Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MIR4666B-201ENST00000578142 81 ntBASIC-1.71□□□□□ -2.68
BDNFP23560 RNU6-687P-201ENST00000516443 89 ntBASIC-1.72□□□□□ -2.68
BDNFP23560 MIR3134-201ENST00000579433 74 ntBASIC-1.72□□□□□ -2.68
BDNFP23560 MIR7978-201ENST00000636158 59 ntBASIC-1.72□□□□□ -2.68
BDNFP23560 MIR494-201ENST00000349529 81 ntBASIC-1.73□□□□□ -2.69
BDNFP23560 RNU6-153P-201ENST00000364422 104 ntBASIC-1.73□□□□□ -2.69
BDNFP23560 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.73□□□□□ -2.69
BDNFP23560 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.73□□□□□ -2.69
BDNFP23560 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.73□□□□□ -2.69
BDNFP23560 RNU6-92P-201ENST00000605893 104 ntBASIC-1.73□□□□□ -2.69
BDNFP23560 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.73□□□□□ -2.69
BDNFP23560 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.73□□□□□ -2.69
BDNFP23560 RNU6-563P-201ENST00000364872 108 ntBASIC-1.74□□□□□ -2.69
BDNFP23560 RNU6-669P-201ENST00000365575 107 ntBASIC-1.74□□□□□ -2.69
BDNFP23560 MIR579-201ENST00000385221 98 ntBASIC-1.74□□□□□ -2.69
BDNFP23560 SNORD63.2-201ENST00000516303 64 ntBASIC-1.74□□□□□ -2.69
BDNFP23560 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.75□□□□□ -2.69
BDNFP23560 MIR125B1-201ENST00000385236 88 ntBASIC-1.76□□□□□ -2.69
BDNFP23560 RNU6-294P-201ENST00000364999 102 ntBASIC-1.77□□□□□ -2.69
BDNFP23560 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.77□□□□□ -2.69
BDNFP23560 RNU6-411P-201ENST00000384451 107 ntBASIC-1.77□□□□□ -2.69
BDNFP23560 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.78□□□□□ -2.69
BDNFP23560 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.78□□□□□ -2.69
BDNFP23560 RNU6-820P-201ENST00000384273 107 ntBASIC-1.79□□□□□ -2.7
BDNFP23560 RNU6-523P-201ENST00000516304 54 ntBASIC-1.79□□□□□ -2.7
BDNFP23560 RNU7-160P-201ENST00000516660 62 ntBASIC-1.79□□□□□ -2.7
BDNFP23560 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.8□□□□□ -2.7
BDNFP23560 RNU6-226P-201ENST00000363778 107 ntBASIC-1.8□□□□□ -2.7
BDNFP23560 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.8□□□□□ -2.7
BDNFP23560 RNU6-787P-201ENST00000384032 107 ntBASIC-1.81□□□□□ -2.7
BDNFP23560 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.81□□□□□ -2.7
BDNFP23560 MIR3123-201ENST00000583417 75 ntBASIC-1.81□□□□□ -2.7
BDNFP23560 U7.4-201ENST00000614961 63 ntBASIC-1.81□□□□□ -2.7
BDNFP23560 SNORD60.1-201ENST00000362451 73 ntBASIC-1.82□□□□□ -2.7
BDNFP23560 RNU6-841P-201ENST00000383872 107 ntBASIC-1.82□□□□□ -2.7
BDNFP23560 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.82□□□□□ -2.7
BDNFP23560 MIR7110-201ENST00000612638 86 ntBASIC-1.82□□□□□ -2.7
BDNFP23560 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.83□□□□□ -2.7
BDNFP23560 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.83□□□□□ -2.7
BDNFP23560 AC005520.4-201ENST00000604337 90 ntBASIC-1.83□□□□□ -2.7
BDNFP23560 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.84□□□□□ -2.7
BDNFP23560 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.84□□□□□ -2.7
BDNFP23560 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.84□□□□□ -2.7
BDNFP23560 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.84□□□□□ -2.7
BDNFP23560 AC013734.1-201ENST00000619329 111 ntBASIC-1.84□□□□□ -2.7
BDNFP23560 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.85□□□□□ -2.71
BDNFP23560 RNU6-634P-201ENST00000459134 106 ntBASIC-1.85□□□□□ -2.71
BDNFP23560 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.86□□□□□ -2.71
BDNFP23560 RNU6-828P-201ENST00000364876 107 ntBASIC-1.86□□□□□ -2.71
