Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC108019.1-201ENST00000512540 175 ntBASIC-0.74□□□□□ -2.53
HOXA1P49639 RNU6-980P-201ENST00000516925 103 ntBASIC-0.74□□□□□ -2.53
HOXA1P49639 Y_RNA.781-201ENST00000620301 103 ntBASIC-0.74□□□□□ -2.53
HOXA1P49639 RNU6-1034P-201ENST00000365335 101 ntBASIC-0.75□□□□□ -2.53
HOXA1P49639 Y_RNA.442-201ENST00000384131 102 ntBASIC-0.75□□□□□ -2.53
HOXA1P49639 RNU6-1008P-201ENST00000384160 104 ntBASIC-0.75□□□□□ -2.53
HOXA1P49639 MIR548AJ2-201ENST00000408539 92 ntBASIC-0.75□□□□□ -2.53
HOXA1P49639 AC139453.2-201ENST00000487255 133 ntBASIC-0.75□□□□□ -2.53
HOXA1P49639 MIR548X-201ENST00000580069 75 ntBASIC-0.75□□□□□ -2.53
HOXA1P49639 MIR548AM-201ENST00000584298 74 ntBASIC-0.75□□□□□ -2.53
HOXA1P49639 AC138207.3-201ENST00000585289 166 ntBASIC-0.75□□□□□ -2.53
HOXA1P49639 SNORD19B.1-201ENST00000630615 80 ntBASIC-0.75□□□□□ -2.53
HOXA1P49639 SNORD113-3-201ENST00000364830 72 ntBASIC-0.76□□□□□ -2.53
HOXA1P49639 MIR548H4-201ENST00000408689 111 ntBASIC-0.76□□□□□ -2.53
HOXA1P49639 RNU4-88P-201ENST00000411220 86 ntBASIC-0.76□□□□□ -2.53
HOXA1P49639 MIR23C-201ENST00000579846 100 ntBASIC-0.76□□□□□ -2.53
HOXA1P49639 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-0.76□□□□□ -2.53
HOXA1P49639 RNU6-912P-201ENST00000363800 104 ntBASIC-0.77□□□□□ -2.53
HOXA1P49639 RNU6-841P-201ENST00000383872 107 ntBASIC-0.77□□□□□ -2.53
HOXA1P49639 RNU6-1324P-201ENST00000384222 107 ntBASIC-0.77□□□□□ -2.53
HOXA1P49639 MIR4770-201ENST00000579149 58 ntBASIC-0.77□□□□□ -2.53
HOXA1P49639 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-0.78□□□□□ -2.53
HOXA1P49639 SNORD18C-201ENST00000362704 69 ntBASIC-0.79□□□□□ -2.54
HOXA1P49639 SNORD18.1-201ENST00000363807 70 ntBASIC-0.79□□□□□ -2.54
HOXA1P49639 Y_RNA.284-201ENST00000364806 102 ntBASIC-0.79□□□□□ -2.54
HOXA1P49639 RNU6-590P-201ENST00000365039 107 ntBASIC-0.79□□□□□ -2.54
HOXA1P49639 SNORD60-201ENST00000383903 83 ntBASIC-0.79□□□□□ -2.54
HOXA1P49639 RNU6-300P-201ENST00000459080 104 ntBASIC-0.79□□□□□ -2.54
HOXA1P49639 MIR3165-201ENST00000579874 75 ntBASIC-0.79□□□□□ -2.54
HOXA1P49639 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.79□□□□□ -2.54
HOXA1P49639 MIR409-201ENST00000362237 79 ntBASIC-0.8□□□□□ -2.54
HOXA1P49639 RNU6-1169P-201ENST00000363537 103 ntBASIC-0.8□□□□□ -2.54
HOXA1P49639 Y_RNA.211-201ENST00000364164 101 ntBASIC-0.8□□□□□ -2.54
HOXA1P49639 Y_RNA.349-201ENST00000365406 102 ntBASIC-0.8□□□□□ -2.54
HOXA1P49639 MIR1254-1-201ENST00000408257 97 ntBASIC-0.8□□□□□ -2.54
HOXA1P49639 RNU6-986P-201ENST00000363133 102 ntBASIC-0.81□□□□□ -2.54
HOXA1P49639 RNU4-33P-201ENST00000364316 85 ntBASIC-0.81□□□□□ -2.54
HOXA1P49639 Y_RNA.434-201ENST00000384090 100 ntBASIC-0.81□□□□□ -2.54
HOXA1P49639 MIR587-201ENST00000384845 96 ntBASIC-0.81□□□□□ -2.54
HOXA1P49639 AC125388.1-201ENST00000459631 156 ntBASIC-0.81□□□□□ -2.54
HOXA1P49639 Y_RNA.379-201ENST00000365653 102 ntBASIC-0.83□□□□□ -2.54
HOXA1P49639 Y_RNA.564-201ENST00000384708 106 ntBASIC-0.83□□□□□ -2.54
HOXA1P49639 MIR1246-201ENST00000636535 73 ntBASIC-0.83□□□□□ -2.54
HOXA1P49639 Y_RNA.502-201ENST00000384478 113 ntBASIC-0.84□□□□□ -2.54
HOXA1P49639 Y_RNA.722-201ENST00000517279 114 ntBASIC-0.84□□□□□ -2.54
HOXA1P49639 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-0.84□□□□□ -2.54
HOXA1P49639 MIR664B-201ENST00000626756 61 ntBASIC-0.84□□□□□ -2.54
HOXA1P49639 Y_RNA.63-201ENST00000362841 102 ntBASIC-0.85□□□□□ -2.55
HOXA1P49639 RNU6-936P-201ENST00000384005 107 ntBASIC-0.85□□□□□ -2.55
HOXA1P49639 RNA5SP266-201ENST00000410273 108 ntBASIC-0.85□□□□□ -2.55
