Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNU6-520P-201ENST00000384717 104 ntBASIC-1.11□□□□□ -2.59
SOX3P41225 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.11□□□□□ -2.59
SOX3P41225 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.12□□□□□ -2.59
SOX3P41225 MIR23C-201ENST00000579846 100 ntBASIC-1.12□□□□□ -2.59
SOX3P41225 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.13□□□□□ -2.59
SOX3P41225 SNORD113-4-201ENST00000364802 75 ntBASIC-1.14□□□□□ -2.59
SOX3P41225 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.14□□□□□ -2.59
SOX3P41225 RNA5SP86-201ENST00000390869 98 ntBASIC-1.14□□□□□ -2.59
SOX3P41225 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.15□□□□□ -2.59
SOX3P41225 SNORD18.1-201ENST00000363807 70 ntBASIC-1.16□□□□□ -2.6
SOX3P41225 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.16□□□□□ -2.6
SOX3P41225 RNU6-590P-201ENST00000365039 107 ntBASIC-1.16□□□□□ -2.6
SOX3P41225 MIR633-201ENST00000384821 98 ntBASIC-1.16□□□□□ -2.6
SOX3P41225 RNU6-419P-201ENST00000517030 63 ntBASIC-1.16□□□□□ -2.6
SOX3P41225 MIR4520-1-201ENST00000582609 70 ntBASIC-1.16□□□□□ -2.6
SOX3P41225 AL451105.1-201ENST00000450005 189 ntBASIC-1.17□□□□□ -2.6
SOX3P41225 AC139453.2-201ENST00000487255 133 ntBASIC-1.17□□□□□ -2.6
SOX3P41225 MIR202-201ENST00000362219 110 ntBASIC-1.18□□□□□ -2.6
SOX3P41225 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.18□□□□□ -2.6
SOX3P41225 RNU6-829P-201ENST00000363700 112 ntBASIC-1.18□□□□□ -2.6
SOX3P41225 MIR581-201ENST00000384895 96 ntBASIC-1.18□□□□□ -2.6
SOX3P41225 U6.97-201ENST00000636904 101 ntBASIC-1.18□□□□□ -2.6
SOX3P41225 RNU6-400P-201ENST00000391173 106 ntBASIC-1.19□□□□□ -2.6
SOX3P41225 RNU6-530P-201ENST00000391180 107 ntBASIC-1.19□□□□□ -2.6
SOX3P41225 RNU6-118P-201ENST00000516552 102 ntBASIC-1.19□□□□□ -2.6
SOX3P41225 RNU6-119P-201ENST00000364882 107 ntBASIC-1.2□□□□□ -2.6
SOX3P41225 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.2□□□□□ -2.6
SOX3P41225 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.21□□□□□ -2.6
SOX3P41225 AC125388.1-201ENST00000459631 156 ntBASIC-1.22□□□□□ -2.6
SOX3P41225 RNU6-980P-201ENST00000516925 103 ntBASIC-1.22□□□□□ -2.6
SOX3P41225 RNU6-361P-201ENST00000364454 107 ntBASIC-1.24□□□□□ -2.61
SOX3P41225 MIR548X-201ENST00000580069 75 ntBASIC-1.24□□□□□ -2.61
SOX3P41225 RNU6-742P-201ENST00000365289 107 ntBASIC-1.25□□□□□ -2.61
SOX3P41225 RNU6-695P-201ENST00000391157 104 ntBASIC-1.25□□□□□ -2.61
SOX3P41225 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.26□□□□□ -2.61
SOX3P41225 MIR548N-201ENST00000408742 75 ntBASIC-1.26□□□□□ -2.61
SOX3P41225 RNA5SP93-201ENST00000362525 114 ntBASIC-1.27□□□□□ -2.61
SOX3P41225 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.27□□□□□ -2.61
SOX3P41225 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.27□□□□□ -2.61
SOX3P41225 SNORA17.4-201ENST00000391287 132 ntBASIC-1.27□□□□□ -2.61
SOX3P41225 AC079150.2-201ENST00000443733 78 ntBASIC-1.27□□□□□ -2.61
SOX3P41225 MIR664B-201ENST00000626756 61 ntBASIC-1.27□□□□□ -2.61
SOX3P41225 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.28□□□□□ -2.61
SOX3P41225 RNY4P7-201ENST00000364600 96 ntBASIC-1.28□□□□□ -2.61
SOX3P41225 AC108019.1-201ENST00000512540 175 ntBASIC-1.28□□□□□ -2.61
SOX3P41225 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.28□□□□□ -2.61
SOX3P41225 MIR487B-201ENST00000385021 84 ntBASIC-1.29□□□□□ -2.62
SOX3P41225 MIR548H1-201ENST00000408610 102 ntBASIC-1.29□□□□□ -2.62
SOX3P41225 SNORD54-201ENST00000459159 67 ntBASIC-1.29□□□□□ -2.62
SOX3P41225 MIR3123-201ENST00000583417 75 ntBASIC-1.29□□□□□ -2.62
SOX3P41225 MIR4426-201ENST00000640330 63 ntBASIC-1.29□□□□□ -2.62
SOX3P41225 SNORD60-201ENST00000383903 83 ntBASIC-1.3□□□□□ -2.62
SOX3P41225 MIR4756-201ENST00000577874 78 ntBASIC-1.3□□□□□ -2.62
SOX3P41225 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.31□□□□□ -2.62
SOX3P41225 SNORD45.2-201ENST00000363552 72 ntBASIC-1.31□□□□□ -2.62
SOX3P41225 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.31□□□□□ -2.62
SOX3P41225 RNU6-68P-201ENST00000516576 104 ntBASIC-1.32□□□□□ -2.62
SOX3P41225 MIR3139-201ENST00000579145 76 ntBASIC-1.32□□□□□ -2.62
SOX3P41225 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.33□□□□□ -2.62
SOX3P41225 SNORD18C-201ENST00000362704 69 ntBASIC-1.34□□□□□ -2.62
SOX3P41225 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.34□□□□□ -2.62
SOX3P41225 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.35□□□□□ -2.63
SOX3P41225 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.35□□□□□ -2.63
SOX3P41225 RNU6-499P-201ENST00000365615 107 ntBASIC-1.35□□□□□ -2.63
SOX3P41225 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.36□□□□□ -2.63
SOX3P41225 RNU4-33P-201ENST00000364316 85 ntBASIC-1.37□□□□□ -2.63
SOX3P41225 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.37□□□□□ -2.63
SOX3P41225 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.37□□□□□ -2.63
SOX3P41225 MIR548W-201ENST00000581970 74 ntBASIC-1.37□□□□□ -2.63
SOX3P41225 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.38□□□□□ -2.63
SOX3P41225 RNU6-300P-201ENST00000459080 104 ntBASIC-1.38□□□□□ -2.63
SOX3P41225 RNA5SP405-201ENST00000363059 114 ntBASIC-1.39□□□□□ -2.63
SOX3P41225 RNU6-841P-201ENST00000383872 107 ntBASIC-1.39□□□□□ -2.63
SOX3P41225 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.39□□□□□ -2.63
SOX3P41225 MT-TM-201ENST00000387377 68 ntBASIC-1.39□□□□□ -2.63
SOX3P41225 RNY4-201ENST00000516507 96 ntBASIC-1.39□□□□□ -2.63
SOX3P41225 snoU13.10-201ENST00000459301 103 ntBASIC-1.4□□□□□ -2.63
SOX3P41225 MIR548AM-201ENST00000584298 74 ntBASIC-1.4□□□□□ -2.63
SOX3P41225 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.4□□□□□ -2.63
SOX3P41225 RNU6-788P-201ENST00000390967 104 ntBASIC-1.42□□□□□ -2.64
SOX3P41225 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.43□□□□□ -2.64
SOX3P41225 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.44□□□□□ -2.64
SOX3P41225 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.44□□□□□ -2.64
SOX3P41225 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.45□□□□□ -2.64
SOX3P41225 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.45□□□□□ -2.64
SOX3P41225 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.45□□□□□ -2.64
SOX3P41225 RNU6-912P-201ENST00000363800 104 ntBASIC-1.46□□□□□ -2.64
SOX3P41225 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.46□□□□□ -2.64
SOX3P41225 MIR548H4-201ENST00000408689 111 ntBASIC-1.47□□□□□ -2.64
SOX3P41225 RNU6-176P-201ENST00000517196 105 ntBASIC-1.48□□□□□ -2.65
SOX3P41225 MIR548AL-201ENST00000578416 97 ntBASIC-1.48□□□□□ -2.65
SOX3P41225 RNU4-88P-201ENST00000411220 86 ntBASIC-1.49□□□□□ -2.65
SOX3P41225 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.49□□□□□ -2.65
SOX3P41225 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.5□□□□□ -2.65
SOX3P41225 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.5□□□□□ -2.65
SOX3P41225 MIR379-201ENST00000362218 67 ntBASIC-1.51□□□□□ -2.65
SOX3P41225 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.51□□□□□ -2.65
SOX3P41225 RNU6-936P-201ENST00000384005 107 ntBASIC-1.52□□□□□ -2.65
SOX3P41225 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.52□□□□□ -2.65
SOX3P41225 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.54□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 225.7 ms