Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SNORA32.3-201ENST00000384772 121 ntBASIC-0.66□□□□□ -2.52
CCDC3Q9BQI4 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.66□□□□□ -2.52
CCDC3Q9BQI4 U6.96-201ENST00000636425 70 ntBASIC-0.66□□□□□ -2.52
CCDC3Q9BQI4 RNU6-905P-201ENST00000384434 107 ntBASIC-0.67□□□□□ -2.52
CCDC3Q9BQI4 RNU6-557P-201ENST00000516842 110 ntBASIC-0.67□□□□□ -2.52
CCDC3Q9BQI4 MIR8068-201ENST00000618032 68 ntBASIC-0.67□□□□□ -2.52
CCDC3Q9BQI4 snoR1.1-201ENST00000628177 80 ntBASIC-0.67□□□□□ -2.52
CCDC3Q9BQI4 SNORA63.4-201ENST00000362763 126 ntBASIC-0.68□□□□□ -2.52
CCDC3Q9BQI4 AC140658.3-201ENST00000567603 271 ntBASIC-0.68□□□□□ -2.52
CCDC3Q9BQI4 MIR6854-201ENST00000614935 69 ntBASIC-0.68□□□□□ -2.52
CCDC3Q9BQI4 U2.22-201ENST00000636441 106 ntBASIC-0.68□□□□□ -2.52
CCDC3Q9BQI4 SNORA62.4-201ENST00000365504 151 ntBASIC-0.69□□□□□ -2.52
CCDC3Q9BQI4 MIR518B-201ENST00000385127 83 ntBASIC-0.69□□□□□ -2.52
CCDC3Q9BQI4 AC021146.6-201ENST00000514659 117 ntBASIC-0.69□□□□□ -2.52
CCDC3Q9BQI4 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.69□□□□□ -2.52
CCDC3Q9BQI4 MIR6739-201ENST00000622461 75 ntBASIC-0.69□□□□□ -2.52
CCDC3Q9BQI4 RNU6-675P-201ENST00000384236 104 ntBASIC-0.7□□□□□ -2.52
CCDC3Q9BQI4 MIR521-2-201ENST00000384818 87 ntBASIC-0.7□□□□□ -2.52
CCDC3Q9BQI4 MIR203A-201ENST00000384836 110 ntBASIC-0.7□□□□□ -2.52
CCDC3Q9BQI4 SNORD75.1-201ENST00000408373 60 ntBASIC-0.7□□□□□ -2.52
CCDC3Q9BQI4 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.7□□□□□ -2.52
CCDC3Q9BQI4 RNA5SP470-201ENST00000516463 106 ntBASIC-0.7□□□□□ -2.52
CCDC3Q9BQI4 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.71□□□□□ -2.52
CCDC3Q9BQI4 MIR488-201ENST00000365739 83 ntBASIC-0.71□□□□□ -2.52
CCDC3Q9BQI4 RNA5SP147-201ENST00000516493 109 ntBASIC-0.71□□□□□ -2.52
CCDC3Q9BQI4 RNU6-402P-201ENST00000410678 103 ntBASIC-0.72□□□□□ -2.52
CCDC3Q9BQI4 AC090617.8-201ENST00000623339 167 ntBASIC-0.72□□□□□ -2.52
CCDC3Q9BQI4 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.73□□□□□ -2.53
CCDC3Q9BQI4 RNU6-44P-201ENST00000384045 107 ntBASIC-0.73□□□□□ -2.53
CCDC3Q9BQI4 RNU6-721P-201ENST00000410155 105 ntBASIC-0.73□□□□□ -2.53
CCDC3Q9BQI4 SNORD22.1-201ENST00000516331 125 ntBASIC-0.73□□□□□ -2.53
CCDC3Q9BQI4 MIR3179-1-201ENST00000578940 84 ntBASIC-0.73□□□□□ -2.53
CCDC3Q9BQI4 MIR3179-2-201ENST00000579107 84 ntBASIC-0.73□□□□□ -2.53
CCDC3Q9BQI4 MIR3179-3-201ENST00000579566 84 ntBASIC-0.73□□□□□ -2.53
CCDC3Q9BQI4 MIR3179-4-201ENST00000617599 84 ntBASIC-0.73□□□□□ -2.53
CCDC3Q9BQI4 MIR548BB-201ENST00000626714 66 ntBASIC-0.74□□□□□ -2.53
CCDC3Q9BQI4 SNORA33.1-201ENST00000364957 130 ntBASIC-0.75□□□□□ -2.53
CCDC3Q9BQI4 RNU6-844P-201ENST00000517175 102 ntBASIC-0.75□□□□□ -2.53
CCDC3Q9BQI4 MIR548AX-201ENST00000580117 73 ntBASIC-0.75□□□□□ -2.53
CCDC3Q9BQI4 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.76□□□□□ -2.53
CCDC3Q9BQI4 RNU6-168P-201ENST00000516189 101 ntBASIC-0.76□□□□□ -2.53
CCDC3Q9BQI4 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.77□□□□□ -2.53
CCDC3Q9BQI4 RNU6-267P-201ENST00000516714 103 ntBASIC-0.77□□□□□ -2.53
CCDC3Q9BQI4 CYP3A54P-201ENST00000566950 75 ntBASIC-0.77□□□□□ -2.53
CCDC3Q9BQI4 AL627230.5-201ENST00000619807 58 ntBASIC-0.77□□□□□ -2.53
CCDC3Q9BQI4 RNU6-686P-201ENST00000364839 107 ntBASIC-0.78□□□□□ -2.53
CCDC3Q9BQI4 MT-TQ-201ENST00000387372 72 ntBASIC-0.78□□□□□ -2.53
CCDC3Q9BQI4 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.78□□□□□ -2.53
CCDC3Q9BQI4 AP000533.3-201ENST00000447704 118 ntBASIC-0.78□□□□□ -2.53
CCDC3Q9BQI4 RNU6-881P-201ENST00000516813 102 ntBASIC-0.78□□□□□ -2.53
CCDC3Q9BQI4 RNU6-303P-201ENST00000517091 106 ntBASIC-0.78□□□□□ -2.53
CCDC3Q9BQI4 MIR517B-201ENST00000385102 67 ntBASIC-0.79□□□□□ -2.54
CCDC3Q9BQI4 AC022137.1-201ENST00000483735 151 ntBASIC-0.79□□□□□ -2.54
CCDC3Q9BQI4 AL353803.5-201ENST00000599815 141 ntBASIC-0.79□□□□□ -2.54
CCDC3Q9BQI4 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.8□□□□□ -2.54
CCDC3Q9BQI4 RNU4-63P-201ENST00000411313 118 ntBASIC-0.8□□□□□ -2.54
CCDC3Q9BQI4 MIR3681-201ENST00000580089 72 ntBASIC-0.8□□□□□ -2.54
CCDC3Q9BQI4 RNY1P7-201ENST00000384743 110 ntBASIC-0.81□□□□□ -2.54
CCDC3Q9BQI4 MIR124-2-201ENST00000385081 109 ntBASIC-0.81□□□□□ -2.54
CCDC3Q9BQI4 RNU6-129P-201ENST00000391022 107 ntBASIC-0.81□□□□□ -2.54
CCDC3Q9BQI4 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.81□□□□□ -2.54
CCDC3Q9BQI4 MIR1255B2-201ENST00000408618 67 ntBASIC-0.81□□□□□ -2.54
CCDC3Q9BQI4 AC074348.1-201ENST00000426503 132 ntBASIC-0.81□□□□□ -2.54
CCDC3Q9BQI4 RNU7-154P-201ENST00000516194 62 ntBASIC-0.81□□□□□ -2.54
CCDC3Q9BQI4 AC006160.2-201ENST00000637708 154 ntBASIC-0.81□□□□□ -2.54
CCDC3Q9BQI4 MIR409-201ENST00000362237 79 ntBASIC-0.82□□□□□ -2.54
CCDC3Q9BQI4 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.82□□□□□ -2.54
CCDC3Q9BQI4 RNA5SP89-201ENST00000410300 108 ntBASIC-0.82□□□□□ -2.54
CCDC3Q9BQI4 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.82□□□□□ -2.54
CCDC3Q9BQI4 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.83□□□□□ -2.54
CCDC3Q9BQI4 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.83□□□□□ -2.54
CCDC3Q9BQI4 SNORD18.2-201ENST00000459604 70 ntBASIC-0.83□□□□□ -2.54
CCDC3Q9BQI4 RNU6-153P-201ENST00000364422 104 ntBASIC-0.84□□□□□ -2.54
CCDC3Q9BQI4 RNA5SP67-201ENST00000516422 131 ntBASIC-0.84□□□□□ -2.54
CCDC3Q9BQI4 MIR4464-201ENST00000580818 92 ntBASIC-0.84□□□□□ -2.54
CCDC3Q9BQI4 MIR1297-201ENST00000637311 77 ntBASIC-0.84□□□□□ -2.54
CCDC3Q9BQI4 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.85□□□□□ -2.55
CCDC3Q9BQI4 Y_RNA.694-201ENST00000516677 117 ntBASIC-0.85□□□□□ -2.55
CCDC3Q9BQI4 MIR3675-201ENST00000583661 73 ntBASIC-0.85□□□□□ -2.55
CCDC3Q9BQI4 SNORD114-25-201ENST00000363742 72 ntBASIC-0.86□□□□□ -2.55
CCDC3Q9BQI4 RNU6-478P-201ENST00000363904 110 ntBASIC-0.86□□□□□ -2.55
CCDC3Q9BQI4 AL021921.1-201ENST00000442774 93 ntBASIC-0.86□□□□□ -2.55
CCDC3Q9BQI4 RNU6-656P-201ENST00000516785 107 ntBASIC-0.86□□□□□ -2.55
CCDC3Q9BQI4 AL445584.3-201ENST00000617173 78 ntBASIC-0.86□□□□□ -2.55
CCDC3Q9BQI4 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.87□□□□□ -2.55
CCDC3Q9BQI4 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.87□□□□□ -2.55
CCDC3Q9BQI4 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.87□□□□□ -2.55
CCDC3Q9BQI4 RNU6-380P-201ENST00000410207 107 ntBASIC-0.87□□□□□ -2.55
CCDC3Q9BQI4 MIR6888-201ENST00000621977 67 ntBASIC-0.87□□□□□ -2.55
CCDC3Q9BQI4 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.88□□□□□ -2.55
CCDC3Q9BQI4 RNU6-315P-201ENST00000362666 107 ntBASIC-0.89□□□□□ -2.55
CCDC3Q9BQI4 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.89□□□□□ -2.55
CCDC3Q9BQI4 RNU6-49P-201ENST00000384256 107 ntBASIC-0.89□□□□□ -2.55
CCDC3Q9BQI4 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.89□□□□□ -2.55
CCDC3Q9BQI4 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.89□□□□□ -2.55
CCDC3Q9BQI4 IGLL4P-201ENST00000614590 133 ntBASIC-0.89□□□□□ -2.55
CCDC3Q9BQI4 RNA5SP331-201ENST00000364986 107 ntBASIC-0.9□□□□□ -2.55
CCDC3Q9BQI4 MIR519A2-201ENST00000384990 87 ntBASIC-0.9□□□□□ -2.55
CCDC3Q9BQI4 RNU6-807P-201ENST00000516805 107 ntBASIC-0.9□□□□□ -2.55
CCDC3Q9BQI4 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.9□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 284.3 ms