD5 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.75□□□□□ -2.69
USP41Q3LFD5 RNU4-88P-201ENST00000411220 86 ntBASIC-1.75□□□□□ -2.69
USP41Q3LFD5 AC125388.1-201ENST00000459631 156 ntBASIC-1.75□□□□□ -2.69
USP41Q3LFD5 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.76□□□□□ -2.69
USP41Q3LFD5 RNU6-68P-201ENST00000516576 104 ntBASIC-1.76□□□□□ -2.69
USP41Q3LFD5 RNU6-980P-201ENST00000516925 103 ntBASIC-1.76□□□□□ -2.69
USP41Q3LFD5 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.76□□□□□ -2.69
USP41Q3LFD5 AC139453.2-201ENST00000487255 133 ntBASIC-1.77□□□□□ -2.69
USP41Q3LFD5 MIR548W-201ENST00000581970 74 ntBASIC-1.77□□□□□ -2.69
USP41Q3LFD5 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.79□□□□□ -2.7
USP41Q3LFD5 RNU6-300P-201ENST00000459080 104 ntBASIC-1.79□□□□□ -2.7
USP41Q3LFD5 snoU13.10-201ENST00000459301 103 ntBASIC-1.79□□□□□ -2.7
USP41Q3LFD5 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.79□□□□□ -2.7
USP41Q3LFD5 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.79□□□□□ -2.7
USP41Q3LFD5 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.8□□□□□ -2.7
USP41Q3LFD5 AC079150.2-201ENST00000443733 78 ntBASIC-1.8□□□□□ -2.7
USP41Q3LFD5 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.82□□□□□ -2.7
USP41Q3LFD5 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.82□□□□□ -2.7
USP41Q3LFD5 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.82□□□□□ -2.7
USP41Q3LFD5 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.82□□□□□ -2.7
USP41Q3LFD5 MIR496-201ENST00000385226 102 ntBASIC-1.83□□□□□ -2.7
USP41Q3LFD5 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.83□□□□□ -2.7
USP41Q3LFD5 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.84□□□□□ -2.7
USP41Q3LFD5 RNU6-119P-201ENST00000364882 107 ntBASIC-1.84□□□□□ -2.7
USP41Q3LFD5 RNA5SP405-201ENST00000363059 114 ntBASIC-1.86□□□□□ -2.71
USP41Q3LFD5 RNU4-33P-201ENST00000364316 85 ntBASIC-1.86□□□□□ -2.71
USP41Q3LFD5 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.87□□□□□ -2.71
USP41Q3LFD5 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.88□□□□□ -2.71
USP41Q3LFD5 RNU6-176P-201ENST00000517196 105 ntBASIC-1.88□□□□□ -2.71
USP41Q3LFD5 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.89□□□□□ -2.71
USP41Q3LFD5 RNU6-912P-201ENST00000363800 104 ntBASIC-1.9□□□□□ -2.71
USP41Q3LFD5 RNU6-194P-201ENST00000363862 105 ntBASIC-1.9□□□□□ -2.71
USP41Q3LFD5 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.9□□□□□ -2.71
USP41Q3LFD5 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.91□□□□□ -2.72
USP41Q3LFD5 RNU6-499P-201ENST00000365615 107 ntBASIC-1.91□□□□□ -2.72
USP41Q3LFD5 RNU6-118P-201ENST00000516552 102 ntBASIC-1.91□□□□□ -2.72
USP41Q3LFD5 MIR379-201ENST00000362218 67 ntBASIC-1.92□□□□□ -2.72
USP41Q3LFD5 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.92□□□□□ -2.72
USP41Q3LFD5 MIR4748-201ENST00000578076 82 ntBASIC-1.92□□□□□ -2.72
USP41Q3LFD5 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.93□□□□□ -2.72
USP41Q3LFD5 AC097484.2-201ENST00000509147 251 ntBASIC-1.94□□□□□ -2.72
USP41Q3LFD5 FTX_4.1-201ENST00000616291 147 ntBASIC-1.96□□□□□ -2.72
USP41Q3LFD5 MIR3139-201ENST00000579145 76 ntBASIC-1.97□□□□□ -2.72
USP41Q3LFD5 MIR548H4-201ENST00000408689 111 ntBASIC-1.98□□□□□ -2.73
USP41Q3LFD5 MIR548AL-201ENST00000578416 97 ntBASIC-1.98□□□□□ -2.73
USP41Q3LFD5 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.98□□□□□ -2.73
USP41Q3LFD5 SNORD113-3-201ENST00000364830 72 ntBASIC-2□□□□□ -2.73
USP41Q3LFD5 Y_RNA.501-201ENST00000384467 103 ntBASIC-2□□□□□ -2.73
USP41Q3LFD5 Y_RNA.647-201ENST00000459194 112 ntBASIC-2□□□□□ -2.73
USP41Q3LFD5 Y_RNA.640-201ENST00000459296 112 ntBASIC-2□□□□□ -2.73
USP41Q3LFD5 Y_RNA.803-201ENST00000614432 112 ntBASIC-2□□□□□ -2.73
USP41Q3LFD5 Y_RNA.815-201ENST00000616655 112 ntBASIC-2□□□□□ -2.73
USP41Q3LFD5 Y_RNA.795-201ENST00000619475 112 ntBASIC-2□□□□□ -2.73
USP41Q3LFD5 Y_RNA.827-201ENST00000638104 112 ntBASIC-2□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 258.3 ms