Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.01□□□□□ -2.57
COL28A1Q2UY09 RNU6-118P-201ENST00000516552 102 ntBASIC-1.01□□□□□ -2.57
COL28A1Q2UY09 MIR664B-201ENST00000626756 61 ntBASIC-1.01□□□□□ -2.57
COL28A1Q2UY09 SNORA27.2-201ENST00000363365 126 ntBASIC-1.02□□□□□ -2.57
COL28A1Q2UY09 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.02□□□□□ -2.57
COL28A1Q2UY09 RNU7-119P-201ENST00000459279 63 ntBASIC-1.02□□□□□ -2.57
COL28A1Q2UY09 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.03□□□□□ -2.57
COL28A1Q2UY09 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.03□□□□□ -2.57
COL28A1Q2UY09 RNU6-841P-201ENST00000383872 107 ntBASIC-1.03□□□□□ -2.57
COL28A1Q2UY09 RNU6-471P-201ENST00000383944 106 ntBASIC-1.03□□□□□ -2.57
COL28A1Q2UY09 SNORA40B-201ENST00000385573 128 ntBASIC-1.03□□□□□ -2.57
COL28A1Q2UY09 RNU6-638P-201ENST00000516582 104 ntBASIC-1.03□□□□□ -2.57
COL28A1Q2UY09 RNU6-980P-201ENST00000516925 103 ntBASIC-1.03□□□□□ -2.57
COL28A1Q2UY09 MIR466-201ENST00000580653 84 ntBASIC-1.03□□□□□ -2.57
COL28A1Q2UY09 MIR548AM-201ENST00000584298 74 ntBASIC-1.03□□□□□ -2.57
COL28A1Q2UY09 RNU6-828P-201ENST00000364876 107 ntBASIC-1.04□□□□□ -2.58
COL28A1Q2UY09 RNU6-974P-201ENST00000384099 108 ntBASIC-1.04□□□□□ -2.58
COL28A1Q2UY09 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.04□□□□□ -2.58
COL28A1Q2UY09 SNORA40.16-201ENST00000517238 121 ntBASIC-1.04□□□□□ -2.58
COL28A1Q2UY09 MIR3938-201ENST00000582157 103 ntBASIC-1.04□□□□□ -2.58
COL28A1Q2UY09 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.04□□□□□ -2.58
COL28A1Q2UY09 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.05□□□□□ -2.58
COL28A1Q2UY09 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.05□□□□□ -2.58
COL28A1Q2UY09 MIR496-201ENST00000385226 102 ntBASIC-1.05□□□□□ -2.58
COL28A1Q2UY09 RNU4-88P-201ENST00000411220 86 ntBASIC-1.05□□□□□ -2.58
COL28A1Q2UY09 AC013734.1-201ENST00000619329 111 ntBASIC-1.05□□□□□ -2.58
COL28A1Q2UY09 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.05□□□□□ -2.58
COL28A1Q2UY09 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.06□□□□□ -2.58
COL28A1Q2UY09 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.06□□□□□ -2.58
COL28A1Q2UY09 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.07□□□□□ -2.58
COL28A1Q2UY09 RNU6-520P-201ENST00000384717 104 ntBASIC-1.07□□□□□ -2.58
COL28A1Q2UY09 MIR3139-201ENST00000579145 76 ntBASIC-1.07□□□□□ -2.58
COL28A1Q2UY09 RNY4P7-201ENST00000364600 96 ntBASIC-1.08□□□□□ -2.58
COL28A1Q2UY09 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.08□□□□□ -2.58
COL28A1Q2UY09 U6.97-201ENST00000636904 101 ntBASIC-1.08□□□□□ -2.58
COL28A1Q2UY09 RNA5SP405-201ENST00000363059 114 ntBASIC-1.09□□□□□ -2.58
COL28A1Q2UY09 MIR548W-201ENST00000581970 74 ntBASIC-1.09□□□□□ -2.58
COL28A1Q2UY09 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.09□□□□□ -2.58
COL28A1Q2UY09 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.1□□□□□ -2.59
COL28A1Q2UY09 RNY3P8-201ENST00000411366 126 ntBASIC-1.1□□□□□ -2.59
COL28A1Q2UY09 snoU13.10-201ENST00000459301 103 ntBASIC-1.1□□□□□ -2.59
COL28A1Q2UY09 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.11□□□□□ -2.59
COL28A1Q2UY09 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.11□□□□□ -2.59
COL28A1Q2UY09 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.11□□□□□ -2.59
COL28A1Q2UY09 RNU6-194P-201ENST00000363862 105 ntBASIC-1.12□□□□□ -2.59
COL28A1Q2UY09 MT-TM-201ENST00000387377 68 ntBASIC-1.12□□□□□ -2.59
COL28A1Q2UY09 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.12□□□□□ -2.59
COL28A1Q2UY09 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.13□□□□□ -2.59
COL28A1Q2UY09 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.16□□□□□ -2.6
COL28A1Q2UY09 MIR581-201ENST00000384895 96 ntBASIC-1.16□□□□□ -2.6
COL28A1Q2UY09 RNU6-119P-201ENST00000364882 107 ntBASIC-1.17□□□□□ -2.6
COL28A1Q2UY09 AL451105.1-201ENST00000450005 189 ntBASIC-1.17□□□□□ -2.6
COL28A1Q2UY09 RNU6-590P-201ENST00000365039 107 ntBASIC-1.18□□□□□ -2.6
COL28A1Q2UY09 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.18□□□□□ -2.6
COL28A1Q2UY09 RNU6-419P-201ENST00000517030 63 ntBASIC-1.18□□□□□ -2.6
COL28A1Q2UY09 RNA5SP93-201ENST00000362525 114 ntBASIC-1.19□□□□□ -2.6
COL28A1Q2UY09 SNORD45.2-201ENST00000363552 72 ntBASIC-1.19□□□□□ -2.6
COL28A1Q2UY09 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.2□□□□□ -2.6
COL28A1Q2UY09 RNU6-446P-201ENST00000362827 106 ntBASIC-1.2□□□□□ -2.6
COL28A1Q2UY09 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.2□□□□□ -2.6
COL28A1Q2UY09 MIR4748-201ENST00000578076 82 ntBASIC-1.2□□□□□ -2.6
COL28A1Q2UY09 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.2□□□□□ -2.6
COL28A1Q2UY09 MIR202-201ENST00000362219 110 ntBASIC-1.21□□□□□ -2.6
COL28A1Q2UY09 RNU6-361P-201ENST00000364454 107 ntBASIC-1.21□□□□□ -2.6
COL28A1Q2UY09 SNORD18C-201ENST00000362704 69 ntBASIC-1.22□□□□□ -2.6
COL28A1Q2UY09 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.22□□□□□ -2.6
COL28A1Q2UY09 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.22□□□□□ -2.6
COL28A1Q2UY09 RNU6-530P-201ENST00000391180 107 ntBASIC-1.22□□□□□ -2.6
COL28A1Q2UY09 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.22□□□□□ -2.6
COL28A1Q2UY09 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.22□□□□□ -2.6
COL28A1Q2UY09 AC097484.2-201ENST00000509147 251 ntBASIC-1.22□□□□□ -2.6
COL28A1Q2UY09 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.22□□□□□ -2.6
COL28A1Q2UY09 FTX_4.1-201ENST00000616291 147 ntBASIC-1.22□□□□□ -2.6
COL28A1Q2UY09 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.22□□□□□ -2.6
COL28A1Q2UY09 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.22□□□□□ -2.6
COL28A1Q2UY09 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.22□□□□□ -2.6
COL28A1Q2UY09 SNORD113-3-201ENST00000364830 72 ntBASIC-1.23□□□□□ -2.61
COL28A1Q2UY09 SNORD60-201ENST00000383903 83 ntBASIC-1.23□□□□□ -2.61
COL28A1Q2UY09 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.23□□□□□ -2.61
COL28A1Q2UY09 SNORD54-201ENST00000459159 67 ntBASIC-1.23□□□□□ -2.61
COL28A1Q2UY09 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.24□□□□□ -2.61
COL28A1Q2UY09 SNORA17.4-201ENST00000391287 132 ntBASIC-1.24□□□□□ -2.61
COL28A1Q2UY09 AC125388.1-201ENST00000459631 156 ntBASIC-1.24□□□□□ -2.61
COL28A1Q2UY09 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.25□□□□□ -2.61
COL28A1Q2UY09 MIR548N-201ENST00000408742 75 ntBASIC-1.25□□□□□ -2.61
COL28A1Q2UY09 RNU6-141P-201ENST00000410499 105 ntBASIC-1.25□□□□□ -2.61
COL28A1Q2UY09 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.26□□□□□ -2.61
COL28A1Q2UY09 MIR548X-201ENST00000580069 75 ntBASIC-1.26□□□□□ -2.61
COL28A1Q2UY09 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.27□□□□□ -2.61
COL28A1Q2UY09 RNU6-68P-201ENST00000516576 104 ntBASIC-1.27□□□□□ -2.61
COL28A1Q2UY09 RNU6-829P-201ENST00000363700 112 ntBASIC-1.28□□□□□ -2.61
COL28A1Q2UY09 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.28□□□□□ -2.61
COL28A1Q2UY09 MIR633-201ENST00000384821 98 ntBASIC-1.28□□□□□ -2.61
COL28A1Q2UY09 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.29□□□□□ -2.62
COL28A1Q2UY09 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.29□□□□□ -2.62
COL28A1Q2UY09 MIR4426-201ENST00000640330 63 ntBASIC-1.29□□□□□ -2.62
COL28A1Q2UY09 RNY4P9-201ENST00000363194 97 ntBASIC-1.3□□□□□ -2.62
COL28A1Q2UY09 RNU6-912P-201ENST00000363800 104 ntBASIC-1.3□□□□□ -2.62
COL28A1Q2UY09 SNORD113-4-201ENST00000364802 75 ntBASIC-1.3□□□□□ -2.62
COL28A1Q2UY09 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.3□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 173.5 ms