HOXA1P49639 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-0.85□□□□□ -2.55
HOXA1P49639 RNU6-499P-201ENST00000365615 107 ntBASIC-0.86□□□□□ -2.55
HOXA1P49639 Y_RNA.382-201ENST00000365672 114 ntBASIC-0.86□□□□□ -2.55
HOXA1P49639 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.86□□□□□ -2.55
HOXA1P49639 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-0.86□□□□□ -2.55
HOXA1P49639 Y_RNA.591-201ENST00000410228 104 ntBASIC-0.86□□□□□ -2.55
HOXA1P49639 MIR548AL-201ENST00000578416 97 ntBASIC-0.86□□□□□ -2.55
HOXA1P49639 Y_RNA.232-201ENST00000364369 96 ntBASIC-0.87□□□□□ -2.55
HOXA1P49639 RNU6-983P-201ENST00000516004 103 ntBASIC-0.87□□□□□ -2.55
HOXA1P49639 SNORD45.2-201ENST00000363552 72 ntBASIC-0.88□□□□□ -2.55
HOXA1P49639 RNU6-753P-201ENST00000363926 107 ntBASIC-0.88□□□□□ -2.55
HOXA1P49639 Y_RNA.647-201ENST00000459194 112 ntBASIC-0.88□□□□□ -2.55
HOXA1P49639 Y_RNA.640-201ENST00000459296 112 ntBASIC-0.88□□□□□ -2.55
HOXA1P49639 AC097484.2-201ENST00000509147 251 ntBASIC-0.88□□□□□ -2.55
HOXA1P49639 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-0.88□□□□□ -2.55
HOXA1P49639 Y_RNA.803-201ENST00000614432 112 ntBASIC-0.88□□□□□ -2.55
HOXA1P49639 FTX_4.1-201ENST00000616291 147 ntBASIC-0.88□□□□□ -2.55
HOXA1P49639 Y_RNA.815-201ENST00000616655 112 ntBASIC-0.88□□□□□ -2.55
HOXA1P49639 Y_RNA.795-201ENST00000619475 112 ntBASIC-0.88□□□□□ -2.55
HOXA1P49639 Y_RNA.827-201ENST00000638104 112 ntBASIC-0.88□□□□□ -2.55
HOXA1P49639 RNU6-141P-201ENST00000410499 105 ntBASIC-0.9□□□□□ -2.55
HOXA1P49639 RNU6-118P-201ENST00000516552 102 ntBASIC-0.9□□□□□ -2.55
HOXA1P49639 RNA5SP405-201ENST00000363059 114 ntBASIC-0.91□□□□□ -2.56
HOXA1P49639 Y_RNA.129-201ENST00000363392 110 ntBASIC-0.91□□□□□ -2.56
HOXA1P49639 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.91□□□□□ -2.56
HOXA1P49639 RNU6-808P-201ENST00000391233 108 ntBASIC-0.91□□□□□ -2.56
HOXA1P49639 RNU6-1326P-201ENST00000391262 107 ntBASIC-0.91□□□□□ -2.56
HOXA1P49639 MIR548F3-201ENST00000408509 87 ntBASIC-0.91□□□□□ -2.56
HOXA1P49639 RNA5SP180-201ENST00000516181 101 ntBASIC-0.91□□□□□ -2.56
HOXA1P49639 MIR4320-201ENST00000636981 65 ntBASIC-0.91□□□□□ -2.56
HOXA1P49639 MIR379-201ENST00000362218 67 ntBASIC-0.92□□□□□ -2.56
HOXA1P49639 Y_RNA.134-201ENST00000363435 105 ntBASIC-0.92□□□□□ -2.56
HOXA1P49639 Y_RNA.345-201ENST00000365384 92 ntBASIC-0.92□□□□□ -2.56
HOXA1P49639 RNU6-838P-201ENST00000363399 108 ntBASIC-0.93□□□□□ -2.56
HOXA1P49639 RNA5SP224-201ENST00000365069 126 ntBASIC-0.93□□□□□ -2.56
HOXA1P49639 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.93□□□□□ -2.56
HOXA1P49639 RNU6-194P-201ENST00000363862 105 ntBASIC-0.94□□□□□ -2.56
HOXA1P49639 Y_RNA.543-201ENST00000384649 107 ntBASIC-0.94□□□□□ -2.56
HOXA1P49639 AL627230.5-201ENST00000619807 58 ntBASIC-0.94□□□□□ -2.56
HOXA1P49639 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.95□□□□□ -2.56
HOXA1P49639 RNU6-854P-201ENST00000364036 107 ntBASIC-0.95□□□□□ -2.56
HOXA1P49639 Y_RNA.206-201ENST00000364136 102 ntBASIC-0.95□□□□□ -2.56
HOXA1P49639 Y_RNA.260-201ENST00000364628 101 ntBASIC-0.95□□□□□ -2.56
HOXA1P49639 RNA5SP331-201ENST00000364986 107 ntBASIC-0.95□□□□□ -2.56
HOXA1P49639 RNU6-59P-201ENST00000384787 107 ntBASIC-0.95□□□□□ -2.56
HOXA1P49639 MIR545-201ENST00000385085 106 ntBASIC-0.95□□□□□ -2.56
HOXA1P49639 RNU6-788P-201ENST00000390967 104 ntBASIC-0.95□□□□□ -2.56
HOXA1P49639 SNORD115.2-201ENST00000391126 59 ntBASIC-0.95□□□□□ -2.56
HOXA1P49639 RNU6-176P-201ENST00000517196 105 ntBASIC-0.95□□□□□ -2.56
HOXA1P49639 VTRNA2-1-201ENST00000602301 127 ntBASIC-0.95□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms