Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RNA5SP461-201ENST00000516451 104 ntBASIC-1.65□□□□□ -2.67
HOXC11O43248 MIR487B-201ENST00000385021 84 ntBASIC-1.66□□□□□ -2.68
HOXC11O43248 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.66□□□□□ -2.68
HOXC11O43248 RNU6-446P-201ENST00000362827 106 ntBASIC-1.67□□□□□ -2.68
HOXC11O43248 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.67□□□□□ -2.68
HOXC11O43248 RNU6-841P-201ENST00000383872 107 ntBASIC-1.67□□□□□ -2.68
HOXC11O43248 MIR601-201ENST00000385256 79 ntBASIC-1.68□□□□□ -2.68
HOXC11O43248 MIR4426-201ENST00000640330 63 ntBASIC-1.68□□□□□ -2.68
HOXC11O43248 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.71□□□□□ -2.68
HOXC11O43248 MIR548AM-201ENST00000584298 74 ntBASIC-1.71□□□□□ -2.68
HOXC11O43248 RNU6-226P-201ENST00000363778 107 ntBASIC-1.72□□□□□ -2.68
HOXC11O43248 MIR548X-201ENST00000580069 75 ntBASIC-1.72□□□□□ -2.68
HOXC11O43248 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.72□□□□□ -2.68
HOXC11O43248 RNU6-590P-201ENST00000365039 107 ntBASIC-1.73□□□□□ -2.69
HOXC11O43248 RNU6-742P-201ENST00000365289 107 ntBASIC-1.76□□□□□ -2.69
HOXC11O43248 MIR633-201ENST00000384821 98 ntBASIC-1.76□□□□□ -2.69
HOXC11O43248 RNU6-300P-201ENST00000459080 104 ntBASIC-1.76□□□□□ -2.69
HOXC11O43248 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.77□□□□□ -2.69
HOXC11O43248 AC125388.1-201ENST00000459631 156 ntBASIC-1.77□□□□□ -2.69
HOXC11O43248 SNORD113-4-201ENST00000364802 75 ntBASIC-1.78□□□□□ -2.69
HOXC11O43248 snoU13.10-201ENST00000459301 103 ntBASIC-1.78□□□□□ -2.69
HOXC11O43248 RNU6-829P-201ENST00000363700 112 ntBASIC-1.79□□□□□ -2.7
HOXC11O43248 MIR548W-201ENST00000581970 74 ntBASIC-1.79□□□□□ -2.7
HOXC11O43248 MIR4723-201ENST00000585070 81 ntBASIC-1.79□□□□□ -2.7
HOXC11O43248 RNU6-176P-201ENST00000517196 105 ntBASIC-1.8□□□□□ -2.7
HOXC11O43248 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.8□□□□□ -2.7
HOXC11O43248 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.81□□□□□ -2.7
HOXC11O43248 MIR1285-2-201ENST00000408311 88 ntBASIC-1.81□□□□□ -2.7
HOXC11O43248 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.81□□□□□ -2.7
HOXC11O43248 SNORD18.1-201ENST00000363807 70 ntBASIC-1.82□□□□□ -2.7
HOXC11O43248 AC108019.1-201ENST00000512540 175 ntBASIC-1.82□□□□□ -2.7
HOXC11O43248 RNU6-68P-201ENST00000516576 104 ntBASIC-1.82□□□□□ -2.7
HOXC11O43248 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.82□□□□□ -2.7
HOXC11O43248 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.83□□□□□ -2.7
HOXC11O43248 MIR379-201ENST00000362218 67 ntBASIC-1.84□□□□□ -2.7
HOXC11O43248 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.85□□□□□ -2.71
HOXC11O43248 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.85□□□□□ -2.71
HOXC11O43248 RNU4-88P-201ENST00000411220 86 ntBASIC-1.85□□□□□ -2.71
HOXC11O43248 RNA5SP180-201ENST00000516181 101 ntBASIC-1.85□□□□□ -2.71
HOXC11O43248 MIR365A-201ENST00000362260 87 ntBASIC-1.86□□□□□ -2.71
HOXC11O43248 MIR1246-201ENST00000636535 73 ntBASIC-1.86□□□□□ -2.71
HOXC11O43248 AC139453.2-201ENST00000487255 133 ntBASIC-1.87□□□□□ -2.71
HOXC11O43248 AC079150.2-201ENST00000443733 78 ntBASIC-1.88□□□□□ -2.71
HOXC11O43248 MIR4756-201ENST00000577874 78 ntBASIC-1.88□□□□□ -2.71
HOXC11O43248 RNU4-33P-201ENST00000364316 85 ntBASIC-1.89□□□□□ -2.71
HOXC11O43248 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.89□□□□□ -2.71
HOXC11O43248 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.89□□□□□ -2.71
HOXC11O43248 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.89□□□□□ -2.71
HOXC11O43248 RNU6-912P-201ENST00000363800 104 ntBASIC-1.9□□□□□ -2.71
HOXC11O43248 RNU6-980P-201ENST00000516925 103 ntBASIC-1.9□□□□□ -2.71
HOXC11O43248 MIR4441-201ENST00000582623 100 ntBASIC-1.9□□□□□ -2.71
HOXC11O43248 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.91□□□□□ -2.72
HOXC11O43248 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.91□□□□□ -2.72
HOXC11O43248 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.91□□□□□ -2.72
HOXC11O43248 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.91□□□□□ -2.72
HOXC11O43248 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.91□□□□□ -2.72
HOXC11O43248 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.93□□□□□ -2.72
HOXC11O43248 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.94□□□□□ -2.72
HOXC11O43248 MIR664B-201ENST00000626756 61 ntBASIC-1.94□□□□□ -2.72
HOXC11O43248 AC097484.2-201ENST00000509147 251 ntBASIC-1.95□□□□□ -2.72
HOXC11O43248 RNU6-499P-201ENST00000365615 107 ntBASIC-1.96□□□□□ -2.72
HOXC11O43248 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.97□□□□□ -2.72
HOXC11O43248 SNORD114-3-201ENST00000364969 75 ntBASIC-1.98□□□□□ -2.73
HOXC11O43248 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.98□□□□□ -2.73
HOXC11O43248 RNU6-983P-201ENST00000516004 103 ntBASIC-1.98□□□□□ -2.73
HOXC11O43248 U4.2-201ENST00000618561 85 ntBASIC-1.98□□□□□ -2.73
HOXC11O43248 SNORD113-3-201ENST00000364830 72 ntBASIC-1.99□□□□□ -2.73
HOXC11O43248 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.99□□□□□ -2.73
HOXC11O43248 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.99□□□□□ -2.73
HOXC11O43248 MIR548AL-201ENST00000578416 97 ntBASIC-1.99□□□□□ -2.73
HOXC11O43248 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.99□□□□□ -2.73
HOXC11O43248 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.99□□□□□ -2.73
HOXC11O43248 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.99□□□□□ -2.73
HOXC11O43248 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.99□□□□□ -2.73
HOXC11O43248 Y_RNA.284-201ENST00000364806 102 ntBASIC-2□□□□□ -2.73
HOXC11O43248 Y_RNA.442-201ENST00000384131 102 ntBASIC-2□□□□□ -2.73
HOXC11O43248 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.01□□□□□ -2.73
HOXC11O43248 MIR4317-201ENST00000637586 65 ntBASIC-2.01□□□□□ -2.73
HOXC11O43248 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.04□□□□□ -2.74
HOXC11O43248 Y_RNA.543-201ENST00000384649 107 ntBASIC-2.04□□□□□ -2.74
HOXC11O43248 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.04□□□□□ -2.74
HOXC11O43248 FTX_4.1-201ENST00000616291 147 ntBASIC-2.04□□□□□ -2.74
HOXC11O43248 MIR548H4-201ENST00000408689 111 ntBASIC-2.05□□□□□ -2.74
HOXC11O43248 Y_RNA.616-201ENST00000410835 95 ntBASIC-2.05□□□□□ -2.74
HOXC11O43248 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2.06□□□□□ -2.74
HOXC11O43248 RNU6-118P-201ENST00000516552 102 ntBASIC-2.07□□□□□ -2.74
HOXC11O43248 MIR1207-201ENST00000408249 87 ntBASIC-2.08□□□□□ -2.74
HOXC11O43248 MIR1254-1-201ENST00000408257 97 ntBASIC-2.08□□□□□ -2.74
HOXC11O43248 RNU6-822P-201ENST00000362707 106 ntBASIC-2.09□□□□□ -2.74
HOXC11O43248 Y_RNA.382-201ENST00000365672 114 ntBASIC-2.09□□□□□ -2.74
HOXC11O43248 Y_RNA.434-201ENST00000384090 100 ntBASIC-2.09□□□□□ -2.74
HOXC11O43248 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.09□□□□□ -2.74
HOXC11O43248 Y_RNA.55-201ENST00000362797 102 ntBASIC-2.11□□□□□ -2.75
HOXC11O43248 RNU6-838P-201ENST00000363399 108 ntBASIC-2.11□□□□□ -2.75
HOXC11O43248 RNU6-1204P-201ENST00000363948 107 ntBASIC-2.11□□□□□ -2.75
HOXC11O43248 MIR4748-201ENST00000578076 82 ntBASIC-2.11□□□□□ -2.75
HOXC11O43248 RNU6-1169P-201ENST00000363537 103 ntBASIC-2.12□□□□□ -2.75
HOXC11O43248 Y_RNA.379-201ENST00000365653 102 ntBASIC-2.12□□□□□ -2.75
HOXC11O43248 RNU6-936P-201ENST00000384005 107 ntBASIC-2.12□□□□□ -2.75
HOXC11O43248 RNU6-345P-201ENST00000517001 107 ntBASIC-2.12□□□□□ -2.75
Retrieved 100 of 98,524 protein–RNA pairs in 320 ms