Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 CYP3A54P-201ENST00000566950 75 ntBASIC-1.58□□□□□ -2.66
CHMP4AQ9BY43 MIR4499-201ENST00000584834 69 ntBASIC-1.58□□□□□ -2.66
CHMP4AQ9BY43 uc_338.19-201ENST00000616808 99 ntBASIC-1.6□□□□□ -2.67
CHMP4AQ9BY43 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-1.6□□□□□ -2.67
CHMP4AQ9BY43 SNORD114-17-201ENST00000364699 75 ntBASIC-1.61□□□□□ -2.67
CHMP4AQ9BY43 SCARNA18B-201ENST00000458806 135 ntBASIC-1.61□□□□□ -2.67
CHMP4AQ9BY43 MIR382-201ENST00000637119 76 ntBASIC-1.61□□□□□ -2.67
CHMP4AQ9BY43 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.62□□□□□ -2.67
CHMP4AQ9BY43 MIR4464-201ENST00000580818 92 ntBASIC-1.62□□□□□ -2.67
CHMP4AQ9BY43 AC140658.3-201ENST00000567603 271 ntBASIC-1.63□□□□□ -2.67
CHMP4AQ9BY43 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.64□□□□□ -2.67
CHMP4AQ9BY43 RNU6-1056P-201ENST00000383996 107 ntBASIC-1.64□□□□□ -2.67
CHMP4AQ9BY43 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.64□□□□□ -2.67
CHMP4AQ9BY43 MIR6888-201ENST00000621977 67 ntBASIC-1.64□□□□□ -2.67
CHMP4AQ9BY43 AL445584.3-201ENST00000617173 78 ntBASIC-1.65□□□□□ -2.67
CHMP4AQ9BY43 RNA5SP192-201ENST00000364404 120 ntBASIC-1.66□□□□□ -2.68
CHMP4AQ9BY43 MIR521-2-201ENST00000384818 87 ntBASIC-1.66□□□□□ -2.68
CHMP4AQ9BY43 MIR519C-201ENST00000385053 87 ntBASIC-1.66□□□□□ -2.68
CHMP4AQ9BY43 MIR601-201ENST00000385256 79 ntBASIC-1.66□□□□□ -2.68
CHMP4AQ9BY43 RNU6-752P-201ENST00000516376 102 ntBASIC-1.66□□□□□ -2.68
CHMP4AQ9BY43 RNU6-766P-201ENST00000362478 107 ntBASIC-1.67□□□□□ -2.68
CHMP4AQ9BY43 SNORD115-27-201ENST00000364430 82 ntBASIC-1.67□□□□□ -2.68
CHMP4AQ9BY43 RNU6-81P-201ENST00000365608 104 ntBASIC-1.67□□□□□ -2.68
CHMP4AQ9BY43 Y_RNA.544-201ENST00000384650 113 ntBASIC-1.68□□□□□ -2.68
CHMP4AQ9BY43 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.68□□□□□ -2.68
CHMP4AQ9BY43 TMSB4XP3-201ENST00000445144 114 ntBASIC-1.68□□□□□ -2.68
CHMP4AQ9BY43 MIR378F-201ENST00000578143 78 ntBASIC-1.68□□□□□ -2.68
CHMP4AQ9BY43 MIR198-201ENST00000637333 62 ntBASIC-1.68□□□□□ -2.68
CHMP4AQ9BY43 RNU6-681P-201ENST00000364012 104 ntBASIC-1.69□□□□□ -2.68
CHMP4AQ9BY43 RNU6-24P-201ENST00000384440 107 ntBASIC-1.69□□□□□ -2.68
CHMP4AQ9BY43 RNU6-589P-201ENST00000516485 107 ntBASIC-1.69□□□□□ -2.68
CHMP4AQ9BY43 RNU6-340P-201ENST00000364005 107 ntBASIC-1.7□□□□□ -2.68
CHMP4AQ9BY43 Y_RNA.290-201ENST00000364879 114 ntBASIC-1.7□□□□□ -2.68
CHMP4AQ9BY43 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.7□□□□□ -2.68
CHMP4AQ9BY43 SNORD77.2-201ENST00000391045 68 ntBASIC-1.71□□□□□ -2.68
CHMP4AQ9BY43 MIR3165-201ENST00000579874 75 ntBASIC-1.71□□□□□ -2.68
CHMP4AQ9BY43 RNU6-924P-201ENST00000362926 108 ntBASIC-1.72□□□□□ -2.68
CHMP4AQ9BY43 SNORD115-37-201ENST00000363768 82 ntBASIC-1.72□□□□□ -2.68
CHMP4AQ9BY43 MTATP8P2-201ENST00000435212 202 ntBASIC-1.72□□□□□ -2.68
CHMP4AQ9BY43 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.72□□□□□ -2.68
CHMP4AQ9BY43 MIR6739-201ENST00000622461 75 ntBASIC-1.72□□□□□ -2.68
CHMP4AQ9BY43 MT-TR-201ENST00000387439 65 ntBASIC-1.73□□□□□ -2.69
CHMP4AQ9BY43 MIR3115-201ENST00000577915 68 ntBASIC-1.73□□□□□ -2.69
CHMP4AQ9BY43 RNU6-834P-201ENST00000362367 110 ntBASIC-1.74□□□□□ -2.69
CHMP4AQ9BY43 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.74□□□□□ -2.69
CHMP4AQ9BY43 MIR548M-201ENST00000408260 86 ntBASIC-1.74□□□□□ -2.69
CHMP4AQ9BY43 RNU6-518P-201ENST00000516056 96 ntBASIC-1.74□□□□□ -2.69
CHMP4AQ9BY43 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.75□□□□□ -2.69
CHMP4AQ9BY43 RNU6-1168P-201ENST00000390831 104 ntBASIC-1.75□□□□□ -2.69
CHMP4AQ9BY43 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.75□□□□□ -2.69
CHMP4AQ9BY43 snoU83B.1-201ENST00000517136 88 ntBASIC-1.75□□□□□ -2.69
CHMP4AQ9BY43 RNU6-22P-201ENST00000384355 107 ntBASIC-1.76□□□□□ -2.69
CHMP4AQ9BY43 RNU6-1117P-201ENST00000384525 104 ntBASIC-1.76□□□□□ -2.69
CHMP4AQ9BY43 RNU7-154P-201ENST00000516194 62 ntBASIC-1.76□□□□□ -2.69
CHMP4AQ9BY43 MIR2052-201ENST00000636055 55 ntBASIC-1.76□□□□□ -2.69
CHMP4AQ9BY43 MIR519A2-201ENST00000384990 87 ntBASIC-1.77□□□□□ -2.69
CHMP4AQ9BY43 AL035461.1-201ENST00000421490 332 ntBASIC-1.77□□□□□ -2.69
CHMP4AQ9BY43 AL031737.1-201ENST00000450125 223 ntBASIC-1.77□□□□□ -2.69
CHMP4AQ9BY43 RNA5SP461-201ENST00000516451 104 ntBASIC-1.77□□□□□ -2.69
CHMP4AQ9BY43 RNU6-158P-201ENST00000517104 100 ntBASIC-1.77□□□□□ -2.69
CHMP4AQ9BY43 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1.78□□□□□ -2.69
CHMP4AQ9BY43 RNU6-1154P-201ENST00000391001 104 ntBASIC-1.78□□□□□ -2.69
CHMP4AQ9BY43 Y_RNA.709-201ENST00000516952 92 ntBASIC-1.78□□□□□ -2.69
CHMP4AQ9BY43 Y_RNA.264-201ENST00000364665 102 ntBASIC-1.79□□□□□ -2.7
CHMP4AQ9BY43 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.79□□□□□ -2.7
CHMP4AQ9BY43 MIR4668-201ENST00000582284 70 ntBASIC-1.79□□□□□ -2.7
CHMP4AQ9BY43 MIR450A1-201ENST00000362262 91 ntBASIC-1.8□□□□□ -2.7
CHMP4AQ9BY43 RNU6-633P-201ENST00000362612 103 ntBASIC-1.81□□□□□ -2.7
CHMP4AQ9BY43 MIR4723-201ENST00000585070 81 ntBASIC-1.81□□□□□ -2.7
CHMP4AQ9BY43 AL021921.1-201ENST00000442774 93 ntBASIC-1.82□□□□□ -2.7
CHMP4AQ9BY43 RNU6-313P-201ENST00000516317 112 ntBASIC-1.82□□□□□ -2.7
CHMP4AQ9BY43 MIR4306-201ENST00000583390 91 ntBASIC-1.82□□□□□ -2.7
CHMP4AQ9BY43 U4.2-201ENST00000618561 85 ntBASIC-1.83□□□□□ -2.7
CHMP4AQ9BY43 AC093729.1-201ENST00000513074 128 ntBASIC-1.85□□□□□ -2.71
CHMP4AQ9BY43 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.86□□□□□ -2.71
CHMP4AQ9BY43 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.86□□□□□ -2.71
CHMP4AQ9BY43 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.86□□□□□ -2.71
CHMP4AQ9BY43 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.86□□□□□ -2.71
CHMP4AQ9BY43 SNORA26.4-201ENST00000391188 123 ntBASIC-1.87□□□□□ -2.71
CHMP4AQ9BY43 RNU6-479P-201ENST00000516348 105 ntBASIC-1.87□□□□□ -2.71
CHMP4AQ9BY43 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.88□□□□□ -2.71
CHMP4AQ9BY43 SNORD116-22-201ENST00000384430 92 ntBASIC-1.88□□□□□ -2.71
CHMP4AQ9BY43 RNU6-656P-201ENST00000516785 107 ntBASIC-1.88□□□□□ -2.71
CHMP4AQ9BY43 MIR548C-201ENST00000384815 97 ntBASIC-1.89□□□□□ -2.71
CHMP4AQ9BY43 MIR29B1-201ENST00000385015 81 ntBASIC-1.89□□□□□ -2.71
CHMP4AQ9BY43 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.89□□□□□ -2.71
CHMP4AQ9BY43 SNORA40.13-201ENST00000516379 120 ntBASIC-1.89□□□□□ -2.71
CHMP4AQ9BY43 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.89□□□□□ -2.71
CHMP4AQ9BY43 SNORD115-33-201ENST00000363723 82 ntBASIC-1.9□□□□□ -2.71
CHMP4AQ9BY43 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.9□□□□□ -2.71
CHMP4AQ9BY43 SNORD63.1-201ENST00000516178 80 ntBASIC-1.9□□□□□ -2.71
CHMP4AQ9BY43 AC132825.6-201ENST00000638861 357 ntBASIC-1.9□□□□□ -2.71
CHMP4AQ9BY43 MALAT1.1-201ENST00000618249 95 ntBASIC-1.91□□□□□ -2.72
CHMP4AQ9BY43 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.91□□□□□ -2.72
CHMP4AQ9BY43 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.92□□□□□ -2.72
CHMP4AQ9BY43 AP001318.4-201ENST00000616637 121 ntBASIC-1.92□□□□□ -2.72
CHMP4AQ9BY43 MIR365A-201ENST00000362260 87 ntBASIC-1.93□□□□□ -2.72
CHMP4AQ9BY43 RNU6-624P-201ENST00000363411 107 ntBASIC-1.93□□□□□ -2.72
CHMP4AQ9BY43 MIR1285-2-201ENST00000408311 88 ntBASIC-1.93□□□□□ -2.72
CHMP4AQ9BY43 RNU6-645P-201ENST00000364649 106 ntBASIC-1.94□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 251.7 ms