Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.29□□□□□ -2.62
HDAC4P56524 SNORA40.16-201ENST00000517238 121 ntBASIC-1.29□□□□□ -2.62
HDAC4P56524 RNU6-520P-201ENST00000384717 104 ntBASIC-1.3□□□□□ -2.62
HDAC4P56524 RNU6-695P-201ENST00000391157 104 ntBASIC-1.32□□□□□ -2.62
HDAC4P56524 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.33□□□□□ -2.62
HDAC4P56524 RNY3P8-201ENST00000411366 126 ntBASIC-1.33□□□□□ -2.62
HDAC4P56524 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.33□□□□□ -2.62
HDAC4P56524 RNU6-119P-201ENST00000364882 107 ntBASIC-1.34□□□□□ -2.62
HDAC4P56524 AC013734.1-201ENST00000619329 111 ntBASIC-1.34□□□□□ -2.62
HDAC4P56524 RNY4P7-201ENST00000364600 96 ntBASIC-1.35□□□□□ -2.63
HDAC4P56524 RNA5SP86-201ENST00000390869 98 ntBASIC-1.35□□□□□ -2.63
HDAC4P56524 RNU6-983P-201ENST00000516004 103 ntBASIC-1.35□□□□□ -2.63
HDAC4P56524 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.38□□□□□ -2.63
HDAC4P56524 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.39□□□□□ -2.63
HDAC4P56524 AL451105.1-201ENST00000450005 189 ntBASIC-1.39□□□□□ -2.63
HDAC4P56524 RNU6-361P-201ENST00000364454 107 ntBASIC-1.4□□□□□ -2.63
HDAC4P56524 MIR3123-201ENST00000583417 75 ntBASIC-1.4□□□□□ -2.63
HDAC4P56524 RNU6-590P-201ENST00000365039 107 ntBASIC-1.41□□□□□ -2.64
HDAC4P56524 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.41□□□□□ -2.64
HDAC4P56524 RNU6-841P-201ENST00000383872 107 ntBASIC-1.41□□□□□ -2.64
HDAC4P56524 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.41□□□□□ -2.64
HDAC4P56524 SNORD45.2-201ENST00000363552 72 ntBASIC-1.42□□□□□ -2.64
HDAC4P56524 MIR548H1-201ENST00000408610 102 ntBASIC-1.42□□□□□ -2.64
HDAC4P56524 MIR548N-201ENST00000408742 75 ntBASIC-1.42□□□□□ -2.64
HDAC4P56524 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.42□□□□□ -2.64
HDAC4P56524 SNORD18C-201ENST00000362704 69 ntBASIC-1.43□□□□□ -2.64
HDAC4P56524 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.43□□□□□ -2.64
HDAC4P56524 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.43□□□□□ -2.64
HDAC4P56524 SNORD60-201ENST00000383903 83 ntBASIC-1.43□□□□□ -2.64
HDAC4P56524 RNU6-419P-201ENST00000517030 63 ntBASIC-1.43□□□□□ -2.64
HDAC4P56524 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.44□□□□□ -2.64
HDAC4P56524 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.44□□□□□ -2.64
HDAC4P56524 U6.97-201ENST00000636904 101 ntBASIC-1.44□□□□□ -2.64
HDAC4P56524 MIR202-201ENST00000362219 110 ntBASIC-1.45□□□□□ -2.64
HDAC4P56524 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.45□□□□□ -2.64
HDAC4P56524 SNORA17.4-201ENST00000391287 132 ntBASIC-1.45□□□□□ -2.64
HDAC4P56524 MIR581-201ENST00000384895 96 ntBASIC-1.46□□□□□ -2.64
HDAC4P56524 RNU6-530P-201ENST00000391180 107 ntBASIC-1.46□□□□□ -2.64
HDAC4P56524 MIR487B-201ENST00000385021 84 ntBASIC-1.48□□□□□ -2.65
HDAC4P56524 MIR548AM-201ENST00000584298 74 ntBASIC-1.48□□□□□ -2.65
HDAC4P56524 RNU6-446P-201ENST00000362827 106 ntBASIC-1.49□□□□□ -2.65
HDAC4P56524 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.49□□□□□ -2.65
HDAC4P56524 AC125388.1-201ENST00000459631 156 ntBASIC-1.49□□□□□ -2.65
HDAC4P56524 RNA5SP93-201ENST00000362525 114 ntBASIC-1.5□□□□□ -2.65
HDAC4P56524 SNORD18.1-201ENST00000363807 70 ntBASIC-1.51□□□□□ -2.65
HDAC4P56524 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.51□□□□□ -2.65
HDAC4P56524 SNORD54-201ENST00000459159 67 ntBASIC-1.51□□□□□ -2.65
HDAC4P56524 RNU6-118P-201ENST00000516552 102 ntBASIC-1.51□□□□□ -2.65
HDAC4P56524 MIR4426-201ENST00000640330 63 ntBASIC-1.51□□□□□ -2.65
HDAC4P56524 MIR548X-201ENST00000580069 75 ntBASIC-1.52□□□□□ -2.65
HDAC4P56524 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.54□□□□□ -2.66
