Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.62□□□□□ -2.51
PDLIM3Q53GG5 MIR494-201ENST00000349529 81 ntBASIC-0.63□□□□□ -2.51
PDLIM3Q53GG5 Y_RNA.204-201ENST00000364112 102 ntBASIC-0.63□□□□□ -2.51
PDLIM3Q53GG5 SNORD115-23-201ENST00000364461 82 ntBASIC-0.63□□□□□ -2.51
PDLIM3Q53GG5 MIR521-2-201ENST00000384818 87 ntBASIC-0.63□□□□□ -2.51
PDLIM3Q53GG5 AL353803.5-201ENST00000599815 141 ntBASIC-0.63□□□□□ -2.51
PDLIM3Q53GG5 Y_RNA.475-201ENST00000384345 101 ntBASIC-0.64□□□□□ -2.51
PDLIM3Q53GG5 MIR124-2-201ENST00000385081 109 ntBASIC-0.64□□□□□ -2.51
PDLIM3Q53GG5 MIR518B-201ENST00000385127 83 ntBASIC-0.64□□□□□ -2.51
PDLIM3Q53GG5 RNU6-721P-201ENST00000410155 105 ntBASIC-0.64□□□□□ -2.51
PDLIM3Q53GG5 SNORD22.1-201ENST00000516331 125 ntBASIC-0.64□□□□□ -2.51
PDLIM3Q53GG5 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.65□□□□□ -2.51
PDLIM3Q53GG5 SNORA8.1-201ENST00000384250 140 ntBASIC-0.65□□□□□ -2.51
PDLIM3Q53GG5 MIR548C-201ENST00000384815 97 ntBASIC-0.65□□□□□ -2.51
PDLIM3Q53GG5 AC021146.6-201ENST00000514659 117 ntBASIC-0.65□□□□□ -2.51
PDLIM3Q53GG5 RNU6-303P-201ENST00000517091 106 ntBASIC-0.65□□□□□ -2.51
PDLIM3Q53GG5 MIR3115-201ENST00000577915 68 ntBASIC-0.65□□□□□ -2.51
PDLIM3Q53GG5 MIR3179-1-201ENST00000578940 84 ntBASIC-0.65□□□□□ -2.51
PDLIM3Q53GG5 MIR3179-2-201ENST00000579107 84 ntBASIC-0.65□□□□□ -2.51
PDLIM3Q53GG5 MIR3179-3-201ENST00000579566 84 ntBASIC-0.65□□□□□ -2.51
PDLIM3Q53GG5 MIR3179-4-201ENST00000617599 84 ntBASIC-0.65□□□□□ -2.51
PDLIM3Q53GG5 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.66□□□□□ -2.52
PDLIM3Q53GG5 RNU6-557P-201ENST00000516842 110 ntBASIC-0.66□□□□□ -2.52
PDLIM3Q53GG5 MIR5588-201ENST00000581890 63 ntBASIC-0.66□□□□□ -2.52
PDLIM3Q53GG5 MIR3675-201ENST00000583661 73 ntBASIC-0.66□□□□□ -2.52
PDLIM3Q53GG5 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.66□□□□□ -2.52
PDLIM3Q53GG5 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.67□□□□□ -2.52
PDLIM3Q53GG5 RNU6-294P-201ENST00000364999 102 ntBASIC-0.67□□□□□ -2.52
PDLIM3Q53GG5 SNORD18.2-201ENST00000459604 70 ntBASIC-0.67□□□□□ -2.52
PDLIM3Q53GG5 RNU6-881P-201ENST00000516813 102 ntBASIC-0.67□□□□□ -2.52
PDLIM3Q53GG5 MIR3165-201ENST00000579874 75 ntBASIC-0.67□□□□□ -2.52
PDLIM3Q53GG5 MIR6739-201ENST00000622461 75 ntBASIC-0.67□□□□□ -2.52
PDLIM3Q53GG5 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.68□□□□□ -2.52
PDLIM3Q53GG5 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.68□□□□□ -2.52
PDLIM3Q53GG5 AP000533.3-201ENST00000447704 118 ntBASIC-0.68□□□□□ -2.52
PDLIM3Q53GG5 AC022137.1-201ENST00000483735 151 ntBASIC-0.68□□□□□ -2.52
PDLIM3Q53GG5 RNU6-518P-201ENST00000516056 96 ntBASIC-0.68□□□□□ -2.52
PDLIM3Q53GG5 Y_RNA.694-201ENST00000516677 117 ntBASIC-0.69□□□□□ -2.52
PDLIM3Q53GG5 SNORD45.1-201ENST00000363181 77 ntBASIC-0.7□□□□□ -2.52
PDLIM3Q53GG5 RNU6-645P-201ENST00000364649 106 ntBASIC-0.7□□□□□ -2.52
PDLIM3Q53GG5 SNORA62.4-201ENST00000365504 151 ntBASIC-0.7□□□□□ -2.52
PDLIM3Q53GG5 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.7□□□□□ -2.52
PDLIM3Q53GG5 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.7□□□□□ -2.52
PDLIM3Q53GG5 RNU6-604P-201ENST00000390917 100 ntBASIC-0.7□□□□□ -2.52
PDLIM3Q53GG5 RNU6-380P-201ENST00000410207 107 ntBASIC-0.7□□□□□ -2.52
PDLIM3Q53GG5 SNORA13-201ENST00000458790 133 ntBASIC-0.7□□□□□ -2.52
PDLIM3Q53GG5 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.7□□□□□ -2.52
PDLIM3Q53GG5 MIR5582-201ENST00000579697 68 ntBASIC-0.7□□□□□ -2.52
PDLIM3Q53GG5 SNORD114-25-201ENST00000363742 72 ntBASIC-0.71□□□□□ -2.52
PDLIM3Q53GG5 MIR517B-201ENST00000385102 67 ntBASIC-0.71□□□□□ -2.52
PDLIM3Q53GG5 RNA5SP470-201ENST00000516463 106 ntBASIC-0.71□□□□□ -2.52
PDLIM3Q53GG5 RNU6-656P-201ENST00000516785 107 ntBASIC-0.71□□□□□ -2.52
PDLIM3Q53GG5 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.72□□□□□ -2.52
PDLIM3Q53GG5 RNU6-979P-201ENST00000383896 107 ntBASIC-0.72□□□□□ -2.52
PDLIM3Q53GG5 MIR519A2-201ENST00000384990 87 ntBASIC-0.72□□□□□ -2.52
PDLIM3Q53GG5 MIR196A1-201ENST00000388006 70 ntBASIC-0.72□□□□□ -2.52
PDLIM3Q53GG5 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.73□□□□□ -2.53
PDLIM3Q53GG5 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.73□□□□□ -2.53
PDLIM3Q53GG5 RNU6-807P-201ENST00000516805 107 ntBASIC-0.73□□□□□ -2.53
PDLIM3Q53GG5 RNU6-242P-201ENST00000384359 107 ntBASIC-0.74□□□□□ -2.53
PDLIM3Q53GG5 RNU6-24P-201ENST00000384440 107 ntBASIC-0.74□□□□□ -2.53
PDLIM3Q53GG5 MIR450A2-201ENST00000385022 100 ntBASIC-0.74□□□□□ -2.53
PDLIM3Q53GG5 AC074348.1-201ENST00000426503 132 ntBASIC-0.74□□□□□ -2.53
PDLIM3Q53GG5 RNU6-982P-201ENST00000516216 102 ntBASIC-0.74□□□□□ -2.53
PDLIM3Q53GG5 MIR6888-201ENST00000621977 67 ntBASIC-0.74□□□□□ -2.53
PDLIM3Q53GG5 Y_RNA.403-201ENST00000383977 101 ntBASIC-0.75□□□□□ -2.53
PDLIM3Q53GG5 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.75□□□□□ -2.53
