Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 SNORD54-201ENST00000459159 67 ntBASIC-1.79□□□□□ -2.7
USP42Q9H9J4 MIR630-201ENST00000384957 97 ntBASIC-1.8□□□□□ -2.7
USP42Q9H9J4 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.8□□□□□ -2.7
USP42Q9H9J4 MIR548W-201ENST00000581970 74 ntBASIC-1.8□□□□□ -2.7
USP42Q9H9J4 MIR4668-201ENST00000582284 70 ntBASIC-1.8□□□□□ -2.7
USP42Q9H9J4 RNU6-766P-201ENST00000362478 107 ntBASIC-1.81□□□□□ -2.7
USP42Q9H9J4 SNORD115-31-201ENST00000365318 82 ntBASIC-1.81□□□□□ -2.7
USP42Q9H9J4 SNORA19-201ENST00000384737 128 ntBASIC-1.81□□□□□ -2.7
USP42Q9H9J4 MIR548AA1-201ENST00000384971 97 ntBASIC-1.81□□□□□ -2.7
USP42Q9H9J4 RNU6-907P-201ENST00000390924 102 ntBASIC-1.81□□□□□ -2.7
USP42Q9H9J4 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.81□□□□□ -2.7
USP42Q9H9J4 AC013734.1-201ENST00000619329 111 ntBASIC-1.82□□□□□ -2.7
USP42Q9H9J4 RNU6-247P-201ENST00000362636 107 ntBASIC-1.83□□□□□ -2.7
USP42Q9H9J4 SNORD113-2-201ENST00000391082 72 ntBASIC-1.83□□□□□ -2.7
USP42Q9H9J4 AC074348.1-201ENST00000426503 132 ntBASIC-1.83□□□□□ -2.7
USP42Q9H9J4 RNU6-557P-201ENST00000516842 110 ntBASIC-1.83□□□□□ -2.7
USP42Q9H9J4 MIR4748-201ENST00000578076 82 ntBASIC-1.83□□□□□ -2.7
USP42Q9H9J4 RNU6-686P-201ENST00000364839 107 ntBASIC-1.84□□□□□ -2.7
USP42Q9H9J4 MT-TM-201ENST00000387377 68 ntBASIC-1.84□□□□□ -2.7
USP42Q9H9J4 MTND4LP1-201ENST00000446263 157 ntBASIC-1.84□□□□□ -2.7
USP42Q9H9J4 snoU13.10-201ENST00000459301 103 ntBASIC-1.84□□□□□ -2.7
USP42Q9H9J4 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.84□□□□□ -2.7
USP42Q9H9J4 RNA5SP93-201ENST00000362525 114 ntBASIC-1.85□□□□□ -2.71
USP42Q9H9J4 MIR466-201ENST00000580653 84 ntBASIC-1.85□□□□□ -2.71
USP42Q9H9J4 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.85□□□□□ -2.71
USP42Q9H9J4 AC005520.4-201ENST00000604337 90 ntBASIC-1.85□□□□□ -2.71
USP42Q9H9J4 RNY4P7-201ENST00000364600 96 ntBASIC-1.86□□□□□ -2.71
USP42Q9H9J4 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.86□□□□□ -2.71
USP42Q9H9J4 SNORD116-16-201ENST00000384533 92 ntBASIC-1.86□□□□□ -2.71
USP42Q9H9J4 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.86□□□□□ -2.71
USP42Q9H9J4 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.86□□□□□ -2.71
USP42Q9H9J4 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.86□□□□□ -2.71
USP42Q9H9J4 RNA5SP215-201ENST00000363440 122 ntBASIC-1.87□□□□□ -2.71
USP42Q9H9J4 RNU6-668P-201ENST00000364180 107 ntBASIC-1.87□□□□□ -2.71
USP42Q9H9J4 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.87□□□□□ -2.71
USP42Q9H9J4 Y_RNA.261-201ENST00000364631 102 ntBASIC-1.88□□□□□ -2.71
USP42Q9H9J4 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.88□□□□□ -2.71
USP42Q9H9J4 RNU6-1081P-201ENST00000384537 107 ntBASIC-1.88□□□□□ -2.71
USP42Q9H9J4 Y_RNA.544-201ENST00000384650 113 ntBASIC-1.88□□□□□ -2.71
USP42Q9H9J4 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.88□□□□□ -2.71
USP42Q9H9J4 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.89□□□□□ -2.71
USP42Q9H9J4 RNU6-497P-201ENST00000365316 104 ntBASIC-1.89□□□□□ -2.71
USP42Q9H9J4 SNORD116-22-201ENST00000384430 92 ntBASIC-1.89□□□□□ -2.71
USP42Q9H9J4 MIR4484-201ENST00000582855 83 ntBASIC-1.89□□□□□ -2.71
USP42Q9H9J4 SNORD1B-201ENST00000363091 84 ntBASIC-1.9□□□□□ -2.71
USP42Q9H9J4 SNORA41B-201ENST00000384785 128 ntBASIC-1.9□□□□□ -2.71
USP42Q9H9J4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.9□□□□□ -2.71
USP42Q9H9J4 RNU6-995P-201ENST00000391244 107 ntBASIC-1.9□□□□□ -2.71
USP42Q9H9J4 FTX_4.1-201ENST00000616291 147 ntBASIC-1.9□□□□□ -2.71
USP42Q9H9J4 MIR548BB-201ENST00000626714 66 ntBASIC-1.9□□□□□ -2.71
USP42Q9H9J4 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-1.9□□□□□ -2.71
USP42Q9H9J4 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.91□□□□□ -2.71
USP42Q9H9J4 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.91□□□□□ -2.71
USP42Q9H9J4 RNU6-219P-201ENST00000364728 107 ntBASIC-1.91□□□□□ -2.71
USP42Q9H9J4 RNU6-129P-201ENST00000391022 107 ntBASIC-1.91□□□□□ -2.71
USP42Q9H9J4 RNU6-267P-201ENST00000516714 103 ntBASIC-1.91□□□□□ -2.71
USP42Q9H9J4 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.91□□□□□ -2.71
USP42Q9H9J4 MIR2052-201ENST00000636055 55 ntBASIC-1.91□□□□□ -2.71
USP42Q9H9J4 SNORD113.1-201ENST00000363280 73 ntBASIC-1.91□□□□□ -2.72
USP42Q9H9J4 RNA5SP173-201ENST00000364857 136 ntBASIC-1.91□□□□□ -2.72
USP42Q9H9J4 RNY4P18-201ENST00000391107 89 ntBASIC-1.91□□□□□ -2.72
USP42Q9H9J4 RNU6-402P-201ENST00000410678 103 ntBASIC-1.91□□□□□ -2.72
USP42Q9H9J4 RNU7-151P-201ENST00000516930 53 ntBASIC-1.91□□□□□ -2.72
USP42Q9H9J4 U6.97-201ENST00000636904 101 ntBASIC-1.91□□□□□ -2.72
USP42Q9H9J4 SNORA27.2-201ENST00000363365 126 ntBASIC-1.92□□□□□ -2.72
USP42Q9H9J4 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.92□□□□□ -2.72
USP42Q9H9J4 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.92□□□□□ -2.72
USP42Q9H9J4 SNORD63.2-201ENST00000516303 64 ntBASIC-1.92□□□□□ -2.72
USP42Q9H9J4 MIR8053-201ENST00000613344 75 ntBASIC-1.92□□□□□ -2.72
USP42Q9H9J4 MIR1297-201ENST00000637311 77 ntBASIC-1.92□□□□□ -2.72
USP42Q9H9J4 AC099654.10-201ENST00000640395 161 ntBASIC-1.93□□□□□ -2.72
USP42Q9H9J4 MIR579-201ENST00000385221 98 ntBASIC-1.94□□□□□ -2.72
USP42Q9H9J4 RNY3P8-201ENST00000411366 126 ntBASIC-1.94□□□□□ -2.72
USP42Q9H9J4 AC097484.2-201ENST00000509147 251 ntBASIC-1.94□□□□□ -2.72
USP42Q9H9J4 RNU6-669P-201ENST00000365575 107 ntBASIC-1.95□□□□□ -2.72
USP42Q9H9J4 SNORD45A-201ENST00000384512 84 ntBASIC-1.95□□□□□ -2.72
USP42Q9H9J4 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.95□□□□□ -2.72
USP42Q9H9J4 RNU6-589P-201ENST00000516485 107 ntBASIC-1.95□□□□□ -2.72
USP42Q9H9J4 SNORD18C-201ENST00000362704 69 ntBASIC-1.96□□□□□ -2.72
USP42Q9H9J4 MIR581-201ENST00000384895 96 ntBASIC-1.96□□□□□ -2.72
USP42Q9H9J4 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.97□□□□□ -2.73
USP42Q9H9J4 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.97□□□□□ -2.73
USP42Q9H9J4 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.97□□□□□ -2.73
USP42Q9H9J4 RNU6-380P-201ENST00000410207 107 ntBASIC-1.97□□□□□ -2.73
USP42Q9H9J4 RNU6-172P-201ENST00000411000 93 ntBASIC-1.97□□□□□ -2.73
USP42Q9H9J4 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-1.97□□□□□ -2.73
USP42Q9H9J4 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.98□□□□□ -2.73
USP42Q9H9J4 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.98□□□□□ -2.73
USP42Q9H9J4 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.98□□□□□ -2.73
USP42Q9H9J4 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.98□□□□□ -2.73
USP42Q9H9J4 MALAT1.1-201ENST00000618249 95 ntBASIC-1.98□□□□□ -2.73
USP42Q9H9J4 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.98□□□□□ -2.73
USP42Q9H9J4 MIR7978-201ENST00000636158 59 ntBASIC-1.98□□□□□ -2.73
USP42Q9H9J4 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.98□□□□□ -2.73
USP42Q9H9J4 SNORA63.4-201ENST00000362763 126 ntBASIC-1.99□□□□□ -2.73
USP42Q9H9J4 RNU6-755P-201ENST00000364400 103 ntBASIC-1.99□□□□□ -2.73
USP42Q9H9J4 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.99□□□□□ -2.73
USP42Q9H9J4 RNU6-959P-201ENST00000384671 107 ntBASIC-1.99□□□□□ -2.73
USP42Q9H9J4 MIR125B1-201ENST00000385236 88 ntBASIC-1.99□□□□□ -2.73
USP42Q9H9J4 RNU6-523P-201ENST00000516304 54 ntBASIC-1.99□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 141.2 ms