Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNU6-924P-201ENST00000362926 108 ntBASIC-0.91□□□□□ -2.56
CCDC3Q9BQI4 SNORD114-17-201ENST00000364699 75 ntBASIC-0.91□□□□□ -2.56
CCDC3Q9BQI4 RNY1P1-201ENST00000364372 112 ntBASIC-0.92□□□□□ -2.56
CCDC3Q9BQI4 RNU6-645P-201ENST00000364649 106 ntBASIC-0.92□□□□□ -2.56
CCDC3Q9BQI4 RNU6-979P-201ENST00000383896 107 ntBASIC-0.92□□□□□ -2.56
CCDC3Q9BQI4 MIR5588-201ENST00000581890 63 ntBASIC-0.92□□□□□ -2.56
CCDC3Q9BQI4 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.93□□□□□ -2.56
CCDC3Q9BQI4 U2.7-201ENST00000619197 100 ntBASIC-0.93□□□□□ -2.56
CCDC3Q9BQI4 RNU6-330P-201ENST00000363015 107 ntBASIC-0.94□□□□□ -2.56
CCDC3Q9BQI4 RNU6-431P-201ENST00000383874 107 ntBASIC-0.94□□□□□ -2.56
CCDC3Q9BQI4 SNORA8.1-201ENST00000384250 140 ntBASIC-0.94□□□□□ -2.56
CCDC3Q9BQI4 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.94□□□□□ -2.56
CCDC3Q9BQI4 SNORD64-201ENST00000386683 67 ntBASIC-0.94□□□□□ -2.56
CCDC3Q9BQI4 MIR196A1-201ENST00000388006 70 ntBASIC-0.94□□□□□ -2.56
CCDC3Q9BQI4 RNU7-171P-201ENST00000459581 62 ntBASIC-0.94□□□□□ -2.56
CCDC3Q9BQI4 RNU6-518P-201ENST00000516056 96 ntBASIC-0.94□□□□□ -2.56
CCDC3Q9BQI4 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.94□□□□□ -2.56
CCDC3Q9BQI4 Y_RNA.81-201ENST00000362997 102 ntBASIC-0.95□□□□□ -2.56
CCDC3Q9BQI4 RNA5SP266-201ENST00000410273 108 ntBASIC-0.96□□□□□ -2.56
CCDC3Q9BQI4 AL500527.2-201ENST00000454105 95 ntBASIC-0.96□□□□□ -2.56
CCDC3Q9BQI4 MIR147A-201ENST00000385079 72 ntBASIC-0.97□□□□□ -2.56
CCDC3Q9BQI4 RNY4P30-201ENST00000410216 95 ntBASIC-0.98□□□□□ -2.57
CCDC3Q9BQI4 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.99□□□□□ -2.57
CCDC3Q9BQI4 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.99□□□□□ -2.57
CCDC3Q9BQI4 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.99□□□□□ -2.57
CCDC3Q9BQI4 MIR8053-201ENST00000613344 75 ntBASIC-0.99□□□□□ -2.57
CCDC3Q9BQI4 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-0.99□□□□□ -2.57
CCDC3Q9BQI4 Y_RNA.73-201ENST00000362910 113 ntBASIC-1□□□□□ -2.57
CCDC3Q9BQI4 SNORD45.1-201ENST00000363181 77 ntBASIC-1□□□□□ -2.57
CCDC3Q9BQI4 Y_RNA.219-201ENST00000364232 113 ntBASIC-1□□□□□ -2.57
CCDC3Q9BQI4 Y_RNA.313-201ENST00000365095 103 ntBASIC-1□□□□□ -2.57
CCDC3Q9BQI4 MIR450A2-201ENST00000385022 100 ntBASIC-1□□□□□ -2.57
CCDC3Q9BQI4 SNORD83B-201ENST00000386745 93 ntBASIC-1□□□□□ -2.57
CCDC3Q9BQI4 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1□□□□□ -2.57
CCDC3Q9BQI4 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.01□□□□□ -2.57
CCDC3Q9BQI4 RNU6-604P-201ENST00000390917 100 ntBASIC-1.01□□□□□ -2.57
CCDC3Q9BQI4 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.01□□□□□ -2.57
CCDC3Q9BQI4 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.01□□□□□ -2.57
CCDC3Q9BQI4 MIR382-201ENST00000637119 76 ntBASIC-1.01□□□□□ -2.57
CCDC3Q9BQI4 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.02□□□□□ -2.57
CCDC3Q9BQI4 RNY1P9-201ENST00000532431 109 ntBASIC-1.02□□□□□ -2.57
CCDC3Q9BQI4 MIR548AG1-201ENST00000579932 66 ntBASIC-1.02□□□□□ -2.57
CCDC3Q9BQI4 SNORD115-33-201ENST00000363723 82 ntBASIC-1.03□□□□□ -2.57
CCDC3Q9BQI4 Y_RNA.246-201ENST00000364495 108 ntBASIC-1.03□□□□□ -2.57
CCDC3Q9BQI4 RNU6-294P-201ENST00000364999 102 ntBASIC-1.03□□□□□ -2.57
CCDC3Q9BQI4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.03□□□□□ -2.57
CCDC3Q9BQI4 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.03□□□□□ -2.57
CCDC3Q9BQI4 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.03□□□□□ -2.57
CCDC3Q9BQI4 MIR1245B-201ENST00000636115 69 ntBASIC-1.03□□□□□ -2.57
CCDC3Q9BQI4 MIR548C-201ENST00000384815 97 ntBASIC-1.04□□□□□ -2.58
CCDC3Q9BQI4 RNU7-174P-201ENST00000516248 59 ntBASIC-1.04□□□□□ -2.58
CCDC3Q9BQI4 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.05□□□□□ -2.58
CCDC3Q9BQI4 RNU6-820P-201ENST00000384273 107 ntBASIC-1.05□□□□□ -2.58
CCDC3Q9BQI4 SNORA26.4-201ENST00000391188 123 ntBASIC-1.05□□□□□ -2.58
CCDC3Q9BQI4 SNORD57-201ENST00000448188 72 ntBASIC-1.05□□□□□ -2.58
CCDC3Q9BQI4 SNORD63.1-201ENST00000516178 80 ntBASIC-1.05□□□□□ -2.58
CCDC3Q9BQI4 uc_338.19-201ENST00000616808 99 ntBASIC-1.05□□□□□ -2.58
CCDC3Q9BQI4 SNORD115-22-201ENST00000364456 82 ntBASIC-1.06□□□□□ -2.58
CCDC3Q9BQI4 RNU6-242P-201ENST00000384359 107 ntBASIC-1.06□□□□□ -2.58
CCDC3Q9BQI4 MTND4LP1-201ENST00000446263 157 ntBASIC-1.06□□□□□ -2.58
CCDC3Q9BQI4 snoU83B.1-201ENST00000517136 88 ntBASIC-1.06□□□□□ -2.58
CCDC3Q9BQI4 MIR4666B-201ENST00000578142 81 ntBASIC-1.06□□□□□ -2.58
CCDC3Q9BQI4 MIR4484-201ENST00000582855 83 ntBASIC-1.06□□□□□ -2.58
CCDC3Q9BQI4 MIR4499-201ENST00000584834 69 ntBASIC-1.06□□□□□ -2.58
CCDC3Q9BQI4 RNU6-982P-201ENST00000516216 102 ntBASIC-1.07□□□□□ -2.58
CCDC3Q9BQI4 MIR4712-201ENST00000583750 82 ntBASIC-1.07□□□□□ -2.58
CCDC3Q9BQI4 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.08□□□□□ -2.58
CCDC3Q9BQI4 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.08□□□□□ -2.58
CCDC3Q9BQI4 RNA5SP215-201ENST00000363440 122 ntBASIC-1.08□□□□□ -2.58
CCDC3Q9BQI4 SCARNA18B-201ENST00000458806 135 ntBASIC-1.08□□□□□ -2.58
CCDC3Q9BQI4 MIR5582-201ENST00000579697 68 ntBASIC-1.08□□□□□ -2.58
CCDC3Q9BQI4 RNU6-698P-201ENST00000363523 107 ntBASIC-1.09□□□□□ -2.58
CCDC3Q9BQI4 RNU6-34P-201ENST00000364874 107 ntBASIC-1.09□□□□□ -2.58
CCDC3Q9BQI4 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.09□□□□□ -2.58
CCDC3Q9BQI4 RNU7-88P-201ENST00000458752 63 ntBASIC-1.09□□□□□ -2.58
CCDC3Q9BQI4 RNU6-246P-201ENST00000384702 107 ntBASIC-1.11□□□□□ -2.59
CCDC3Q9BQI4 RNU6-587P-201ENST00000391282 106 ntBASIC-1.11□□□□□ -2.59
CCDC3Q9BQI4 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.11□□□□□ -2.59
CCDC3Q9BQI4 U7.5-201ENST00000517224 61 ntBASIC-1.11□□□□□ -2.59
CCDC3Q9BQI4 SNORD113.1-201ENST00000363280 73 ntBASIC-1.12□□□□□ -2.59
CCDC3Q9BQI4 MIR494-201ENST00000349529 81 ntBASIC-1.13□□□□□ -2.59
CCDC3Q9BQI4 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.13□□□□□ -2.59
CCDC3Q9BQI4 RNU6-732P-201ENST00000516033 103 ntBASIC-1.13□□□□□ -2.59
CCDC3Q9BQI4 RNU6-668P-201ENST00000364180 107 ntBASIC-1.14□□□□□ -2.59
CCDC3Q9BQI4 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.14□□□□□ -2.59
CCDC3Q9BQI4 MIR429-201ENST00000362106 83 ntBASIC-1.15□□□□□ -2.59
CCDC3Q9BQI4 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.15□□□□□ -2.59
CCDC3Q9BQI4 AL353691.2-201ENST00000443795 59 ntBASIC-1.15□□□□□ -2.59
CCDC3Q9BQI4 MIR587-201ENST00000384845 96 ntBASIC-1.16□□□□□ -2.6
CCDC3Q9BQI4 MIR29B1-201ENST00000385015 81 ntBASIC-1.16□□□□□ -2.6
CCDC3Q9BQI4 MIR6738-201ENST00000619620 64 ntBASIC-1.16□□□□□ -2.6
CCDC3Q9BQI4 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.17□□□□□ -2.6
CCDC3Q9BQI4 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.17□□□□□ -2.6
CCDC3Q9BQI4 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.17□□□□□ -2.6
CCDC3Q9BQI4 MIR548V-201ENST00000584165 80 ntBASIC-1.17□□□□□ -2.6
CCDC3Q9BQI4 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.18□□□□□ -2.6
CCDC3Q9BQI4 SNORD19-201ENST00000391191 68 ntBASIC-1.18□□□□□ -2.6
CCDC3Q9BQI4 SNX3P1X-201ENST00000414887 175 ntBASIC-1.18□□□□□ -2.6
CCDC3Q9BQI4 SCARNA17-201ENST00000516183 144 ntBASIC-1.18□□□□□ -2.6
CCDC3Q9BQI4 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.18□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 181.3 ms