HDAC4P56524 RNY4-201ENST00000516507 96 ntBASIC-1.55□□□□□ -2.66
HDAC4P56524 RNU6-176P-201ENST00000517196 105 ntBASIC-1.55□□□□□ -2.66
HDAC4P56524 MIR548W-201ENST00000581970 74 ntBASIC-1.56□□□□□ -2.66
HDAC4P56524 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.57□□□□□ -2.66
HDAC4P56524 AC108019.1-201ENST00000512540 175 ntBASIC-1.57□□□□□ -2.66
HDAC4P56524 RNU6-68P-201ENST00000516576 104 ntBASIC-1.57□□□□□ -2.66
HDAC4P56524 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.58□□□□□ -2.66
HDAC4P56524 RNU6-300P-201ENST00000459080 104 ntBASIC-1.58□□□□□ -2.66
HDAC4P56524 RNU6-980P-201ENST00000516925 103 ntBASIC-1.58□□□□□ -2.66
HDAC4P56524 MIR379-201ENST00000362218 67 ntBASIC-1.59□□□□□ -2.66
HDAC4P56524 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.59□□□□□ -2.66
HDAC4P56524 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.59□□□□□ -2.66
HDAC4P56524 RNU6-742P-201ENST00000365289 107 ntBASIC-1.59□□□□□ -2.66
HDAC4P56524 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.59□□□□□ -2.66
HDAC4P56524 snoU13.10-201ENST00000459301 103 ntBASIC-1.59□□□□□ -2.66
HDAC4P56524 AC139453.2-201ENST00000487255 133 ntBASIC-1.59□□□□□ -2.66
HDAC4P56524 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.59□□□□□ -2.66
HDAC4P56524 RNU6-829P-201ENST00000363700 112 ntBASIC-1.6□□□□□ -2.67
HDAC4P56524 MIR633-201ENST00000384821 98 ntBASIC-1.6□□□□□ -2.67
HDAC4P56524 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.6□□□□□ -2.67
HDAC4P56524 SNORD113-4-201ENST00000364802 75 ntBASIC-1.62□□□□□ -2.67
HDAC4P56524 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.62□□□□□ -2.67
HDAC4P56524 MIR4756-201ENST00000577874 78 ntBASIC-1.62□□□□□ -2.67
HDAC4P56524 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.63□□□□□ -2.67
HDAC4P56524 RNU4-88P-201ENST00000411220 86 ntBASIC-1.63□□□□□ -2.67
HDAC4P56524 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.64□□□□□ -2.67
HDAC4P56524 MIR664B-201ENST00000626756 61 ntBASIC-1.65□□□□□ -2.67
HDAC4P56524 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.67□□□□□ -2.68
HDAC4P56524 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.67□□□□□ -2.68
HDAC4P56524 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.67□□□□□ -2.68
HDAC4P56524 AC079150.2-201ENST00000443733 78 ntBASIC-1.68□□□□□ -2.68
HDAC4P56524 AC097484.2-201ENST00000509147 251 ntBASIC-1.69□□□□□ -2.68
HDAC4P56524 RNU4-33P-201ENST00000364316 85 ntBASIC-1.7□□□□□ -2.68
HDAC4P56524 RNU6-912P-201ENST00000363800 104 ntBASIC-1.71□□□□□ -2.68
HDAC4P56524 RNU6-499P-201ENST00000365615 107 ntBASIC-1.71□□□□□ -2.68
HDAC4P56524 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.71□□□□□ -2.68
HDAC4P56524 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.72□□□□□ -2.68
HDAC4P56524 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.72□□□□□ -2.68
HDAC4P56524 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.72□□□□□ -2.68
HDAC4P56524 MIR3139-201ENST00000579145 76 ntBASIC-1.72□□□□□ -2.68
HDAC4P56524 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.73□□□□□ -2.69
HDAC4P56524 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.74□□□□□ -2.69
HDAC4P56524 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.74□□□□□ -2.69
HDAC4P56524 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.74□□□□□ -2.69
HDAC4P56524 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.74□□□□□ -2.69
HDAC4P56524 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.74□□□□□ -2.69
HDAC4P56524 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.74□□□□□ -2.69
HDAC4P56524 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.75□□□□□ -2.69
HDAC4P56524 FTX_4.1-201ENST00000616291 147 ntBASIC-1.75□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 220.6 ms