Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AC120024.2-201ENST00000576526 175 ntBASIC-1.39□□□□□ -2.63
CTDNEP1O95476 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.4□□□□□ -2.63
CTDNEP1O95476 RNY4P29-201ENST00000410801 97 ntBASIC-1.4□□□□□ -2.63
CTDNEP1O95476 MIR3115-201ENST00000577915 68 ntBASIC-1.4□□□□□ -2.63
CTDNEP1O95476 MIR5591-201ENST00000578248 65 ntBASIC-1.4□□□□□ -2.63
CTDNEP1O95476 MIR3202-2-201ENST00000635980 79 ntBASIC-1.4□□□□□ -2.63
CTDNEP1O95476 MIR1255A-201ENST00000408338 113 ntBASIC-1.41□□□□□ -2.64
CTDNEP1O95476 RNA5SP266-201ENST00000410273 108 ntBASIC-1.41□□□□□ -2.64
CTDNEP1O95476 HLA-S-202ENST00000425174 53 ntBASIC-1.41□□□□□ -2.64
CTDNEP1O95476 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.42□□□□□ -2.64
CTDNEP1O95476 RNU6-857P-201ENST00000515893 110 ntBASIC-1.42□□□□□ -2.64
CTDNEP1O95476 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.42□□□□□ -2.64
CTDNEP1O95476 SNORA27.2-201ENST00000363365 126 ntBASIC-1.43□□□□□ -2.64
CTDNEP1O95476 RNA5SP192-201ENST00000364404 120 ntBASIC-1.43□□□□□ -2.64
CTDNEP1O95476 MIR4770-201ENST00000579149 58 ntBASIC-1.43□□□□□ -2.64
CTDNEP1O95476 AC005520.4-201ENST00000604337 90 ntBASIC-1.43□□□□□ -2.64
CTDNEP1O95476 MIR4320-201ENST00000636981 65 ntBASIC-1.43□□□□□ -2.64
CTDNEP1O95476 SNORA26.2-201ENST00000390922 122 ntBASIC-1.44□□□□□ -2.64
CTDNEP1O95476 RNU6-279P-201ENST00000391297 101 ntBASIC-1.44□□□□□ -2.64
CTDNEP1O95476 RNU6-231P-201ENST00000517122 103 ntBASIC-1.44□□□□□ -2.64
CTDNEP1O95476 MIR3165-201ENST00000579874 75 ntBASIC-1.44□□□□□ -2.64
CTDNEP1O95476 RNU6-1255P-201ENST00000363434 112 ntBASIC-1.45□□□□□ -2.64
CTDNEP1O95476 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.45□□□□□ -2.64
CTDNEP1O95476 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.46□□□□□ -2.64
CTDNEP1O95476 SNORA25.4-201ENST00000363666 124 ntBASIC-1.46□□□□□ -2.64
CTDNEP1O95476 MIR7110-201ENST00000612638 86 ntBASIC-1.46□□□□□ -2.64
CTDNEP1O95476 AC013734.1-201ENST00000619329 111 ntBASIC-1.46□□□□□ -2.64
CTDNEP1O95476 SNORA25.5-201ENST00000363782 126 ntBASIC-1.47□□□□□ -2.64
CTDNEP1O95476 RNU6-810P-201ENST00000364001 107 ntBASIC-1.47□□□□□ -2.64
CTDNEP1O95476 RNA5SP86-201ENST00000390869 98 ntBASIC-1.47□□□□□ -2.64
CTDNEP1O95476 SNORD30.1-201ENST00000391309 70 ntBASIC-1.47□□□□□ -2.64
CTDNEP1O95476 RNY3P8-201ENST00000411366 126 ntBASIC-1.48□□□□□ -2.65
CTDNEP1O95476 RNU7-160P-201ENST00000516660 62 ntBASIC-1.48□□□□□ -2.65
CTDNEP1O95476 RNU6-122P-201ENST00000516818 107 ntBASIC-1.48□□□□□ -2.65
CTDNEP1O95476 RNU6-695P-201ENST00000391157 104 ntBASIC-1.49□□□□□ -2.65
CTDNEP1O95476 MIR1468-201ENST00000410600 86 ntBASIC-1.49□□□□□ -2.65
CTDNEP1O95476 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.49□□□□□ -2.65
CTDNEP1O95476 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.49□□□□□ -2.65
CTDNEP1O95476 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.5□□□□□ -2.65
CTDNEP1O95476 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.5□□□□□ -2.65
CTDNEP1O95476 SNORD116.2-201ENST00000391251 93 ntBASIC-1.5□□□□□ -2.65
CTDNEP1O95476 RNA5SP225-201ENST00000410874 135 ntBASIC-1.5□□□□□ -2.65
CTDNEP1O95476 Y_RNA.43-201ENST00000362670 111 ntBASIC-1.51□□□□□ -2.65
CTDNEP1O95476 RNA5SP331-201ENST00000364986 107 ntBASIC-1.51□□□□□ -2.65
CTDNEP1O95476 SNORD78.1-201ENST00000390866 65 ntBASIC-1.51□□□□□ -2.65
CTDNEP1O95476 MIR548H1-201ENST00000408610 102 ntBASIC-1.52□□□□□ -2.65
CTDNEP1O95476 SNORA40.16-201ENST00000517238 121 ntBASIC-1.52□□□□□ -2.65
CTDNEP1O95476 AL627230.5-201ENST00000619807 58 ntBASIC-1.52□□□□□ -2.65
CTDNEP1O95476 U6.111-201ENST00000636093 83 ntBASIC-1.52□□□□□ -2.65
CTDNEP1O95476 RNU6-828P-201ENST00000364876 107 ntBASIC-1.53□□□□□ -2.65
CTDNEP1O95476 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.53□□□□□ -2.65
CTDNEP1O95476 RNU6-649P-201ENST00000384463 107 ntBASIC-1.53□□□□□ -2.65
CTDNEP1O95476 MIR487B-201ENST00000385021 84 ntBASIC-1.53□□□□□ -2.65
CTDNEP1O95476 SNORA40B-201ENST00000385573 128 ntBASIC-1.53□□□□□ -2.65
CTDNEP1O95476 RNU6-871P-201ENST00000516122 100 ntBASIC-1.53□□□□□ -2.65
CTDNEP1O95476 MIR4511-201ENST00000582784 87 ntBASIC-1.53□□□□□ -2.65
CTDNEP1O95476 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.54□□□□□ -2.66
CTDNEP1O95476 RNU6-226P-201ENST00000363778 107 ntBASIC-1.54□□□□□ -2.66
CTDNEP1O95476 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.54□□□□□ -2.66
CTDNEP1O95476 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.55□□□□□ -2.66
CTDNEP1O95476 MIR3123-201ENST00000583417 75 ntBASIC-1.55□□□□□ -2.66
CTDNEP1O95476 U6.97-201ENST00000636904 101 ntBASIC-1.55□□□□□ -2.66
CTDNEP1O95476 RNU6-520P-201ENST00000384717 104 ntBASIC-1.56□□□□□ -2.66
CTDNEP1O95476 RNU6-539P-201ENST00000516665 103 ntBASIC-1.56□□□□□ -2.66
CTDNEP1O95476 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.57□□□□□ -2.66
CTDNEP1O95476 SNX3P1X-201ENST00000414887 175 ntBASIC-1.57□□□□□ -2.66
CTDNEP1O95476 AC103706.3-201ENST00000636297 85 ntBASIC-1.57□□□□□ -2.66
CTDNEP1O95476 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.58□□□□□ -2.66
CTDNEP1O95476 MIR4679-1-201ENST00000637619 75 ntBASIC-1.59□□□□□ -2.66
CTDNEP1O95476 RNU6-800P-201ENST00000384473 103 ntBASIC-1.6□□□□□ -2.67
CTDNEP1O95476 MIR1302-4-201ENST00000408701 150 ntBASIC-1.6□□□□□ -2.67
CTDNEP1O95476 RNU6-940P-201ENST00000363433 104 ntBASIC-1.61□□□□□ -2.67
CTDNEP1O95476 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.61□□□□□ -2.67
CTDNEP1O95476 MIR581-201ENST00000384895 96 ntBASIC-1.61□□□□□ -2.67
CTDNEP1O95476 RNU7-119P-201ENST00000459279 63 ntBASIC-1.61□□□□□ -2.67
CTDNEP1O95476 MIR202-201ENST00000362219 110 ntBASIC-1.62□□□□□ -2.67
CTDNEP1O95476 RNU6-841P-201ENST00000383872 107 ntBASIC-1.62□□□□□ -2.67
CTDNEP1O95476 MIR466-201ENST00000580653 84 ntBASIC-1.62□□□□□ -2.67
CTDNEP1O95476 RNU6-776P-201ENST00000364403 104 ntBASIC-1.63□□□□□ -2.67
CTDNEP1O95476 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.63□□□□□ -2.67
CTDNEP1O95476 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.63□□□□□ -2.67
CTDNEP1O95476 MIR3938-201ENST00000582157 103 ntBASIC-1.63□□□□□ -2.67
CTDNEP1O95476 MIR548AM-201ENST00000584298 74 ntBASIC-1.63□□□□□ -2.67
CTDNEP1O95476 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.63□□□□□ -2.67
CTDNEP1O95476 MIR198-201ENST00000637333 62 ntBASIC-1.65□□□□□ -2.67
CTDNEP1O95476 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.66□□□□□ -2.68
CTDNEP1O95476 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.66□□□□□ -2.68
CTDNEP1O95476 RNU6-530P-201ENST00000391180 107 ntBASIC-1.66□□□□□ -2.68
CTDNEP1O95476 MIR548N-201ENST00000408742 75 ntBASIC-1.66□□□□□ -2.68
CTDNEP1O95476 AC110620.1-201ENST00000416042 228 ntBASIC-1.66□□□□□ -2.68
CTDNEP1O95476 RNA5SP461-201ENST00000516451 104 ntBASIC-1.66□□□□□ -2.68
CTDNEP1O95476 RNU6-361P-201ENST00000364454 107 ntBASIC-1.67□□□□□ -2.68
CTDNEP1O95476 MIR4662A-201ENST00000637499 67 ntBASIC-1.67□□□□□ -2.68
CTDNEP1O95476 SNORD18C-201ENST00000362704 69 ntBASIC-1.68□□□□□ -2.68
CTDNEP1O95476 SNORD18.1-201ENST00000363807 70 ntBASIC-1.68□□□□□ -2.68
CTDNEP1O95476 SNORD60-201ENST00000383903 83 ntBASIC-1.68□□□□□ -2.68
CTDNEP1O95476 MIR601-201ENST00000385256 79 ntBASIC-1.68□□□□□ -2.68
CTDNEP1O95476 SNORA17.4-201ENST00000391287 132 ntBASIC-1.68□□□□□ -2.68
CTDNEP1O95476 AL451105.1-201ENST00000450005 189 ntBASIC-1.68□□□□□ -2.68
CTDNEP1O95476 AC108019.1-201ENST00000512540 175 ntBASIC-1.68□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms