Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 U7.4-201ENST00000614961 63 ntBASIC-1.73□□□□□ -2.69
VPS39Q96JC1 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.73□□□□□ -2.69
VPS39Q96JC1 RNU6-563P-201ENST00000364872 108 ntBASIC-1.74□□□□□ -2.69
VPS39Q96JC1 RNU6-540P-201ENST00000384622 101 ntBASIC-1.74□□□□□ -2.69
VPS39Q96JC1 RNU6-995P-201ENST00000391244 107 ntBASIC-1.74□□□□□ -2.69
VPS39Q96JC1 RNU6-92P-201ENST00000605893 104 ntBASIC-1.74□□□□□ -2.69
VPS39Q96JC1 RNU6-1298P-201ENST00000362456 101 ntBASIC-1.75□□□□□ -2.69
VPS39Q96JC1 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.75□□□□□ -2.69
VPS39Q96JC1 RNU6-573P-201ENST00000383938 106 ntBASIC-1.75□□□□□ -2.69
VPS39Q96JC1 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.75□□□□□ -2.69
VPS39Q96JC1 AC120024.2-201ENST00000576526 175 ntBASIC-1.75□□□□□ -2.69
VPS39Q96JC1 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.76□□□□□ -2.69
VPS39Q96JC1 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.76□□□□□ -2.69
VPS39Q96JC1 SNORD73B-201ENST00000364394 72 ntBASIC-1.76□□□□□ -2.69
VPS39Q96JC1 RNU6-669P-201ENST00000365575 107 ntBASIC-1.76□□□□□ -2.69
VPS39Q96JC1 SNORD63.2-201ENST00000516303 64 ntBASIC-1.76□□□□□ -2.69
VPS39Q96JC1 SNORD60.1-201ENST00000362451 73 ntBASIC-1.77□□□□□ -2.69
VPS39Q96JC1 RNU6-974P-201ENST00000384099 108 ntBASIC-1.77□□□□□ -2.69
VPS39Q96JC1 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.78□□□□□ -2.69
VPS39Q96JC1 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.78□□□□□ -2.69
VPS39Q96JC1 MIR1285-2-201ENST00000408311 88 ntBASIC-1.78□□□□□ -2.69
VPS39Q96JC1 RNU6-634P-201ENST00000459134 106 ntBASIC-1.78□□□□□ -2.69
VPS39Q96JC1 RNA5SP170-201ENST00000517150 101 ntBASIC-1.79□□□□□ -2.7
VPS39Q96JC1 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.8□□□□□ -2.7
VPS39Q96JC1 SNORD18.1-201ENST00000363807 70 ntBASIC-1.8□□□□□ -2.7
VPS39Q96JC1 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.8□□□□□ -2.7
VPS39Q96JC1 RNU6-663P-201ENST00000391105 106 ntBASIC-1.8□□□□□ -2.7
VPS39Q96JC1 RNU6-523P-201ENST00000516304 54 ntBASIC-1.8□□□□□ -2.7
VPS39Q96JC1 MIR23C-201ENST00000579846 100 ntBASIC-1.8□□□□□ -2.7
VPS39Q96JC1 MIR1246-201ENST00000636535 73 ntBASIC-1.81□□□□□ -2.7
VPS39Q96JC1 MIR365A-201ENST00000362260 87 ntBASIC-1.82□□□□□ -2.7
VPS39Q96JC1 Y_RNA.388-201ENST00000383919 113 ntBASIC-1.82□□□□□ -2.7
VPS39Q96JC1 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.82□□□□□ -2.7
VPS39Q96JC1 MIR125B1-201ENST00000385236 88 ntBASIC-1.82□□□□□ -2.7
VPS39Q96JC1 AC005520.4-201ENST00000604337 90 ntBASIC-1.82□□□□□ -2.7
VPS39Q96JC1 RNU6-695P-201ENST00000391157 104 ntBASIC-1.83□□□□□ -2.7
VPS39Q96JC1 MIR1255A-201ENST00000408338 113 ntBASIC-1.83□□□□□ -2.7
VPS39Q96JC1 RNU6-228P-201ENST00000362700 106 ntBASIC-1.84□□□□□ -2.7
VPS39Q96JC1 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.84□□□□□ -2.7
VPS39Q96JC1 AC108019.1-201ENST00000512540 175 ntBASIC-1.84□□□□□ -2.7
VPS39Q96JC1 AC013734.1-201ENST00000619329 111 ntBASIC-1.84□□□□□ -2.7
VPS39Q96JC1 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.84□□□□□ -2.7
VPS39Q96JC1 SNORA27.2-201ENST00000363365 126 ntBASIC-1.85□□□□□ -2.71
VPS39Q96JC1 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.85□□□□□ -2.71
VPS39Q96JC1 RNY4P29-201ENST00000410801 97 ntBASIC-1.85□□□□□ -2.71
VPS39Q96JC1 MIR4441-201ENST00000582623 100 ntBASIC-1.85□□□□□ -2.71
VPS39Q96JC1 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 RNU6-983P-201ENST00000516004 103 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 RNU6-231P-201ENST00000517122 103 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 MIR3202-2-201ENST00000635980 79 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 RNU6-810P-201ENST00000364001 107 ntBASIC-1.87□□□□□ -2.71
VPS39Q96JC1 SNORD30.1-201ENST00000391309 70 ntBASIC-1.87□□□□□ -2.71
VPS39Q96JC1 RNU6-857P-201ENST00000515893 110 ntBASIC-1.87□□□□□ -2.71
VPS39Q96JC1 MIR7110-201ENST00000612638 86 ntBASIC-1.87□□□□□ -2.71
VPS39Q96JC1 SNORD116.2-201ENST00000391251 93 ntBASIC-1.88□□□□□ -2.71
VPS39Q96JC1 RNY3P8-201ENST00000411366 126 ntBASIC-1.88□□□□□ -2.71
VPS39Q96JC1 MIR4756-201ENST00000577874 78 ntBASIC-1.88□□□□□ -2.71
VPS39Q96JC1 MIR3123-201ENST00000583417 75 ntBASIC-1.88□□□□□ -2.71
VPS39Q96JC1 U4.2-201ENST00000618561 85 ntBASIC-1.88□□□□□ -2.71
VPS39Q96JC1 SNORA26.2-201ENST00000390922 122 ntBASIC-1.89□□□□□ -2.71
VPS39Q96JC1 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.9□□□□□ -2.71
VPS39Q96JC1 SNORA25.5-201ENST00000363782 126 ntBASIC-1.9□□□□□ -2.71
VPS39Q96JC1 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.9□□□□□ -2.71
VPS39Q96JC1 U6.97-201ENST00000636904 101 ntBASIC-1.9□□□□□ -2.71
VPS39Q96JC1 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.91□□□□□ -2.72
VPS39Q96JC1 RNU6-1255P-201ENST00000363434 112 ntBASIC-1.92□□□□□ -2.72
VPS39Q96JC1 SNORA25.4-201ENST00000363666 124 ntBASIC-1.92□□□□□ -2.72
VPS39Q96JC1 RNU6-841P-201ENST00000383872 107 ntBASIC-1.92□□□□□ -2.72
VPS39Q96JC1 RNU6-279P-201ENST00000391297 101 ntBASIC-1.94□□□□□ -2.72
VPS39Q96JC1 RNA5SP225-201ENST00000410874 135 ntBASIC-1.94□□□□□ -2.72
VPS39Q96JC1 RNU7-160P-201ENST00000516660 62 ntBASIC-1.94□□□□□ -2.72
VPS39Q96JC1 RNU6-122P-201ENST00000516818 107 ntBASIC-1.94□□□□□ -2.72
VPS39Q96JC1 MIR548AM-201ENST00000584298 74 ntBASIC-1.94□□□□□ -2.72
VPS39Q96JC1 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.94□□□□□ -2.72
VPS39Q96JC1 MIR664B-201ENST00000626756 61 ntBASIC-1.94□□□□□ -2.72
VPS39Q96JC1 SNORD114-3-201ENST00000364969 75 ntBASIC-1.97□□□□□ -2.72
VPS39Q96JC1 RNU6-649P-201ENST00000384463 107 ntBASIC-1.97□□□□□ -2.72
VPS39Q96JC1 RNU6-520P-201ENST00000384717 104 ntBASIC-1.98□□□□□ -2.73
VPS39Q96JC1 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.98□□□□□ -2.73
VPS39Q96JC1 U6.111-201ENST00000636093 83 ntBASIC-1.98□□□□□ -2.73
VPS39Q96JC1 RNU6-828P-201ENST00000364876 107 ntBASIC-1.99□□□□□ -2.73
VPS39Q96JC1 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.99□□□□□ -2.73
VPS39Q96JC1 SNORD78.1-201ENST00000390866 65 ntBASIC-1.99□□□□□ -2.73
VPS39Q96JC1 RNU6-871P-201ENST00000516122 100 ntBASIC-1.99□□□□□ -2.73
VPS39Q96JC1 SNORA40.16-201ENST00000517238 121 ntBASIC-1.99□□□□□ -2.73
VPS39Q96JC1 SNORA40B-201ENST00000385573 128 ntBASIC-2□□□□□ -2.73
VPS39Q96JC1 Y_RNA.55-201ENST00000362797 102 ntBASIC-2.01□□□□□ -2.73
VPS39Q96JC1 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.01□□□□□ -2.73
VPS39Q96JC1 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.02□□□□□ -2.73
VPS39Q96JC1 Y_RNA.543-201ENST00000384649 107 ntBASIC-2.02□□□□□ -2.73
VPS39Q96JC1 RNU4-88P-201ENST00000411220 86 ntBASIC-2.02□□□□□ -2.73
VPS39Q96JC1 RNU6-1206P-201ENST00000516339 103 ntBASIC-2.02□□□□□ -2.73
VPS39Q96JC1 MIR4511-201ENST00000582784 87 ntBASIC-2.02□□□□□ -2.73
VPS39Q96JC1 MIR4723-201ENST00000585070 81 ntBASIC-2.02□□□□□ -2.73
VPS39Q96JC1 RNU6-980P-201ENST00000516925 103 ntBASIC-2.03□□□□□ -2.73
VPS39Q96JC1 MIR202-201ENST00000362219 110 ntBASIC-2.04□□□□□ -2.74
Retrieved 100 of 98,524 protein–RNA pairs in 247.1 ms