Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.69□□□□□ -2.52
SHMT1P34896 RNA5SP170-201ENST00000517150 101 ntBASIC-0.69□□□□□ -2.52
SHMT1P34896 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.7□□□□□ -2.52
SHMT1P34896 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.7□□□□□ -2.52
SHMT1P34896 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.7□□□□□ -2.52
SHMT1P34896 AP000533.3-201ENST00000447704 118 ntBASIC-0.7□□□□□ -2.52
SHMT1P34896 AL445584.3-201ENST00000617173 78 ntBASIC-0.7□□□□□ -2.52
SHMT1P34896 RNU6-1276P-201ENST00000365372 104 ntBASIC-0.71□□□□□ -2.52
SHMT1P34896 MIR517B-201ENST00000385102 67 ntBASIC-0.71□□□□□ -2.52
SHMT1P34896 RNU7-154P-201ENST00000516194 62 ntBASIC-0.71□□□□□ -2.52
SHMT1P34896 MIR4484-201ENST00000582855 83 ntBASIC-0.71□□□□□ -2.52
SHMT1P34896 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.71□□□□□ -2.52
SHMT1P34896 SNORD45.1-201ENST00000363181 77 ntBASIC-0.72□□□□□ -2.52
SHMT1P34896 RNU6-645P-201ENST00000364649 106 ntBASIC-0.72□□□□□ -2.52
SHMT1P34896 AL021921.1-201ENST00000442774 93 ntBASIC-0.72□□□□□ -2.52
SHMT1P34896 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.72□□□□□ -2.52
SHMT1P34896 MIR1245B-201ENST00000636115 69 ntBASIC-0.72□□□□□ -2.52
SHMT1P34896 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.73□□□□□ -2.53
SHMT1P34896 MIR124-2-201ENST00000385081 109 ntBASIC-0.73□□□□□ -2.53
SHMT1P34896 MT-TQ-201ENST00000387372 72 ntBASIC-0.73□□□□□ -2.53
SHMT1P34896 SNORD114-25-201ENST00000363742 72 ntBASIC-0.74□□□□□ -2.53
SHMT1P34896 RNU6-431P-201ENST00000383874 107 ntBASIC-0.74□□□□□ -2.53
SHMT1P34896 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.74□□□□□ -2.53
SHMT1P34896 RNU4-63P-201ENST00000411313 118 ntBASIC-0.74□□□□□ -2.53
SHMT1P34896 RNU6-1298P-201ENST00000362456 101 ntBASIC-0.75□□□□□ -2.53
SHMT1P34896 MIR196A1-201ENST00000388006 70 ntBASIC-0.75□□□□□ -2.53
SHMT1P34896 RNU6-604P-201ENST00000390917 100 ntBASIC-0.75□□□□□ -2.53
SHMT1P34896 RNU6-518P-201ENST00000516056 96 ntBASIC-0.75□□□□□ -2.53
SHMT1P34896 MIR4666B-201ENST00000578142 81 ntBASIC-0.75□□□□□ -2.53
SHMT1P34896 MIR548AG1-201ENST00000579932 66 ntBASIC-0.75□□□□□ -2.53
SHMT1P34896 MIR519A2-201ENST00000384990 87 ntBASIC-0.76□□□□□ -2.53
SHMT1P34896 MIR147A-201ENST00000385079 72 ntBASIC-0.76□□□□□ -2.53
SHMT1P34896 AL500527.2-201ENST00000454105 95 ntBASIC-0.76□□□□□ -2.53
SHMT1P34896 MIR4712-201ENST00000583750 82 ntBASIC-0.76□□□□□ -2.53
SHMT1P34896 MIR8053-201ENST00000613344 75 ntBASIC-0.77□□□□□ -2.53
SHMT1P34896 SNORD64-201ENST00000386683 67 ntBASIC-0.78□□□□□ -2.53
SHMT1P34896 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.78□□□□□ -2.53
SHMT1P34896 SNORD18.2-201ENST00000459604 70 ntBASIC-0.78□□□□□ -2.53
SHMT1P34896 RNA5SP67-201ENST00000516422 131 ntBASIC-0.78□□□□□ -2.53
SHMT1P34896 MIR548AX-201ENST00000580117 73 ntBASIC-0.78□□□□□ -2.53
SHMT1P34896 U2.7-201ENST00000619197 100 ntBASIC-0.78□□□□□ -2.53
SHMT1P34896 AL627230.5-201ENST00000619807 58 ntBASIC-0.79□□□□□ -2.54
SHMT1P34896 AC062037.1-201ENST00000605302 128 ntBASIC-0.8□□□□□ -2.54
SHMT1P34896 RNU6-924P-201ENST00000362926 108 ntBASIC-0.81□□□□□ -2.54
SHMT1P34896 SNORD114-17-201ENST00000364699 75 ntBASIC-0.81□□□□□ -2.54
SHMT1P34896 MIR548C-201ENST00000384815 97 ntBASIC-0.81□□□□□ -2.54
SHMT1P34896 MTND4LP1-201ENST00000446263 157 ntBASIC-0.81□□□□□ -2.54
SHMT1P34896 FAS-AS1.1-201ENST00000615327 126 ntBASIC-0.81□□□□□ -2.54
SHMT1P34896 RNU6-1152P-201ENST00000384576 107 ntBASIC-0.82□□□□□ -2.54
SHMT1P34896 RNU6-982P-201ENST00000516216 102 ntBASIC-0.82□□□□□ -2.54
SHMT1P34896 MIR382-201ENST00000637119 76 ntBASIC-0.82□□□□□ -2.54
SHMT1P34896 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.83□□□□□ -2.54
SHMT1P34896 SNORD115-22-201ENST00000364456 82 ntBASIC-0.83□□□□□ -2.54
SHMT1P34896 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.83□□□□□ -2.54
SHMT1P34896 RNU6-1255P-201ENST00000363434 112 ntBASIC-0.84□□□□□ -2.54
SHMT1P34896 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.84□□□□□ -2.54
SHMT1P34896 SNORD83B-201ENST00000386745 93 ntBASIC-0.84□□□□□ -2.54
SHMT1P34896 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.84□□□□□ -2.54
SHMT1P34896 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.85□□□□□ -2.55
SHMT1P34896 SCARNA18B-201ENST00000458806 135 ntBASIC-0.85□□□□□ -2.55
SHMT1P34896 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-0.85□□□□□ -2.55
SHMT1P34896 SNORD73B-201ENST00000364394 72 ntBASIC-0.86□□□□□ -2.55
SHMT1P34896 RNU6-246P-201ENST00000384702 107 ntBASIC-0.86□□□□□ -2.55
SHMT1P34896 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.86□□□□□ -2.55
SHMT1P34896 MIR4499-201ENST00000584834 69 ntBASIC-0.86□□□□□ -2.55
SHMT1P34896 Y_RNA.43-201ENST00000362670 111 ntBASIC-0.87□□□□□ -2.55
SHMT1P34896 SNORD113.1-201ENST00000363280 73 ntBASIC-0.87□□□□□ -2.55
SHMT1P34896 RNU6-787P-201ENST00000384032 107 ntBASIC-0.87□□□□□ -2.55
SHMT1P34896 SNORD63.1-201ENST00000516178 80 ntBASIC-0.87□□□□□ -2.55
SHMT1P34896 RNU6-70P-201ENST00000516438 60 ntBASIC-0.87□□□□□ -2.55
SHMT1P34896 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.87□□□□□ -2.55
SHMT1P34896 MIR664A-201ENST00000626086 82 ntBASIC-0.87□□□□□ -2.55
SHMT1P34896 uc_338.19-201ENST00000616808 99 ntBASIC-0.88□□□□□ -2.55
SHMT1P34896 RNU6-668P-201ENST00000364180 107 ntBASIC-0.89□□□□□ -2.55
SHMT1P34896 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.89□□□□□ -2.55
SHMT1P34896 SNORA26.4-201ENST00000391188 123 ntBASIC-0.89□□□□□ -2.55
SHMT1P34896 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.89□□□□□ -2.55
SHMT1P34896 RNU7-174P-201ENST00000516248 59 ntBASIC-0.89□□□□□ -2.55
SHMT1P34896 MIR409-201ENST00000362237 79 ntBASIC-0.9□□□□□ -2.55
SHMT1P34896 MIR3202-2-201ENST00000635980 79 ntBASIC-0.9□□□□□ -2.55
SHMT1P34896 RNA5SP215-201ENST00000363440 122 ntBASIC-0.91□□□□□ -2.56
SHMT1P34896 SNORD115-33-201ENST00000363723 82 ntBASIC-0.91□□□□□ -2.56
SHMT1P34896 SNORD45A-201ENST00000384512 84 ntBASIC-0.91□□□□□ -2.56
SHMT1P34896 RNU6-1241P-201ENST00000384536 107 ntBASIC-0.91□□□□□ -2.56
SHMT1P34896 MIR154-201ENST00000385243 84 ntBASIC-0.91□□□□□ -2.56
SHMT1P34896 SNORA26.2-201ENST00000390922 122 ntBASIC-0.91□□□□□ -2.56
SHMT1P34896 AP002795.1-201ENST00000534879 84 ntBASIC-0.91□□□□□ -2.56
SHMT1P34896 SCARNA17-201ENST00000516183 144 ntBASIC-0.92□□□□□ -2.56
SHMT1P34896 RNU6-698P-201ENST00000363523 107 ntBASIC-0.93□□□□□ -2.56
SHMT1P34896 RNU6-34P-201ENST00000364874 107 ntBASIC-0.93□□□□□ -2.56
SHMT1P34896 SNORD19-201ENST00000391191 68 ntBASIC-0.93□□□□□ -2.56
SHMT1P34896 RNY4P29-201ENST00000410801 97 ntBASIC-0.93□□□□□ -2.56
SHMT1P34896 RNU6-587P-201ENST00000391282 106 ntBASIC-0.94□□□□□ -2.56
SHMT1P34896 U7.5-201ENST00000517224 61 ntBASIC-0.94□□□□□ -2.56
SHMT1P34896 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.95□□□□□ -2.56
SHMT1P34896 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.95□□□□□ -2.56
SHMT1P34896 RNU6-895P-201ENST00000384125 103 ntBASIC-0.95□□□□□ -2.56
SHMT1P34896 RNU7-134P-201ENST00000458997 64 ntBASIC-0.95□□□□□ -2.56
SHMT1P34896 RNU6-732P-201ENST00000516033 103 ntBASIC-0.95□□□□□ -2.56
SHMT1P34896 RNA5SP26-201ENST00000362406 119 ntBASIC-0.96□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms