Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SNORA40.16-201ENST00000517238 121 ntBASIC-0.72□□□□□ -2.52
CCDC140Q96MF4 RNY1P9-201ENST00000532431 109 ntBASIC-0.72□□□□□ -2.52
CCDC140Q96MF4 MIR3170-201ENST00000582699 77 ntBASIC-0.72□□□□□ -2.52
CCDC140Q96MF4 RNU6-1111P-201ENST00000391118 107 ntBASIC-0.73□□□□□ -2.53
CCDC140Q96MF4 MIR3681-201ENST00000580089 72 ntBASIC-0.73□□□□□ -2.53
CCDC140Q96MF4 MIR4490-201ENST00000582647 84 ntBASIC-0.73□□□□□ -2.53
CCDC140Q96MF4 RNU6-247P-201ENST00000362636 107 ntBASIC-0.74□□□□□ -2.53
CCDC140Q96MF4 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.74□□□□□ -2.53
CCDC140Q96MF4 RNU7-160P-201ENST00000516660 62 ntBASIC-0.76□□□□□ -2.53
CCDC140Q96MF4 RNU6-1312P-201ENST00000362425 108 ntBASIC-0.77□□□□□ -2.53
CCDC140Q96MF4 MIR507-201ENST00000385234 94 ntBASIC-0.77□□□□□ -2.53
CCDC140Q96MF4 AC079150.2-201ENST00000443733 78 ntBASIC-0.77□□□□□ -2.53
CCDC140Q96MF4 MIR196A1-201ENST00000388006 70 ntBASIC-0.78□□□□□ -2.53
CCDC140Q96MF4 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.79□□□□□ -2.54
CCDC140Q96MF4 SNORD63.2-201ENST00000516303 64 ntBASIC-0.79□□□□□ -2.54
CCDC140Q96MF4 Y_RNA.69-201ENST00000362885 109 ntBASIC-0.8□□□□□ -2.54
CCDC140Q96MF4 MIR520D-201ENST00000385002 87 ntBASIC-0.8□□□□□ -2.54
CCDC140Q96MF4 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.8□□□□□ -2.54
CCDC140Q96MF4 SNORD114-25-201ENST00000363742 72 ntBASIC-0.81□□□□□ -2.54
CCDC140Q96MF4 MIR125B1-201ENST00000385236 88 ntBASIC-0.81□□□□□ -2.54
CCDC140Q96MF4 MIR587-201ENST00000384845 96 ntBASIC-0.82□□□□□ -2.54
CCDC140Q96MF4 RPL35AP4-201ENST00000412007 102 ntBASIC-0.82□□□□□ -2.54
CCDC140Q96MF4 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.82□□□□□ -2.54
CCDC140Q96MF4 SNORD113-4-201ENST00000364802 75 ntBASIC-0.83□□□□□ -2.54
CCDC140Q96MF4 RNU6-431P-201ENST00000383874 107 ntBASIC-0.83□□□□□ -2.54
CCDC140Q96MF4 SNORD64-201ENST00000386683 67 ntBASIC-0.83□□□□□ -2.54
CCDC140Q96MF4 RNU6-828P-201ENST00000364876 107 ntBASIC-0.84□□□□□ -2.54
CCDC140Q96MF4 SNORD83B-201ENST00000386745 93 ntBASIC-0.84□□□□□ -2.54
CCDC140Q96MF4 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.84□□□□□ -2.54
CCDC140Q96MF4 SNX3P1X-201ENST00000414887 175 ntBASIC-0.84□□□□□ -2.54
CCDC140Q96MF4 Y_RNA.139-201ENST00000363464 102 ntBASIC-0.85□□□□□ -2.55
CCDC140Q96MF4 RNU6-974P-201ENST00000384099 108 ntBASIC-0.85□□□□□ -2.55
CCDC140Q96MF4 MIR147A-201ENST00000385079 72 ntBASIC-0.85□□□□□ -2.55
CCDC140Q96MF4 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-0.85□□□□□ -2.55
CCDC140Q96MF4 RNU6-1206P-201ENST00000516339 103 ntBASIC-0.85□□□□□ -2.55
CCDC140Q96MF4 Y_RNA.699-201ENST00000516803 93 ntBASIC-0.85□□□□□ -2.55
CCDC140Q96MF4 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.86□□□□□ -2.55
CCDC140Q96MF4 MTRNR2L9-201ENST00000622562 75 ntBASIC-0.88□□□□□ -2.55
CCDC140Q96MF4 AL500527.2-201ENST00000454105 95 ntBASIC-0.89□□□□□ -2.55
CCDC140Q96MF4 MIR6738-201ENST00000619620 64 ntBASIC-0.89□□□□□ -2.55
CCDC140Q96MF4 RNU6-608P-201ENST00000383927 104 ntBASIC-0.9□□□□□ -2.55
CCDC140Q96MF4 RNU6-258P-201ENST00000390884 101 ntBASIC-0.9□□□□□ -2.55
CCDC140Q96MF4 RNU6-10P-201ENST00000384036 107 ntBASIC-0.91□□□□□ -2.56
CCDC140Q96MF4 MIR1468-201ENST00000410600 86 ntBASIC-0.91□□□□□ -2.56
CCDC140Q96MF4 MIR4320-201ENST00000636981 65 ntBASIC-0.91□□□□□ -2.56
CCDC140Q96MF4 RNU6-614P-201ENST00000384369 107 ntBASIC-0.92□□□□□ -2.56
CCDC140Q96MF4 U6.59-201ENST00000615686 107 ntBASIC-0.92□□□□□ -2.56
CCDC140Q96MF4 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.93□□□□□ -2.56
CCDC140Q96MF4 SCARNA17-201ENST00000516183 144 ntBASIC-0.93□□□□□ -2.56
CCDC140Q96MF4 snoU83B.1-201ENST00000517136 88 ntBASIC-0.94□□□□□ -2.56
CCDC140Q96MF4 uc_338.19-201ENST00000616808 99 ntBASIC-0.94□□□□□ -2.56
CCDC140Q96MF4 MTND4LP19-201ENST00000403051 166 ntBASIC-0.95□□□□□ -2.56
CCDC140Q96MF4 MIR4499-201ENST00000584834 69 ntBASIC-0.95□□□□□ -2.56
CCDC140Q96MF4 RNA5SP26-201ENST00000362406 119 ntBASIC-0.96□□□□□ -2.56
CCDC140Q96MF4 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.96□□□□□ -2.56
CCDC140Q96MF4 MIR4324-201ENST00000584846 72 ntBASIC-0.96□□□□□ -2.56
CCDC140Q96MF4 MIR382-201ENST00000637119 76 ntBASIC-0.96□□□□□ -2.56
CCDC140Q96MF4 MIR198-201ENST00000637333 62 ntBASIC-0.96□□□□□ -2.56
CCDC140Q96MF4 SNORA27.2-201ENST00000363365 126 ntBASIC-0.97□□□□□ -2.56
CCDC140Q96MF4 Y_RNA.321-201ENST00000365149 102 ntBASIC-0.97□□□□□ -2.56
CCDC140Q96MF4 RNU6-419P-201ENST00000517030 63 ntBASIC-0.97□□□□□ -2.56
CCDC140Q96MF4 MIR548X-201ENST00000580069 75 ntBASIC-0.97□□□□□ -2.56
CCDC140Q96MF4 MIR601-201ENST00000385256 79 ntBASIC-1□□□□□ -2.57
CCDC140Q96MF4 AC090616.4-201ENST00000448026 115 ntBASIC-1□□□□□ -2.57
CCDC140Q96MF4 SNORD45.2-201ENST00000363552 72 ntBASIC-1.02□□□□□ -2.57
CCDC140Q96MF4 AL451105.1-201ENST00000450005 189 ntBASIC-1.02□□□□□ -2.57
CCDC140Q96MF4 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.03□□□□□ -2.57
CCDC140Q96MF4 MIR378F-201ENST00000578143 78 ntBASIC-1.04□□□□□ -2.58
CCDC140Q96MF4 MIR4723-201ENST00000585070 81 ntBASIC-1.04□□□□□ -2.58
CCDC140Q96MF4 RNU6-936P-201ENST00000384005 107 ntBASIC-1.07□□□□□ -2.58
CCDC140Q96MF4 RNU6-530P-201ENST00000391180 107 ntBASIC-1.07□□□□□ -2.58
CCDC140Q96MF4 MIR6818-201ENST00000621576 65 ntBASIC-1.07□□□□□ -2.58
CCDC140Q96MF4 RNU4-33P-201ENST00000364316 85 ntBASIC-1.09□□□□□ -2.58
CCDC140Q96MF4 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.1□□□□□ -2.59
CCDC140Q96MF4 MIR23C-201ENST00000579846 100 ntBASIC-1.11□□□□□ -2.59
CCDC140Q96MF4 MIR3165-201ENST00000579874 75 ntBASIC-1.11□□□□□ -2.59
CCDC140Q96MF4 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.12□□□□□ -2.59
CCDC140Q96MF4 RNY3P8-201ENST00000411366 126 ntBASIC-1.12□□□□□ -2.59
CCDC140Q96MF4 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.12□□□□□ -2.59
CCDC140Q96MF4 RNU6-980P-201ENST00000516925 103 ntBASIC-1.12□□□□□ -2.59
CCDC140Q96MF4 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.12□□□□□ -2.59
CCDC140Q96MF4 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.12□□□□□ -2.59
CCDC140Q96MF4 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.12□□□□□ -2.59
CCDC140Q96MF4 MIR29B1-201ENST00000385015 81 ntBASIC-1.13□□□□□ -2.59
CCDC140Q96MF4 U4.2-201ENST00000618561 85 ntBASIC-1.13□□□□□ -2.59
CCDC140Q96MF4 MIR3115-201ENST00000577915 68 ntBASIC-1.16□□□□□ -2.6
CCDC140Q96MF4 AC018880.2-201ENST00000414265 201 ntBASIC-1.17□□□□□ -2.6
CCDC140Q96MF4 RNU7-134P-201ENST00000458997 64 ntBASIC-1.17□□□□□ -2.6
CCDC140Q96MF4 RNU6-164P-201ENST00000364604 103 ntBASIC-1.18□□□□□ -2.6
CCDC140Q96MF4 AC120024.2-201ENST00000576526 175 ntBASIC-1.18□□□□□ -2.6
CCDC140Q96MF4 RNU6-576P-201ENST00000390854 102 ntBASIC-1.19□□□□□ -2.6
CCDC140Q96MF4 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.19□□□□□ -2.6
CCDC140Q96MF4 MIR202-201ENST00000362219 110 ntBASIC-1.2□□□□□ -2.6
CCDC140Q96MF4 RNU6-808P-201ENST00000391233 108 ntBASIC-1.2□□□□□ -2.6
CCDC140Q96MF4 RNA5SP461-201ENST00000516451 104 ntBASIC-1.2□□□□□ -2.6
CCDC140Q96MF4 MIR4306-201ENST00000583390 91 ntBASIC-1.2□□□□□ -2.6
CCDC140Q96MF4 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.21□□□□□ -2.6
CCDC140Q96MF4 MIR365A-201ENST00000362260 87 ntBASIC-1.22□□□□□ -2.6
CCDC140Q96MF4 MIR8485-201ENST00000401372 91 ntBASIC-1.22□□□□□ -2.6
CCDC140Q96MF4 RNU6-753P-201ENST00000363926 107 ntBASIC-1.23□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 178.1 ms