BDNFP23560 MIR487B-201ENST00000385021 84 ntBASIC-1.86□□□□□ -2.71
BDNFP23560 RNU6-231P-201ENST00000517122 103 ntBASIC-1.86□□□□□ -2.71
BDNFP23560 MIR5582-201ENST00000579697 68 ntBASIC-1.86□□□□□ -2.71
BDNFP23560 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.87□□□□□ -2.71
BDNFP23560 RNU6-974P-201ENST00000384099 108 ntBASIC-1.87□□□□□ -2.71
BDNFP23560 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.87□□□□□ -2.71
BDNFP23560 RNU6-540P-201ENST00000384622 101 ntBASIC-1.87□□□□□ -2.71
BDNFP23560 RNU6-663P-201ENST00000391105 106 ntBASIC-1.87□□□□□ -2.71
BDNFP23560 U2.22-201ENST00000636441 106 ntBASIC-1.87□□□□□ -2.71
BDNFP23560 RNU6-119P-201ENST00000364882 107 ntBASIC-1.88□□□□□ -2.71
BDNFP23560 RNY3P8-201ENST00000411366 126 ntBASIC-1.88□□□□□ -2.71
BDNFP23560 MIR548AM-201ENST00000584298 74 ntBASIC-1.88□□□□□ -2.71
BDNFP23560 SNORD18.1-201ENST00000363807 70 ntBASIC-1.89□□□□□ -2.71
BDNFP23560 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.89□□□□□ -2.71
BDNFP23560 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.89□□□□□ -2.71
BDNFP23560 RNU6-810P-201ENST00000364001 107 ntBASIC-1.9□□□□□ -2.71
BDNFP23560 RNU6-520P-201ENST00000384717 104 ntBASIC-1.9□□□□□ -2.71
BDNFP23560 U6.97-201ENST00000636904 101 ntBASIC-1.9□□□□□ -2.71
BDNFP23560 RNU6-122P-201ENST00000516818 107 ntBASIC-1.91□□□□□ -2.72
BDNFP23560 AC062037.1-201ENST00000605302 128 ntBASIC-1.91□□□□□ -2.72
BDNFP23560 SNORA25.4-201ENST00000363666 124 ntBASIC-1.92□□□□□ -2.72
BDNFP23560 SNORA25.5-201ENST00000363782 126 ntBASIC-1.92□□□□□ -2.72
BDNFP23560 SNORD116.2-201ENST00000391251 93 ntBASIC-1.92□□□□□ -2.72
BDNFP23560 SNORD18C-201ENST00000362704 69 ntBASIC-1.93□□□□□ -2.72
BDNFP23560 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.93□□□□□ -2.72
BDNFP23560 SNORD60-201ENST00000383903 83 ntBASIC-1.94□□□□□ -2.72
BDNFP23560 SNORA40B-201ENST00000385573 128 ntBASIC-1.94□□□□□ -2.72
BDNFP23560 AC108019.1-201ENST00000512540 175 ntBASIC-1.94□□□□□ -2.72
BDNFP23560 MIR3202-2-201ENST00000635980 79 ntBASIC-1.95□□□□□ -2.72
BDNFP23560 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.96□□□□□ -2.72
BDNFP23560 RNU7-119P-201ENST00000459279 63 ntBASIC-1.96□□□□□ -2.72
BDNFP23560 RNU6-871P-201ENST00000516122 100 ntBASIC-1.96□□□□□ -2.72
BDNFP23560 RNU6-228P-201ENST00000362700 106 ntBASIC-1.97□□□□□ -2.72
BDNFP23560 SNORD30.1-201ENST00000391309 70 ntBASIC-1.97□□□□□ -2.72
BDNFP23560 RNU6-649P-201ENST00000384463 107 ntBASIC-1.98□□□□□ -2.73
BDNFP23560 RNU6-983P-201ENST00000516004 103 ntBASIC-1.98□□□□□ -2.73
BDNFP23560 MIR202-201ENST00000362219 110 ntBASIC-1.99□□□□□ -2.73
BDNFP23560 MIR548N-201ENST00000408742 75 ntBASIC-1.99□□□□□ -2.73
BDNFP23560 Y_RNA.81-201ENST00000362997 102 ntBASIC-2□□□□□ -2.73
BDNFP23560 SNORD45.2-201ENST00000363552 72 ntBASIC-2□□□□□ -2.73
BDNFP23560 RNU6-361P-201ENST00000364454 107 ntBASIC-2□□□□□ -2.73
BDNFP23560 RNU6-1247P-201ENST00000516622 98 ntBASIC-2□□□□□ -2.73
BDNFP23560 SNORA40.16-201ENST00000517238 121 ntBASIC-2□□□□□ -2.73
BDNFP23560 SNORA17.4-201ENST00000391287 132 ntBASIC-2.01□□□□□ -2.73
BDNFP23560 MIR4511-201ENST00000582784 87 ntBASIC-2.01□□□□□ -2.73
BDNFP23560 AC103706.3-201ENST00000636297 85 ntBASIC-2.01□□□□□ -2.73
BDNFP23560 RNU6-940P-201ENST00000363433 104 ntBASIC-2.02□□□□□ -2.73
BDNFP23560 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.02□□□□□ -2.73
BDNFP23560 MIR581-201ENST00000384895 96 ntBASIC-2.03□□□□□ -2.73
BDNFP23560 RNU4-88P-201ENST00000411220 86 ntBASIC-2.03□□□□□ -2.73
BDNFP23560 RNU6-539P-201ENST00000516665 103 ntBASIC-2.03□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 199.3 ms