Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 U4.2-201ENST00000618561 85 ntBASIC-0.55□□□□□ -2.5
LIMCH1Q9UPQ0 RNU6-995P-201ENST00000391244 107 ntBASIC-0.56□□□□□ -2.5
LIMCH1Q9UPQ0 MIR548Q-201ENST00000408404 100 ntBASIC-0.56□□□□□ -2.5
LIMCH1Q9UPQ0 MIR4324-201ENST00000584846 72 ntBASIC-0.56□□□□□ -2.5
LIMCH1Q9UPQ0 SNORD116.2-201ENST00000391251 93 ntBASIC-0.57□□□□□ -2.5
LIMCH1Q9UPQ0 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.57□□□□□ -2.5
LIMCH1Q9UPQ0 RNU7-151P-201ENST00000516930 53 ntBASIC-0.57□□□□□ -2.5
LIMCH1Q9UPQ0 RNU6-1079P-201ENST00000362861 110 ntBASIC-0.58□□□□□ -2.5
LIMCH1Q9UPQ0 MIR1207-201ENST00000408249 87 ntBASIC-0.58□□□□□ -2.5
LIMCH1Q9UPQ0 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.58□□□□□ -2.5
LIMCH1Q9UPQ0 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 RNU6-10P-201ENST00000384036 107 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 AL500527.2-201ENST00000454105 95 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 RNU7-160P-201ENST00000516660 62 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 MIR5683-201ENST00000636514 76 ntBASIC-0.6□□□□□ -2.51
LIMCH1Q9UPQ0 RNU6-810P-201ENST00000364001 107 ntBASIC-0.61□□□□□ -2.51
LIMCH1Q9UPQ0 MIR579-201ENST00000385221 98 ntBASIC-0.61□□□□□ -2.51
LIMCH1Q9UPQ0 MIR6738-201ENST00000619620 64 ntBASIC-0.61□□□□□ -2.51
LIMCH1Q9UPQ0 MIR7978-201ENST00000636158 59 ntBASIC-0.61□□□□□ -2.51
LIMCH1Q9UPQ0 MIR147A-201ENST00000385079 72 ntBASIC-0.62□□□□□ -2.51
LIMCH1Q9UPQ0 AP002795.1-201ENST00000534879 84 ntBASIC-0.62□□□□□ -2.51
LIMCH1Q9UPQ0 MIR3170-201ENST00000582699 77 ntBASIC-0.62□□□□□ -2.51
LIMCH1Q9UPQ0 MIR3115-201ENST00000577915 68 ntBASIC-0.63□□□□□ -2.51
LIMCH1Q9UPQ0 MIR378F-201ENST00000578143 78 ntBASIC-0.63□□□□□ -2.51
LIMCH1Q9UPQ0 MIR4490-201ENST00000582647 84 ntBASIC-0.63□□□□□ -2.51
LIMCH1Q9UPQ0 SNORD114-3-201ENST00000364969 75 ntBASIC-0.64□□□□□ -2.51
LIMCH1Q9UPQ0 SNORA40B-201ENST00000385573 128 ntBASIC-0.64□□□□□ -2.51
LIMCH1Q9UPQ0 RNU6-1111P-201ENST00000391118 107 ntBASIC-0.64□□□□□ -2.51
LIMCH1Q9UPQ0 RNU6-499P-201ENST00000365615 107 ntBASIC-0.65□□□□□ -2.51
LIMCH1Q9UPQ0 SNORA40.16-201ENST00000517238 121 ntBASIC-0.65□□□□□ -2.51
LIMCH1Q9UPQ0 RNU6-446P-201ENST00000362827 106 ntBASIC-0.66□□□□□ -2.52
LIMCH1Q9UPQ0 RNU6-431P-201ENST00000383874 107 ntBASIC-0.66□□□□□ -2.52
LIMCH1Q9UPQ0 MIR633-201ENST00000384821 98 ntBASIC-0.66□□□□□ -2.52
LIMCH1Q9UPQ0 MIR125B1-201ENST00000385236 88 ntBASIC-0.66□□□□□ -2.52
LIMCH1Q9UPQ0 SNORD83B-201ENST00000386745 93 ntBASIC-0.66□□□□□ -2.52
LIMCH1Q9UPQ0 SNORD64-201ENST00000386683 67 ntBASIC-0.67□□□□□ -2.52
LIMCH1Q9UPQ0 RNA5SP461-201ENST00000516451 104 ntBASIC-0.67□□□□□ -2.52
LIMCH1Q9UPQ0 MIR4499-201ENST00000584834 69 ntBASIC-0.67□□□□□ -2.52
LIMCH1Q9UPQ0 RNU6-247P-201ENST00000362636 107 ntBASIC-0.69□□□□□ -2.52
LIMCH1Q9UPQ0 Y_RNA.69-201ENST00000362885 109 ntBASIC-0.69□□□□□ -2.52
LIMCH1Q9UPQ0 RNU6-829P-201ENST00000363700 112 ntBASIC-0.69□□□□□ -2.52
LIMCH1Q9UPQ0 SNORD114-25-201ENST00000363742 72 ntBASIC-0.7□□□□□ -2.52
LIMCH1Q9UPQ0 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.7□□□□□ -2.52
LIMCH1Q9UPQ0 MIR507-201ENST00000385234 94 ntBASIC-0.7□□□□□ -2.52
LIMCH1Q9UPQ0 RNU6-828P-201ENST00000364876 107 ntBASIC-0.71□□□□□ -2.52
LIMCH1Q9UPQ0 MIR520D-201ENST00000385002 87 ntBASIC-0.71□□□□□ -2.52
LIMCH1Q9UPQ0 AC079150.2-201ENST00000443733 78 ntBASIC-0.71□□□□□ -2.52
LIMCH1Q9UPQ0 RNU6-1206P-201ENST00000516339 103 ntBASIC-0.71□□□□□ -2.52
LIMCH1Q9UPQ0 Y_RNA.699-201ENST00000516803 93 ntBASIC-0.72□□□□□ -2.52
LIMCH1Q9UPQ0 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.72□□□□□ -2.52
LIMCH1Q9UPQ0 MIR365A-201ENST00000362260 87 ntBASIC-0.73□□□□□ -2.53
LIMCH1Q9UPQ0 MIR4306-201ENST00000583390 91 ntBASIC-0.73□□□□□ -2.53
LIMCH1Q9UPQ0 MTRNR2L9-201ENST00000622562 75 ntBASIC-0.73□□□□□ -2.53
LIMCH1Q9UPQ0 Y_RNA.321-201ENST00000365149 102 ntBASIC-0.74□□□□□ -2.53
LIMCH1Q9UPQ0 SNORD63.2-201ENST00000516303 64 ntBASIC-0.74□□□□□ -2.53
LIMCH1Q9UPQ0 MIR382-201ENST00000637119 76 ntBASIC-0.74□□□□□ -2.53
LIMCH1Q9UPQ0 SNORA27.2-201ENST00000363365 126 ntBASIC-0.75□□□□□ -2.53
LIMCH1Q9UPQ0 RNU6-608P-201ENST00000383927 104 ntBASIC-0.75□□□□□ -2.53
LIMCH1Q9UPQ0 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-0.75□□□□□ -2.53
LIMCH1Q9UPQ0 snoU83B.1-201ENST00000517136 88 ntBASIC-0.75□□□□□ -2.53
LIMCH1Q9UPQ0 uc_338.19-201ENST00000616808 99 ntBASIC-0.75□□□□□ -2.53
LIMCH1Q9UPQ0 RNA5SP26-201ENST00000362406 119 ntBASIC-0.76□□□□□ -2.53
LIMCH1Q9UPQ0 Y_RNA.139-201ENST00000363464 102 ntBASIC-0.76□□□□□ -2.53
LIMCH1Q9UPQ0 RNU6-1312P-201ENST00000362425 108 ntBASIC-0.77□□□□□ -2.53
LIMCH1Q9UPQ0 RPL35AP4-201ENST00000412007 102 ntBASIC-0.77□□□□□ -2.53
LIMCH1Q9UPQ0 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.78□□□□□ -2.53
LIMCH1Q9UPQ0 RNU6-974P-201ENST00000384099 108 ntBASIC-0.78□□□□□ -2.53
LIMCH1Q9UPQ0 SNORD45.2-201ENST00000363552 72 ntBASIC-0.79□□□□□ -2.54
LIMCH1Q9UPQ0 MIR29B1-201ENST00000385015 81 ntBASIC-0.79□□□□□ -2.54
LIMCH1Q9UPQ0 RNU6-258P-201ENST00000390884 101 ntBASIC-0.79□□□□□ -2.54
LIMCH1Q9UPQ0 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.79□□□□□ -2.54
LIMCH1Q9UPQ0 RNU6-419P-201ENST00000517030 63 ntBASIC-0.79□□□□□ -2.54
LIMCH1Q9UPQ0 MIR23C-201ENST00000579846 100 ntBASIC-0.79□□□□□ -2.54
LIMCH1Q9UPQ0 SNORD113-4-201ENST00000364802 75 ntBASIC-0.8□□□□□ -2.54
LIMCH1Q9UPQ0 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.8□□□□□ -2.54
LIMCH1Q9UPQ0 MIR1285-2-201ENST00000408311 88 ntBASIC-0.8□□□□□ -2.54
LIMCH1Q9UPQ0 AC090616.4-201ENST00000448026 115 ntBASIC-0.8□□□□□ -2.54
LIMCH1Q9UPQ0 MIR4441-201ENST00000582623 100 ntBASIC-0.8□□□□□ -2.54
LIMCH1Q9UPQ0 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.81□□□□□ -2.54
LIMCH1Q9UPQ0 RNA5SP180-201ENST00000516181 101 ntBASIC-0.81□□□□□ -2.54
LIMCH1Q9UPQ0 MIR548X-201ENST00000580069 75 ntBASIC-0.81□□□□□ -2.54
LIMCH1Q9UPQ0 MIR6818-201ENST00000621576 65 ntBASIC-0.81□□□□□ -2.54
LIMCH1Q9UPQ0 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.81□□□□□ -2.54
LIMCH1Q9UPQ0 MIR3165-201ENST00000579874 75 ntBASIC-0.82□□□□□ -2.54
LIMCH1Q9UPQ0 RNU6-226P-201ENST00000363778 107 ntBASIC-0.83□□□□□ -2.54
LIMCH1Q9UPQ0 AL451105.1-201ENST00000450005 189 ntBASIC-0.83□□□□□ -2.54
LIMCH1Q9UPQ0 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.84□□□□□ -2.54
LIMCH1Q9UPQ0 Y_RNA.442-201ENST00000384131 102 ntBASIC-0.85□□□□□ -2.55
LIMCH1Q9UPQ0 RNU6-706P-201ENST00000517229 104 ntBASIC-0.86□□□□□ -2.55
LIMCH1Q9UPQ0 RNY4P27-201ENST00000363341 96 ntBASIC-0.87□□□□□ -2.55
LIMCH1Q9UPQ0 RNU6-614P-201ENST00000384369 107 ntBASIC-0.87□□□□□ -2.55
LIMCH1Q9UPQ0 U6.59-201ENST00000615686 107 ntBASIC-0.87□□□□□ -2.55
LIMCH1Q9UPQ0 MIR8485-201ENST00000401372 91 ntBASIC-0.88□□□□□ -2.55
LIMCH1Q9UPQ0 Y_RNA.684-201ENST00000516510 99 ntBASIC-0.88□□□□□ -2.55
LIMCH1Q9UPQ0 RNU6-164P-201ENST00000364604 103 ntBASIC-0.89□□□□□ -2.55
LIMCH1Q9UPQ0 RNU7-134P-201ENST00000458997 64 ntBASIC-0.89□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms