Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC018880.2-201ENST00000414265 201 ntBASIC-1.83□□□□□ -2.7
CPSF3Q9UKF6 RNU7-151P-201ENST00000516930 53 ntBASIC-1.83□□□□□ -2.7
CPSF3Q9UKF6 SNORA26.2-201ENST00000390922 122 ntBASIC-1.84□□□□□ -2.7
CPSF3Q9UKF6 RNU6-247P-201ENST00000362636 107 ntBASIC-1.85□□□□□ -2.71
CPSF3Q9UKF6 RNU6-228P-201ENST00000362700 106 ntBASIC-1.85□□□□□ -2.71
CPSF3Q9UKF6 Y_RNA.388-201ENST00000383919 113 ntBASIC-1.85□□□□□ -2.71
CPSF3Q9UKF6 MIR579-201ENST00000385221 98 ntBASIC-1.85□□□□□ -2.71
CPSF3Q9UKF6 RNU6-663P-201ENST00000391105 106 ntBASIC-1.85□□□□□ -2.71
CPSF3Q9UKF6 RNU6-995P-201ENST00000391244 107 ntBASIC-1.85□□□□□ -2.71
CPSF3Q9UKF6 U4.2-201ENST00000618561 85 ntBASIC-1.85□□□□□ -2.71
CPSF3Q9UKF6 RNU6-1255P-201ENST00000363434 112 ntBASIC-1.86□□□□□ -2.71
CPSF3Q9UKF6 RNU6-523P-201ENST00000516304 54 ntBASIC-1.86□□□□□ -2.71
CPSF3Q9UKF6 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.87□□□□□ -2.71
CPSF3Q9UKF6 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.87□□□□□ -2.71
CPSF3Q9UKF6 RNU6-258P-201ENST00000390884 101 ntBASIC-1.87□□□□□ -2.71
CPSF3Q9UKF6 MIR1255A-201ENST00000408338 113 ntBASIC-1.87□□□□□ -2.71
CPSF3Q9UKF6 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.87□□□□□ -2.71
CPSF3Q9UKF6 RNU6-857P-201ENST00000515893 110 ntBASIC-1.87□□□□□ -2.71
CPSF3Q9UKF6 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.87□□□□□ -2.71
CPSF3Q9UKF6 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.87□□□□□ -2.71
CPSF3Q9UKF6 MIR6502-201ENST00000617296 76 ntBASIC-1.87□□□□□ -2.71
CPSF3Q9UKF6 MIR7978-201ENST00000636158 59 ntBASIC-1.87□□□□□ -2.71
CPSF3Q9UKF6 SNORD60.1-201ENST00000362451 73 ntBASIC-1.88□□□□□ -2.71
CPSF3Q9UKF6 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.88□□□□□ -2.71
CPSF3Q9UKF6 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.88□□□□□ -2.71
CPSF3Q9UKF6 RNU6-226P-201ENST00000363778 107 ntBASIC-1.89□□□□□ -2.71
CPSF3Q9UKF6 RNU6-279P-201ENST00000391297 101 ntBASIC-1.89□□□□□ -2.71
CPSF3Q9UKF6 MIR23C-201ENST00000579846 100 ntBASIC-1.89□□□□□ -2.71
CPSF3Q9UKF6 MIR4520-1-201ENST00000582609 70 ntBASIC-1.89□□□□□ -2.71
CPSF3Q9UKF6 MIR4441-201ENST00000582623 100 ntBASIC-1.89□□□□□ -2.71
CPSF3Q9UKF6 RNU6-79P-201ENST00000362511 107 ntBASIC-1.9□□□□□ -2.71
CPSF3Q9UKF6 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.91□□□□□ -2.72
CPSF3Q9UKF6 Y_RNA.43-201ENST00000362670 111 ntBASIC-1.93□□□□□ -2.72
CPSF3Q9UKF6 MIR125B1-201ENST00000385236 88 ntBASIC-1.93□□□□□ -2.72
CPSF3Q9UKF6 MIR4723-201ENST00000585070 81 ntBASIC-1.93□□□□□ -2.72
CPSF3Q9UKF6 MIR1246-201ENST00000636535 73 ntBASIC-1.93□□□□□ -2.72
CPSF3Q9UKF6 SNORA25.4-201ENST00000363666 124 ntBASIC-1.94□□□□□ -2.72
CPSF3Q9UKF6 RNU6-669P-201ENST00000365575 107 ntBASIC-1.94□□□□□ -2.72
CPSF3Q9UKF6 RNU6-400P-201ENST00000391173 106 ntBASIC-1.94□□□□□ -2.72
CPSF3Q9UKF6 SNORD63.2-201ENST00000516303 64 ntBASIC-1.94□□□□□ -2.72
CPSF3Q9UKF6 SNORD30.1-201ENST00000391309 70 ntBASIC-1.95□□□□□ -2.72
CPSF3Q9UKF6 SNORD114-3-201ENST00000364969 75 ntBASIC-1.97□□□□□ -2.72
CPSF3Q9UKF6 RNU6-871P-201ENST00000516122 100 ntBASIC-1.97□□□□□ -2.72
CPSF3Q9UKF6 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.98□□□□□ -2.73
CPSF3Q9UKF6 SNORD78.1-201ENST00000390866 65 ntBASIC-1.98□□□□□ -2.73
CPSF3Q9UKF6 AC120024.2-201ENST00000576526 175 ntBASIC-1.98□□□□□ -2.73
CPSF3Q9UKF6 SNORA27.2-201ENST00000363365 126 ntBASIC-1.99□□□□□ -2.73
CPSF3Q9UKF6 RNU6-231P-201ENST00000517122 103 ntBASIC-1.99□□□□□ -2.73
CPSF3Q9UKF6 MIR7110-201ENST00000612638 86 ntBASIC-1.99□□□□□ -2.73
CPSF3Q9UKF6 Y_RNA.55-201ENST00000362797 102 ntBASIC-2□□□□□ -2.73
CPSF3Q9UKF6 SNORA25.5-201ENST00000363782 126 ntBASIC-2□□□□□ -2.73
CPSF3Q9UKF6 RNU6-563P-201ENST00000364872 108 ntBASIC-2□□□□□ -2.73
CPSF3Q9UKF6 RNA5SP225-201ENST00000410874 135 ntBASIC-2□□□□□ -2.73
CPSF3Q9UKF6 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-2□□□□□ -2.73
CPSF3Q9UKF6 RNU7-160P-201ENST00000516660 62 ntBASIC-2.01□□□□□ -2.73
CPSF3Q9UKF6 RNU6-122P-201ENST00000516818 107 ntBASIC-2.01□□□□□ -2.73
CPSF3Q9UKF6 AC005520.4-201ENST00000604337 90 ntBASIC-2.01□□□□□ -2.73
CPSF3Q9UKF6 RNA5SP86-201ENST00000390869 98 ntBASIC-2.02□□□□□ -2.73
CPSF3Q9UKF6 Y_RNA.139-201ENST00000363464 102 ntBASIC-2.03□□□□□ -2.73
CPSF3Q9UKF6 RNU6-649P-201ENST00000384463 107 ntBASIC-2.03□□□□□ -2.73
CPSF3Q9UKF6 MIR1302-4-201ENST00000408701 150 ntBASIC-2.03□□□□□ -2.73
CPSF3Q9UKF6 U6.111-201ENST00000636093 83 ntBASIC-2.03□□□□□ -2.73
CPSF3Q9UKF6 RNU6-974P-201ENST00000384099 108 ntBASIC-2.04□□□□□ -2.74
CPSF3Q9UKF6 MIR1207-201ENST00000408249 87 ntBASIC-2.04□□□□□ -2.74
CPSF3Q9UKF6 Y_RNA.616-201ENST00000410835 95 ntBASIC-2.04□□□□□ -2.74
CPSF3Q9UKF6 Y_RNA.69-201ENST00000362885 109 ntBASIC-2.05□□□□□ -2.74
CPSF3Q9UKF6 RNU6-810P-201ENST00000364001 107 ntBASIC-2.05□□□□□ -2.74
CPSF3Q9UKF6 SNORD116.2-201ENST00000391251 93 ntBASIC-2.06□□□□□ -2.74
CPSF3Q9UKF6 RNU6-539P-201ENST00000516665 103 ntBASIC-2.06□□□□□ -2.74
CPSF3Q9UKF6 MIR4511-201ENST00000582784 87 ntBASIC-2.06□□□□□ -2.74
CPSF3Q9UKF6 Y_RNA.321-201ENST00000365149 102 ntBASIC-2.07□□□□□ -2.74
CPSF3Q9UKF6 MIR548H1-201ENST00000408610 102 ntBASIC-2.07□□□□□ -2.74
CPSF3Q9UKF6 Y_RNA.442-201ENST00000384131 102 ntBASIC-2.08□□□□□ -2.74
CPSF3Q9UKF6 Y_RNA.781-201ENST00000620301 103 ntBASIC-2.08□□□□□ -2.74
CPSF3Q9UKF6 RNU6-828P-201ENST00000364876 107 ntBASIC-2.09□□□□□ -2.74
CPSF3Q9UKF6 AC103706.3-201ENST00000636297 85 ntBASIC-2.1□□□□□ -2.75
CPSF3Q9UKF6 MIR4679-1-201ENST00000637619 75 ntBASIC-2.11□□□□□ -2.75
CPSF3Q9UKF6 SNORD18.1-201ENST00000363807 70 ntBASIC-2.12□□□□□ -2.75
CPSF3Q9UKF6 Y_RNA.565-201ENST00000384719 101 ntBASIC-2.12□□□□□ -2.75
CPSF3Q9UKF6 SNORA40B-201ENST00000385573 128 ntBASIC-2.12□□□□□ -2.75
CPSF3Q9UKF6 RNU6-695P-201ENST00000391157 104 ntBASIC-2.12□□□□□ -2.75
CPSF3Q9UKF6 RNY3P8-201ENST00000411366 126 ntBASIC-2.12□□□□□ -2.75
CPSF3Q9UKF6 RNU6-983P-201ENST00000516004 103 ntBASIC-2.12□□□□□ -2.75
CPSF3Q9UKF6 AC013734.1-201ENST00000619329 111 ntBASIC-2.13□□□□□ -2.75
CPSF3Q9UKF6 RNY4P27-201ENST00000363341 96 ntBASIC-2.15□□□□□ -2.75
CPSF3Q9UKF6 Y_RNA.175-201ENST00000363794 111 ntBASIC-2.15□□□□□ -2.75
CPSF3Q9UKF6 RNU6-1206P-201ENST00000516339 103 ntBASIC-2.15□□□□□ -2.75
CPSF3Q9UKF6 SNORA40.16-201ENST00000517238 121 ntBASIC-2.15□□□□□ -2.75
CPSF3Q9UKF6 RNU6-940P-201ENST00000363433 104 ntBASIC-2.16□□□□□ -2.76
CPSF3Q9UKF6 Y_RNA.223-201ENST00000364290 113 ntBASIC-2.16□□□□□ -2.76
CPSF3Q9UKF6 RNU7-119P-201ENST00000459279 63 ntBASIC-2.16□□□□□ -2.76
CPSF3Q9UKF6 RNU6-776P-201ENST00000364403 104 ntBASIC-2.17□□□□□ -2.76
CPSF3Q9UKF6 RNU6-1022P-201ENST00000365049 104 ntBASIC-2.17□□□□□ -2.76
CPSF3Q9UKF6 RNU6-800P-201ENST00000384473 103 ntBASIC-2.17□□□□□ -2.76
CPSF3Q9UKF6 RNU6-520P-201ENST00000384717 104 ntBASIC-2.18□□□□□ -2.76
CPSF3Q9UKF6 MIR4662A-201ENST00000637499 67 ntBASIC-2.18□□□□□ -2.76
CPSF3Q9UKF6 Y_RNA.678-201ENST00000516408 96 ntBASIC-2.19□□□□□ -2.76
CPSF3Q9UKF6 Y_RNA.543-201ENST00000384649 107 ntBASIC-2.2□□□□□ -2.76
CPSF3Q9UKF6 U6.97-201ENST00000636904 101 ntBASIC-2.21□□□□□ -2.76
CPSF3Q9UKF6 MIR3123-201ENST00000583417 75 ntBASIC-2.22□□□□□ -2.76
Retrieved 100 of 98,524 protein–RNA pairs in 162.8 ms