Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.69□□□□□ -2.52
SHMT1P34896 RNA5SP170-201ENST00000517150 101 ntBASIC-0.69□□□□□ -2.52
SHMT1P34896 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.7□□□□□ -2.52
SHMT1P34896 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.7□□□□□ -2.52
SHMT1P34896 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.7□□□□□ -2.52
SHMT1P34896 AP000533.3-201ENST00000447704 118 ntBASIC-0.7□□□□□ -2.52
SHMT1P34896 AL445584.3-201ENST00000617173 78 ntBASIC-0.7□□□□□ -2.52
SHMT1P34896 RNU6-1276P-201ENST00000365372 104 ntBASIC-0.71□□□□□ -2.52
SHMT1P34896 MIR517B-201ENST00000385102 67 ntBASIC-0.71□□□□□ -2.52
SHMT1P34896 RNU7-154P-201ENST00000516194 62 ntBASIC-0.71□□□□□ -2.52
SHMT1P34896 MIR4484-201ENST00000582855 83 ntBASIC-0.71□□□□□ -2.52
SHMT1P34896 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.71□□□□□ -2.52
SHMT1P34896 SNORD45.1-201ENST00000363181 77 ntBASIC-0.72□□□□□ -2.52
SHMT1P34896 RNU6-645P-201ENST00000364649 106 ntBASIC-0.72□□□□□ -2.52
SHMT1P34896 AL021921.1-201ENST00000442774 93 ntBASIC-0.72□□□□□ -2.52
SHMT1P34896 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.72□□□□□ -2.52
SHMT1P34896 MIR1245B-201ENST00000636115 69 ntBASIC-0.72□□□□□ -2.52
SHMT1P34896 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.73□□□□□ -2.53
SHMT1P34896 MIR124-2-201ENST00000385081 109 ntBASIC-0.73□□□□□ -2.53
SHMT1P34896 MT-TQ-201ENST00000387372 72 ntBASIC-0.73□□□□□ -2.53
SHMT1P34896 SNORD114-25-201ENST00000363742 72 ntBASIC-0.74□□□□□ -2.53
SHMT1P34896 RNU6-431P-201ENST00000383874 107 ntBASIC-0.74□□□□□ -2.53
SHMT1P34896 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.74□□□□□ -2.53
SHMT1P34896 RNU4-63P-201ENST00000411313 118 ntBASIC-0.74□□□□□ -2.53
SHMT1P34896 RNU6-1298P-201ENST00000362456 101 ntBASIC-0.75□□□□□ -2.53
SHMT1P34896 MIR196A1-201ENST00000388006 70 ntBASIC-0.75□□□□□ -2.53
SHMT1P34896 RNU6-604P-201ENST00000390917 100 ntBASIC-0.75□□□□□ -2.53
SHMT1P34896 RNU6-518P-201ENST00000516056 96 ntBASIC-0.75□□□□□ -2.53
SHMT1P34896 MIR4666B-201ENST00000578142 81 ntBASIC-0.75□□□□□ -2.53
SHMT1P34896 MIR548AG1-201ENST00000579932 66 ntBASIC-0.75□□□□□ -2.53
SHMT1P34896 MIR519A2-201ENST00000384990 87 ntBASIC-0.76□□□□□ -2.53
SHMT1P34896 MIR147A-201ENST00000385079 72 ntBASIC-0.76□□□□□ -2.53
SHMT1P34896 AL500527.2-201ENST00000454105 95 ntBASIC-0.76□□□□□ -2.53
SHMT1P34896 MIR4712-201ENST00000583750 82 ntBASIC-0.76□□□□□ -2.53
SHMT1P34896 MIR8053-201ENST00000613344 75 ntBASIC-0.77□□□□□ -2.53
SHMT1P34896 SNORD64-201ENST00000386683 67 ntBASIC-0.78□□□□□ -2.53
SHMT1P34896 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.78□□□□□ -2.53
SHMT1P34896 SNORD18.2-201ENST00000459604 70 ntBASIC-0.78□□□□□ -2.53
SHMT1P34896 RNA5SP67-201ENST00000516422 131 ntBASIC-0.78□□□□□ -2.53
SHMT1P34896 MIR548AX-201ENST00000580117 73 ntBASIC-0.78□□□□□ -2.53
SHMT1P34896 U2.7-201ENST00000619197 100 ntBASIC-0.78□□□□□ -2.53
SHMT1P34896 AL627230.5-201ENST00000619807 58 ntBASIC-0.79□□□□□ -2.54
SHMT1P34896 AC062037.1-201ENST00000605302 128 ntBASIC-0.8□□□□□ -2.54
SHMT1P34896 RNU6-924P-201ENST00000362926 108 ntBASIC-0.81□□□□□ -2.54
SHMT1P34896 SNORD114-17-201ENST00000364699 75 ntBASIC-0.81□□□□□ -2.54
SHMT1P34896 MIR548C-201ENST00000384815 97 ntBASIC-0.81□□□□□ -2.54
SHMT1P34896 MTND4LP1-201ENST00000446263 157 ntBASIC-0.81□□□□□ -2.54
SHMT1P34896 FAS-AS1.1-201ENST00000615327 126 ntBASIC-0.81□□□□□ -2.54
SHMT1P34896 RNU6-1152P-201ENST00000384576 107 ntBASIC-0.82□□□□□ -2.54
SHMT1P34896 RNU6-982P-201ENST00000516216 102 ntBASIC-0.82□□□□□ -2.54
SHMT1P34896 MIR382-201ENST00000637119 76 ntBASIC-0.82□□□□□ -2.54
SHMT1P34896 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.83□□□□□ -2.54
SHMT1P34896 SNORD115-22-201ENST00000364456 82 ntBASIC-0.83□□□□□ -2.54
SHMT1P34896 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.83□□□□□ -2.54
SHMT1P34896 RNU6-1255P-201ENST00000363434 112 ntBASIC-0.84□□□□□ -2.54
SHMT1P34896 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.84□□□□□ -2.54
SHMT1P34896 SNORD83B-201ENST00000386745 93 ntBASIC-0.84□□□□□ -2.54
SHMT1P34896 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.84□□□□□ -2.54
SHMT1P34896 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.85□□□□□ -2.55
SHMT1P34896 SCARNA18B-201ENST00000458806 135 ntBASIC-0.85□□□□□ -2.55
SHMT1P34896 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-0.85□□□□□ -2.55
SHMT1P34896 SNORD73B-201ENST00000364394 72 ntBASIC-0.86□□□□□ -2.55
SHMT1P34896 RNU6-246P-201ENST00000384702 107 ntBASIC-0.86□□□□□ -2.55
SHMT1P34896 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.86□□□□□ -2.55
SHMT1P34896 MIR4499-201ENST00000584834 69 ntBASIC-0.86□□□□□ -2.55
SHMT1P34896 Y_RNA.43-201ENST00000362670 111 ntBASIC-0.87□□□□□ -2.55
SHMT1P34896 SNORD113.1-201ENST00000363280 73 ntBASIC-0.87□□□□□ -2.55
SHMT1P34896 RNU6-787P-201ENST00000384032 107 ntBASIC-0.87□□□□□ -2.55
SHMT1P34896 SNORD63.1-201ENST00000516178 80 ntBASIC-0.87□□□□□ -2.55
SHMT1P34896 RNU6-70P-201ENST00000516438 60 ntBASIC-0.87□□□□□ -2.55
SHMT1P34896 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.87□□□□□ -2.55
SHMT1P34896 MIR664A-201ENST00000626086 82 ntBASIC-0.87□□□□□ -2.55
SHMT1P34896 uc_338.19-201ENST00000616808 99 ntBASIC-0.88□□□□□ -2.55
SHMT1P34896 RNU6-668P-201ENST00000364180 107 ntBASIC-0.89□□□□□ -2.55
SHMT1P34896 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.89□□□□□ -2.55
SHMT1P34896 SNORA26.4-201ENST00000391188 123 ntBASIC-0.89□□□□□ -2.55
SHMT1P34896 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.89□□□□□ -2.55
SHMT1P34896 RNU7-174P-201ENST00000516248 59 ntBASIC-0.89□□□□□ -2.55
SHMT1P34896 MIR409-201ENST00000362237 79 ntBASIC-0.9□□□□□ -2.55
SHMT1P34896 MIR3202-2-201ENST00000635980 79 ntBASIC-0.9□□□□□ -2.55
SHMT1P34896 RNA5SP215-201ENST00000363440 122 ntBASIC-0.91□□□□□ -2.56
SHMT1P34896 SNORD115-33-201ENST00000363723 82 ntBASIC-0.91□□□□□ -2.56
SHMT1P34896 SNORD45A-201ENST00000384512 84 ntBASIC-0.91□□□□□ -2.56
SHMT1P34896 RNU6-1241P-201ENST00000384536 107 ntBASIC-0.91□□□□□ -2.56
SHMT1P34896 MIR154-201ENST00000385243 84 ntBASIC-0.91□□□□□ -2.56
SHMT1P34896 SNORA26.2-201ENST00000390922 122 ntBASIC-0.91□□□□□ -2.56
SHMT1P34896 AP002795.1-201ENST00000534879 84 ntBASIC-0.91□□□□□ -2.56
SHMT1P34896 SCARNA17-201ENST00000516183 144 ntBASIC-0.92□□□□□ -2.56
SHMT1P34896 RNU6-698P-201ENST00000363523 107 ntBASIC-0.93□□□□□ -2.56
SHMT1P34896 RNU6-34P-201ENST00000364874 107 ntBASIC-0.93□□□□□ -2.56
SHMT1P34896 SNORD19-201ENST00000391191 68 ntBASIC-0.93□□□□□ -2.56
SHMT1P34896 RNY4P29-201ENST00000410801 97 ntBASIC-0.93□□□□□ -2.56
SHMT1P34896 RNU6-587P-201ENST00000391282 106 ntBASIC-0.94□□□□□ -2.56
SHMT1P34896 U7.5-201ENST00000517224 61 ntBASIC-0.94□□□□□ -2.56
SHMT1P34896 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.95□□□□□ -2.56
SHMT1P34896 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.95□□□□□ -2.56
SHMT1P34896 RNU6-895P-201ENST00000384125 103 ntBASIC-0.95□□□□□ -2.56
SHMT1P34896 RNU7-134P-201ENST00000458997 64 ntBASIC-0.95□□□□□ -2.56
SHMT1P34896 RNU6-732P-201ENST00000516033 103 ntBASIC-0.95□□□□□ -2.56
SHMT1P34896 RNA5SP26-201ENST00000362406 119 ntBASIC-0.96□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 184.8 ms