PDLIM3Q53GG5 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.75□□□□□ -2.53
PDLIM3Q53GG5 MIR4464-201ENST00000580818 92 ntBASIC-0.75□□□□□ -2.53
PDLIM3Q53GG5 SNORD74.6-201ENST00000364796 70 ntBASIC-0.76□□□□□ -2.53
PDLIM3Q53GG5 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.76□□□□□ -2.53
PDLIM3Q53GG5 AL500527.2-201ENST00000454105 95 ntBASIC-0.76□□□□□ -2.53
PDLIM3Q53GG5 MIR664A-201ENST00000626086 82 ntBASIC-0.76□□□□□ -2.53
PDLIM3Q53GG5 AL445584.3-201ENST00000617173 78 ntBASIC-0.77□□□□□ -2.53
PDLIM3Q53GG5 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.77□□□□□ -2.53
PDLIM3Q53GG5 MIR1297-201ENST00000637311 77 ntBASIC-0.77□□□□□ -2.53
PDLIM3Q53GG5 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.78□□□□□ -2.53
PDLIM3Q53GG5 SNORD83B-201ENST00000386745 93 ntBASIC-0.78□□□□□ -2.53
PDLIM3Q53GG5 AL021921.1-201ENST00000442774 93 ntBASIC-0.78□□□□□ -2.53
PDLIM3Q53GG5 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.79□□□□□ -2.54
PDLIM3Q53GG5 RNU6-1276P-201ENST00000365372 104 ntBASIC-0.79□□□□□ -2.54
PDLIM3Q53GG5 Y_RNA.369-201ENST00000365568 117 ntBASIC-0.79□□□□□ -2.54
PDLIM3Q53GG5 RNU6-431P-201ENST00000383874 107 ntBASIC-0.79□□□□□ -2.54
PDLIM3Q53GG5 RNU7-171P-201ENST00000459581 62 ntBASIC-0.79□□□□□ -2.54
PDLIM3Q53GG5 U2.7-201ENST00000619197 100 ntBASIC-0.79□□□□□ -2.54
PDLIM3Q53GG5 RNU6-315P-201ENST00000362666 107 ntBASIC-0.8□□□□□ -2.54
PDLIM3Q53GG5 SNORD114-17-201ENST00000364699 75 ntBASIC-0.8□□□□□ -2.54
PDLIM3Q53GG5 SNORD64-201ENST00000386683 67 ntBASIC-0.8□□□□□ -2.54
PDLIM3Q53GG5 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-0.8□□□□□ -2.54
PDLIM3Q53GG5 RNU7-154P-201ENST00000516194 62 ntBASIC-0.8□□□□□ -2.54
PDLIM3Q53GG5 RNA5SP170-201ENST00000517150 101 ntBASIC-0.81□□□□□ -2.54
PDLIM3Q53GG5 SCARNA18B-201ENST00000458806 135 ntBASIC-0.82□□□□□ -2.54
PDLIM3Q53GG5 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.82□□□□□ -2.54
PDLIM3Q53GG5 RNU6-119P-201ENST00000364882 107 ntBASIC-0.83□□□□□ -2.54
PDLIM3Q53GG5 MIR147A-201ENST00000385079 72 ntBASIC-0.83□□□□□ -2.54
PDLIM3Q53GG5 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.83□□□□□ -2.54
PDLIM3Q53GG5 MIR4712-201ENST00000583750 82 ntBASIC-0.83□□□□□ -2.54
PDLIM3Q53GG5 MIR548V-201ENST00000584165 80 ntBASIC-0.83□□□□□ -2.54
PDLIM3Q53GG5 AC062037.1-201ENST00000605302 128 ntBASIC-0.83□□□□□ -2.54
PDLIM3Q53GG5 MIR1245B-201ENST00000636115 69 ntBASIC-0.83□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 168.7 ms