Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RNY4P18-201ENST00000391107 89 ntBASIC-1.94□□□□□ -2.72
CHMP4AQ9BY43 RNU6-402P-201ENST00000410678 103 ntBASIC-1.94□□□□□ -2.72
CHMP4AQ9BY43 RNA5SP180-201ENST00000516181 101 ntBASIC-1.94□□□□□ -2.72
CHMP4AQ9BY43 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.95□□□□□ -2.72
CHMP4AQ9BY43 U2.7-201ENST00000619197 100 ntBASIC-1.95□□□□□ -2.72
CHMP4AQ9BY43 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.96□□□□□ -2.72
CHMP4AQ9BY43 RNU2-51P-201ENST00000410708 197 ntBASIC-1.96□□□□□ -2.72
CHMP4AQ9BY43 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.96□□□□□ -2.72
CHMP4AQ9BY43 MIR6818-201ENST00000621576 65 ntBASIC-1.96□□□□□ -2.72
CHMP4AQ9BY43 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.97□□□□□ -2.72
CHMP4AQ9BY43 RNU7-134P-201ENST00000458997 64 ntBASIC-1.97□□□□□ -2.72
CHMP4AQ9BY43 RNU6-267P-201ENST00000516714 103 ntBASIC-1.97□□□□□ -2.72
CHMP4AQ9BY43 RNU6-807P-201ENST00000516805 107 ntBASIC-1.97□□□□□ -2.72
CHMP4AQ9BY43 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.97□□□□□ -2.72
CHMP4AQ9BY43 RNU6-219P-201ENST00000364728 107 ntBASIC-1.98□□□□□ -2.73
CHMP4AQ9BY43 AL353691.2-201ENST00000443795 59 ntBASIC-1.98□□□□□ -2.73
CHMP4AQ9BY43 RNU7-88P-201ENST00000458752 63 ntBASIC-1.98□□□□□ -2.73
CHMP4AQ9BY43 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.98□□□□□ -2.73
CHMP4AQ9BY43 MIR3910-1-201ENST00000580936 111 ntBASIC-1.98□□□□□ -2.73
CHMP4AQ9BY43 MIR3675-201ENST00000583661 73 ntBASIC-1.99□□□□□ -2.73
CHMP4AQ9BY43 MIR548BB-201ENST00000626714 66 ntBASIC-1.99□□□□□ -2.73
CHMP4AQ9BY43 SNORD115-22-201ENST00000364456 82 ntBASIC-2□□□□□ -2.73
CHMP4AQ9BY43 RNU6-303P-201ENST00000517091 106 ntBASIC-2□□□□□ -2.73
CHMP4AQ9BY43 RNU6-330P-201ENST00000363015 107 ntBASIC-2.01□□□□□ -2.73
CHMP4AQ9BY43 MIR548AG1-201ENST00000579932 66 ntBASIC-2.01□□□□□ -2.73
CHMP4AQ9BY43 MIR4441-201ENST00000582623 100 ntBASIC-2.01□□□□□ -2.73
CHMP4AQ9BY43 SNORA8.1-201ENST00000384250 140 ntBASIC-2.02□□□□□ -2.73
CHMP4AQ9BY43 Y_RNA.611-201ENST00000410682 108 ntBASIC-2.02□□□□□ -2.73
CHMP4AQ9BY43 RNU6-732P-201ENST00000516033 103 ntBASIC-2.02□□□□□ -2.73
CHMP4AQ9BY43 RNU6-557P-201ENST00000516842 110 ntBASIC-2.02□□□□□ -2.73
CHMP4AQ9BY43 AC138207.3-201ENST00000585289 166 ntBASIC-2.02□□□□□ -2.73
CHMP4AQ9BY43 RNU6-686P-201ENST00000364839 107 ntBASIC-2.03□□□□□ -2.73
CHMP4AQ9BY43 SNORD114-3-201ENST00000364969 75 ntBASIC-2.03□□□□□ -2.73
CHMP4AQ9BY43 MIR1207-201ENST00000408249 87 ntBASIC-2.03□□□□□ -2.73
CHMP4AQ9BY43 RNU4-61P-201ENST00000411243 107 ntBASIC-2.03□□□□□ -2.73
CHMP4AQ9BY43 U7.5-201ENST00000517224 61 ntBASIC-2.03□□□□□ -2.73
CHMP4AQ9BY43 RNU6-706P-201ENST00000517229 104 ntBASIC-2.04□□□□□ -2.74
CHMP4AQ9BY43 Y_RNA.348-201ENST00000365403 103 ntBASIC-2.05□□□□□ -2.74
CHMP4AQ9BY43 MIR507-201ENST00000385234 94 ntBASIC-2.06□□□□□ -2.74
CHMP4AQ9BY43 RNU6-604P-201ENST00000390917 100 ntBASIC-2.06□□□□□ -2.74
CHMP4AQ9BY43 RNU6-246P-201ENST00000384702 107 ntBASIC-2.07□□□□□ -2.74
CHMP4AQ9BY43 MIR527-201ENST00000385244 85 ntBASIC-2.07□□□□□ -2.74
CHMP4AQ9BY43 RNU6-576P-201ENST00000390854 102 ntBASIC-2.07□□□□□ -2.74
CHMP4AQ9BY43 RNA5SP26-201ENST00000362406 119 ntBASIC-2.08□□□□□ -2.74
CHMP4AQ9BY43 RNU6-32P-201ENST00000383948 107 ntBASIC-2.08□□□□□ -2.74
CHMP4AQ9BY43 RNU6-13P-201ENST00000384248 107 ntBASIC-2.08□□□□□ -2.74
CHMP4AQ9BY43 RNU6-12P-201ENST00000384604 107 ntBASIC-2.08□□□□□ -2.74
CHMP4AQ9BY43 RNU6-41P-201ENST00000384741 107 ntBASIC-2.08□□□□□ -2.74
CHMP4AQ9BY43 RNU6-129P-201ENST00000391022 107 ntBASIC-2.08□□□□□ -2.74
CHMP4AQ9BY43 SNORD45.1-201ENST00000363181 77 ntBASIC-2.09□□□□□ -2.74
CHMP4AQ9BY43 Y_RNA.55-201ENST00000362797 102 ntBASIC-2.1□□□□□ -2.75
CHMP4AQ9BY43 RNU6-755P-201ENST00000364400 103 ntBASIC-2.1□□□□□ -2.75
CHMP4AQ9BY43 RNU6-497P-201ENST00000365316 104 ntBASIC-2.1□□□□□ -2.75
CHMP4AQ9BY43 MIR488-201ENST00000365739 83 ntBASIC-2.1□□□□□ -2.75
CHMP4AQ9BY43 SNORA63.4-201ENST00000362763 126 ntBASIC-2.11□□□□□ -2.75
CHMP4AQ9BY43 MIRLET7A1-201ENST00000362295 80 ntBASIC-2.12□□□□□ -2.75
CHMP4AQ9BY43 RNU6-478P-201ENST00000363904 110 ntBASIC-2.12□□□□□ -2.75
CHMP4AQ9BY43 Y_RNA.629-201ENST00000411368 105 ntBASIC-2.12□□□□□ -2.75
CHMP4AQ9BY43 AC074348.1-201ENST00000426503 132 ntBASIC-2.12□□□□□ -2.75
CHMP4AQ9BY43 RNU6-982P-201ENST00000516216 102 ntBASIC-2.12□□□□□ -2.75
CHMP4AQ9BY43 MIR4490-201ENST00000582647 84 ntBASIC-2.12□□□□□ -2.75
CHMP4AQ9BY43 Y_RNA.236-201ENST00000364427 111 ntBASIC-2.13□□□□□ -2.75
CHMP4AQ9BY43 RNU6-1089P-201ENST00000516473 104 ntBASIC-2.13□□□□□ -2.75
CHMP4AQ9BY43 MIR4484-201ENST00000582855 83 ntBASIC-2.13□□□□□ -2.75
CHMP4AQ9BY43 MIR8485-201ENST00000401372 91 ntBASIC-2.14□□□□□ -2.75
CHMP4AQ9BY43 RNU6-1174P-201ENST00000517278 101 ntBASIC-2.14□□□□□ -2.75
CHMP4AQ9BY43 MIR5683-201ENST00000636514 76 ntBASIC-2.14□□□□□ -2.75
CHMP4AQ9BY43 MIR548Q-201ENST00000408404 100 ntBASIC-2.15□□□□□ -2.75
CHMP4AQ9BY43 AL606753.1-201ENST00000427435 87 ntBASIC-2.15□□□□□ -2.75
CHMP4AQ9BY43 RNU7-174P-201ENST00000516248 59 ntBASIC-2.15□□□□□ -2.75
CHMP4AQ9BY43 AC006160.2-201ENST00000637708 154 ntBASIC-2.15□□□□□ -2.75
CHMP4AQ9BY43 RNU6-640P-201ENST00000363693 105 ntBASIC-2.16□□□□□ -2.76
CHMP4AQ9BY43 SNORD19-201ENST00000391191 68 ntBASIC-2.16□□□□□ -2.76
CHMP4AQ9BY43 RNU6-380P-201ENST00000410207 107 ntBASIC-2.16□□□□□ -2.76
CHMP4AQ9BY43 RNU6-844P-201ENST00000517175 102 ntBASIC-2.16□□□□□ -2.76
CHMP4AQ9BY43 RNU6-458P-201ENST00000384179 107 ntBASIC-2.17□□□□□ -2.76
CHMP4AQ9BY43 U6.58-201ENST00000613107 107 ntBASIC-2.17□□□□□ -2.76
CHMP4AQ9BY43 MIR1246-201ENST00000636535 73 ntBASIC-2.17□□□□□ -2.76
CHMP4AQ9BY43 Y_RNA.219-201ENST00000364232 113 ntBASIC-2.18□□□□□ -2.76
CHMP4AQ9BY43 RNU6-147P-201ENST00000383983 107 ntBASIC-2.18□□□□□ -2.76
CHMP4AQ9BY43 RNU6-164P-201ENST00000364604 103 ntBASIC-2.19□□□□□ -2.76
CHMP4AQ9BY43 SNORD113-1-201ENST00000365321 69 ntBASIC-2.19□□□□□ -2.76
CHMP4AQ9BY43 RNU6-675P-201ENST00000384236 104 ntBASIC-2.19□□□□□ -2.76
CHMP4AQ9BY43 Y_RNA.532-201ENST00000384590 113 ntBASIC-2.19□□□□□ -2.76
CHMP4AQ9BY43 MIR889-201ENST00000401280 79 ntBASIC-2.19□□□□□ -2.76
CHMP4AQ9BY43 AP002795.1-201ENST00000534879 84 ntBASIC-2.19□□□□□ -2.76
CHMP4AQ9BY43 MIR1297-201ENST00000637311 77 ntBASIC-2.19□□□□□ -2.76
CHMP4AQ9BY43 Y_RNA.74-201ENST00000362911 99 ntBASIC-2.2□□□□□ -2.76
CHMP4AQ9BY43 RNU6-1134P-201ENST00000365156 101 ntBASIC-2.2□□□□□ -2.76
CHMP4AQ9BY43 Y_RNA.616-201ENST00000410835 95 ntBASIC-2.2□□□□□ -2.76
CHMP4AQ9BY43 AC091912.2-201ENST00000624798 167 ntBASIC-2.2□□□□□ -2.76
CHMP4AQ9BY43 MIR429-201ENST00000362106 83 ntBASIC-2.21□□□□□ -2.76
CHMP4AQ9BY43 MIR6502-201ENST00000617296 76 ntBASIC-2.21□□□□□ -2.76
CHMP4AQ9BY43 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-2.22□□□□□ -2.76
CHMP4AQ9BY43 MTND4LP1-201ENST00000446263 157 ntBASIC-2.22□□□□□ -2.76
CHMP4AQ9BY43 Y_RNA.325-201ENST00000365171 122 ntBASIC-2.23□□□□□ -2.77
CHMP4AQ9BY43 Y_RNA.17-201ENST00000362433 111 ntBASIC-2.24□□□□□ -2.77
CHMP4AQ9BY43 RNU6-1081P-201ENST00000384537 107 ntBASIC-2.24□□□□□ -2.77
CHMP4AQ9BY43 SNORD20-201ENST00000384550 80 ntBASIC-2.24□□□□□ -2.77
CHMP4AQ9BY43 RPL35AP4-201ENST00000412007 102 ntBASIC-2.24□□□□□ -2.77
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms