Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AL691482.2-201ENST00000457453 84 ntBASIC-0.65□□□□□ -2.51
LIME1Q9H400 YWHAEP3-201ENST00000582767 121 ntBASIC-0.65□□□□□ -2.51
LIME1Q9H400 MIR5704-201ENST00000584029 77 ntBASIC-0.65□□□□□ -2.51
LIME1Q9H400 MIR4436A-201ENST00000585278 85 ntBASIC-0.65□□□□□ -2.51
LIME1Q9H400 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.65□□□□□ -2.51
LIME1Q9H400 SNORD115-37-201ENST00000363768 82 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 RNU6-340P-201ENST00000364005 107 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 SNORD116-22-201ENST00000384430 92 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 RNU6-905P-201ENST00000384434 107 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 MIR203A-201ENST00000384836 110 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 MIR6854-201ENST00000614935 69 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 AC090617.8-201ENST00000623339 167 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 U6.96-201ENST00000636425 70 ntBASIC-0.66□□□□□ -2.52
LIME1Q9H400 RNU6-624P-201ENST00000363411 107 ntBASIC-0.67□□□□□ -2.52
LIME1Q9H400 MIR488-201ENST00000365739 83 ntBASIC-0.67□□□□□ -2.52
LIME1Q9H400 snoR1.1-201ENST00000628177 80 ntBASIC-0.67□□□□□ -2.52
LIME1Q9H400 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.68□□□□□ -2.52
LIME1Q9H400 MIR204-201ENST00000385200 110 ntBASIC-0.68□□□□□ -2.52
LIME1Q9H400 AL035461.1-201ENST00000421490 332 ntBASIC-0.68□□□□□ -2.52
LIME1Q9H400 RNA5SP147-201ENST00000516493 109 ntBASIC-0.68□□□□□ -2.52
LIME1Q9H400 AC140658.3-201ENST00000567603 271 ntBASIC-0.68□□□□□ -2.52
LIME1Q9H400 MIR198-201ENST00000637333 62 ntBASIC-0.68□□□□□ -2.52
LIME1Q9H400 RNU6-681P-201ENST00000364012 104 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 Y_RNA.291-201ENST00000364886 113 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 SNORA33.1-201ENST00000364957 130 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 SNORA3B-201ENST00000391305 131 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 AC093729.1-201ENST00000513074 128 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 AC021146.6-201ENST00000514659 117 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 MIR4723-201ENST00000585070 81 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 MIR8068-201ENST00000618032 68 ntBASIC-0.69□□□□□ -2.52
LIME1Q9H400 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.7□□□□□ -2.52
LIME1Q9H400 RNU6-675P-201ENST00000384236 104 ntBASIC-0.7□□□□□ -2.52
LIME1Q9H400 MIR518B-201ENST00000385127 83 ntBASIC-0.7□□□□□ -2.52
LIME1Q9H400 RNU6-402P-201ENST00000410678 103 ntBASIC-0.7□□□□□ -2.52
LIME1Q9H400 MIR548AI-201ENST00000579940 88 ntBASIC-0.7□□□□□ -2.52
LIME1Q9H400 MIR6739-201ENST00000622461 75 ntBASIC-0.7□□□□□ -2.52
LIME1Q9H400 MIR521-2-201ENST00000384818 87 ntBASIC-0.71□□□□□ -2.52
LIME1Q9H400 RNU6-557P-201ENST00000516842 110 ntBASIC-0.71□□□□□ -2.52
LIME1Q9H400 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.72□□□□□ -2.52
LIME1Q9H400 SNORD74.6-201ENST00000364796 70 ntBASIC-0.72□□□□□ -2.52
LIME1Q9H400 SNORA62.4-201ENST00000365504 151 ntBASIC-0.72□□□□□ -2.52
LIME1Q9H400 MIR587-201ENST00000384845 96 ntBASIC-0.72□□□□□ -2.52
LIME1Q9H400 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.72□□□□□ -2.52
LIME1Q9H400 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.72□□□□□ -2.52
LIME1Q9H400 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 RNU6-267P-201ENST00000516714 103 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 MIR3179-1-201ENST00000578940 84 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 MIR3179-2-201ENST00000579107 84 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 MIR3179-3-201ENST00000579566 84 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 MIR3179-4-201ENST00000617599 84 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 MIR548BB-201ENST00000626714 66 ntBASIC-0.73□□□□□ -2.53
LIME1Q9H400 RNU6-44P-201ENST00000384045 107 ntBASIC-0.74□□□□□ -2.53
LIME1Q9H400 SNORD22.1-201ENST00000516331 125 ntBASIC-0.74□□□□□ -2.53
LIME1Q9H400 RNA5SP470-201ENST00000516463 106 ntBASIC-0.74□□□□□ -2.53
LIME1Q9H400 RNU6-844P-201ENST00000517175 102 ntBASIC-0.74□□□□□ -2.53
LIME1Q9H400 AL353803.5-201ENST00000599815 141 ntBASIC-0.74□□□□□ -2.53
LIME1Q9H400 U2.22-201ENST00000636441 106 ntBASIC-0.74□□□□□ -2.53
LIME1Q9H400 MIR4464-201ENST00000580818 92 ntBASIC-0.75□□□□□ -2.53
LIME1Q9H400 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.76□□□□□ -2.53
LIME1Q9H400 RNY1P7-201ENST00000384743 110 ntBASIC-0.76□□□□□ -2.53
LIME1Q9H400 RNU6-721P-201ENST00000410155 105 ntBASIC-0.76□□□□□ -2.53
LIME1Q9H400 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.77□□□□□ -2.53
LIME1Q9H400 MIR1255B2-201ENST00000408618 67 ntBASIC-0.77□□□□□ -2.53
LIME1Q9H400 RNU6-168P-201ENST00000516189 101 ntBASIC-0.77□□□□□ -2.53
LIME1Q9H400 RNU6-881P-201ENST00000516813 102 ntBASIC-0.77□□□□□ -2.53
LIME1Q9H400 CYP3A54P-201ENST00000566950 75 ntBASIC-0.77□□□□□ -2.53
LIME1Q9H400 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.78□□□□□ -2.53
LIME1Q9H400 RNU7-154P-201ENST00000516194 62 ntBASIC-0.78□□□□□ -2.53
LIME1Q9H400 MIR3681-201ENST00000580089 72 ntBASIC-0.78□□□□□ -2.53
LIME1Q9H400 MIR4320-201ENST00000636981 65 ntBASIC-0.78□□□□□ -2.53
LIME1Q9H400 MIR601-201ENST00000385256 79 ntBASIC-0.79□□□□□ -2.54
LIME1Q9H400 RNU6-303P-201ENST00000517091 106 ntBASIC-0.79□□□□□ -2.54
LIME1Q9H400 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.8□□□□□ -2.54
LIME1Q9H400 RNU6-686P-201ENST00000364839 107 ntBASIC-0.8□□□□□ -2.54
LIME1Q9H400 AC022137.1-201ENST00000483735 151 ntBASIC-0.8□□□□□ -2.54
LIME1Q9H400 RNU6-478P-201ENST00000363904 110 ntBASIC-0.81□□□□□ -2.54
LIME1Q9H400 RNA5SP89-201ENST00000410300 108 ntBASIC-0.81□□□□□ -2.54
LIME1Q9H400 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.81□□□□□ -2.54
LIME1Q9H400 AC074348.1-201ENST00000426503 132 ntBASIC-0.81□□□□□ -2.54
LIME1Q9H400 AL445584.3-201ENST00000617173 78 ntBASIC-0.81□□□□□ -2.54
LIME1Q9H400 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.81□□□□□ -2.54
LIME1Q9H400 AC006160.2-201ENST00000637708 154 ntBASIC-0.81□□□□□ -2.54
LIME1Q9H400 RNU6-129P-201ENST00000391022 107 ntBASIC-0.82□□□□□ -2.54
LIME1Q9H400 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.82□□□□□ -2.54
LIME1Q9H400 AP000533.3-201ENST00000447704 118 ntBASIC-0.82□□□□□ -2.54
LIME1Q9H400 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.82□□□□□ -2.54
LIME1Q9H400 MIR6888-201ENST00000621977 67 ntBASIC-0.82□□□□□ -2.54
LIME1Q9H400 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.83□□□□□ -2.54
LIME1Q9H400 RNU6-49P-201ENST00000384256 107 ntBASIC-0.83□□□□□ -2.54
LIME1Q9H400 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.83□□□□□ -2.54
LIME1Q9H400 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.83□□□□□ -2.54
LIME1Q9H400 RNU6-656P-201ENST00000516785 107 ntBASIC-0.83□□□□□ -2.54
LIME1Q9H400 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.84□□□□□ -2.54
LIME1Q9H400 RNU6-153P-201ENST00000364422 104 ntBASIC-0.85□□□□□ -2.55
LIME1Q9H400 SNORA8.1-201ENST00000384250 140 ntBASIC-0.85□□□□□ -2.55
LIME1Q9H400 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.85□□□□□ -2.55
LIME1Q9H400 MIR517B-201ENST00000385102 67 ntBASIC-0.85□□□□□ -2.55
LIME1Q9H400 MIR196A1-201ENST00000388006 70 ntBASIC-0.85□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 390.9 ms